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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0286900 |
| Transcript ID | LotjaGi6g1v0286900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rho GDP-dissociation inhibitor 1; TAIR: AT3G07880.1 Immunoglobulin E-set superfamily protein; Swiss-Prot: sp|Q9SFC6|GDIR_ARATH Rho GDP-dissociation inhibitor 1; TrEMBL-Plants: tr|A0A1J7H6P8|A0A1J7H6P8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0286900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60436135..60438499) extracted from Lotus japonicus Gifu genome v1.2.
CTTCACATTCACAAAGCGACCATCATCATGGGTTTTGATGACAATGTCAAGAACGCAGACGACAATGCCGCCTCTCGTCT CCCGGAACCAACGCTGCTGCACCACGCCGGAAAATCTGCCACCGATGATGAGAGCGGTGATGAAGAAGGCCGCACCACGC TTAGCAGATACAGAAGCGAAAGCTCCATCGCTGCCACCGAGGATGATGACGATGATGAAGACAGGAAAATTGAATTGGGT CCTCAGTGCACCTTGAAGGAGCAACTTGAAAAGGACAAGGTTGGTTTCGCTTTCGCTTCAGAGGAAGAATCTTTGCTTTT TTTCCTAATTCAACCATTTTCTTGTTTACCAGGATGATGAGAGCTTGAGGAGGTGGAAGGAGCAGCTTCTTGGAAGTGTT GATATAAATGCTGTTGGAGGTAATTTTCATTTGGTTTCAATTTCTTTTTCTTCATGTGAATCTTTTGTTACATTTCTGGC TCCATTATCAGATTCAGCTCAATTTGTACAGTGAAATCTTCAAAGATTTTAATCATAGTATATACAACATTATCTGAAAC AGAACAAATATAATTTTTGTCCTATTAGTCATGGATTTTACTATGAAATCAAGGAATATTTCATCATCTTTTGTTTTAGG CCTCAATATGTCATTTCAATTGATATCATGGATATTTCAATTTCATTATTATTATTATCTGGTGGTTGCAAATGTGTCCA TACCCTAGTATTGCTGCTTTTTTCTTTTAATTATTTGCTGTTGTGTTGGTTTATGCAAGTAAACATGATTTCATTTTGTG AATTTTATTGTTCCCTATGTTGTAACTTGCAGTTGAATCAGTCAATGGTTCAATTTTCCTTGTCTTGAACTTGCCCTGAT GAAAATCCTTTGGCTTTGGAACTTCTTATCAGACCTTTTTCTAACTTTTCAAATGTGTTGTGGATAATTTAGAAACTCTG GAGCCAGATGTGAAGATCCTTAGCCTTGCAATCAAGTCTGCTGATAGAGCTGATATTGTTCTTCCAATACCAGAGGGAGG AAATCCCAAGGGTTTGTGGTTTACTTTGAAAGAAGGTAGCCGTTACAGCTTGATGTTCACTTTCCAAGTTAATCATAACA TTGTTTCTGGTCTCAAATACACCAACACTGTGTGGAAAACTGGTATTAAAGGTAAAGTTCTCACTTAATCTCCCTCCCAA TCAAATTTGTGAAATTACAGATAATTTGTTTGTAAACTTGACTCATTGTTGATCTTTGTTACAGTTGACAGCAGTAAGGA AATGATTGGAACATTCAGCCCCCAAAATGAGCCTTACACACATGAGATGCCTGAAGAGACAACACCATCTGGGATATTTG CTAGAGGGGCATATTCAGCTAGAAGTAAGGTAATTTTCACATGCGATGCGCTTACTTAACGCTAAAGAAGAGTAGTTACT CACTGCAATGCAGCATACTGTTTGAAATTTAGTCTTTGGACAAATGGATAAAATTGGTAGCTTCTGTGCATTTACGATCC CCATGCATTTCATGAGATATTATTTGAAAAACAATGTAAATTGTGGGGACCTATGCCTGCCTGGCGCCTGCAATGATCTG CTACTTTCATGATATTCACCAGAAAACAGCTACTTGCTTAGTACAGATTGATAAACAGAGTTAATCCTAAATCGTAATCT CGACTTTTATCGAACCTCTCTAGCTGATTTACCTTCATTTGAGATTGTGACCGTTCATTAGATTCTTTGTCCTCATTTGG TGTCTAATTTCTTCTTTCACCATTAAAATTGTGTCATATAAGCATGAATATGACAGCAATAACCTTAGATTGGTGGTTTT TAAATGTCATGTCATATTTTAATTTGGTGGAACAGAGGAGGAGACCCCAAATGGGGATAGATGATTACACTAGCCCGCTA GAGAGGGTTTGGGTTCGACACTGATATGTTTCCATATTAGTAATTTGAGGACATGTTTTGAAAATCAAGTGAAGCTGAAT TTATGCCTGGTTTGCATCTATCAGACCATCAATAAATGTTCTAATAAATTTGGCACCAGACTTCATGTGCACCCTTTCAA GTTTCAACCACTTTTTCAAAATTTCTGAGTCACTTTTCTGGTAGAAGTCTTTAATTCTAATGGAACTTCTGTCGTGATGG AGTCTTTAAATATGATTACTTAACTAATAGTGGCAATAATACACTCTTTAATATGCTCTTAGATTGCTTTGCTAGCATTT TTGTTGTTGAATGTGAACTGTTTGACTTCCTATTTTGTTTCTCCTTTTTTCAGTTTGTTGATGATGACAACAAGTGCTAC TTGGAGATCAACTACACTTTTGATATCAGAAAGGATTGGCAGTAG
CDS sequence (LotjaGi6g1v0286900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTTGATGACAATGTCAAGAACGCAGACGACAATGCCGCCTCTCGTCTCCCGGAACCAACGCTGCTGCACCACGC CGGAAAATCTGCCACCGATGATGAGAGCGGTGATGAAGAAGGCCGCACCACGCTTAGCAGATACAGAAGCGAAAGCTCCA TCGCTGCCACCGAGGATGATGACGATGATGAAGACAGGAAAATTGAATTGGGTCCTCAGTGCACCTTGAAGGAGCAACTT GAAAAGGACAAGGATGATGAGAGCTTGAGGAGGTGGAAGGAGCAGCTTCTTGGAAGTGTTGATATAAATGCTGTTGGAGA AACTCTGGAGCCAGATGTGAAGATCCTTAGCCTTGCAATCAAGTCTGCTGATAGAGCTGATATTGTTCTTCCAATACCAG AGGGAGGAAATCCCAAGGGTTTGTGGTTTACTTTGAAAGAAGGTAGCCGTTACAGCTTGATGTTCACTTTCCAAGTTAAT CATAACATTGTTTCTGGTCTCAAATACACCAACACTGTGTGGAAAACTGGTATTAAAGTTGACAGCAGTAAGGAAATGAT TGGAACATTCAGCCCCCAAAATGAGCCTTACACACATGAGATGCCTGAAGAGACAACACCATCTGGGATATTTGCTAGAG GGGCATATTCAGCTAGAAGTAAGTTTGTTGATGATGACAACAAGTGCTACTTGGAGATCAACTACACTTTTGATATCAGA AAGGATTGGCAGTAG
Protein sequence (LotjaGi6g1v0286900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFDDNVKNADDNAASRLPEPTLLHHAGKSATDDESGDEEGRTTLSRYRSESSIAATEDDDDDEDRKIELGPQCTLKEQL EKDKDDESLRRWKEQLLGSVDINAVGETLEPDVKILSLAIKSADRADIVLPIPEGGNPKGLWFTLKEGSRYSLMFTFQVN HNIVSGLKYTNTVWKTGIKVDSSKEMIGTFSPQNEPYTHEMPEETTPSGIFARGAYSARSKFVDDDNKCYLEINYTFDIR KDWQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 69 | 69 | - | – | |
| PANTHER | 26 | 244 | 219 | 1.2E-123 | – | |
| PANTHER | 26 | 244 | 219 | 1.2E-123 | ||
| MobiDBLite | 27 | 46 | 20 | - | – | |
| Gene3D | 47 | 244 | 198 | 1.8E-67 | ||
| SUPERFAMILY | 55 | 244 | 190 | 1.12E-68 | ||
| Pfam | 56 | 242 | 187 | 3.5E-83 | ||
| PRINTS | 163 | 179 | 17 | 1.6E-6 | ||
| PRINTS | 180 | 195 | 16 | 1.6E-6 | ||
| PRINTS | 222 | 239 | 18 | 1.6E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Rho GDP-dissociation inhibitor activity | Prevents the dissociation of GDP from the small GTPase Rho, thereby preventing GTP from binding. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
Expression pattern of LotjaGi6g1v0286900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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