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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0287600 |
| Transcript ID | LotjaGi6g1v0287600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF506 family protein; TAIR: AT1G62420.1 DUF506 family protein (DUF506); Swiss-Prot: sp|Q28E61|NSUN2_XENTR tRNA (cytosine(34)-C(5))-methyltransferase; TrEMBL-Plants: tr|A2Q1J3|A2Q1J3_MEDTR DUF506 family protein; Found in the gene: LotjaGi6g1v0287600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60493006..60500627) extracted from Lotus japonicus Gifu genome v1.2.
AAGTGATTAAAATTAGTTCTTTGAGCCTTTGAGGTTGAGAATTTGATCTTCAAGAGACGCACTATTGGGGAGGCTTCAGG TCATCCTTAGATTAGAGAAAAAAATTCATATTGGTCATCCTGACCGACTAACACGACATTCACTTTAATGTCAGCAACCC ACCGGCGGCGAAGAGGACCACCGGAGATCTGGTTCAGGGTGTCTGTTCCGAAGATAGGAAGCCGAATCCACGCGGAGGCG CCGTTTTGGGTGCAGATATTGTTGTTGTCGTTCATTCAGCGGCCATCGACCACTTCCCAATTTGCAACCCCACCGAGCTC TTCTCCACGTTGGCACCCATGGATGAGGAGTATAAGATAAGATCCATGTAGATAGCATCTAGGTCGATGCAACCCCTATG TAAGCACACATCATTTTTCATGCAAAAGTTATCTGCTTCCAACACCCCTTTTCTCTATCAGTTTTATCTTTATGGGTTTC CTTAAAAATCATTTTTTGATTTATAATGTTGGGTTTTTCTTTTTTTGATAAGCGGAGGTTTCATGGGTTGATTTGAACTC CAAGAATCATTACTTTGTCCACTGCCGATGCAAAATTTGATGGGATGATTGTAGAGTATCCATTAATGGTTTTGATTATG GAGTTTGAATTCAGAGCCCGAGTAGTGTGCGAGAGCATGTGATGAAGTTTTATAATTAACATTTAGGGTTTGAGTCAAAT TGAACAGGATGGATCTGGTGGCCAGAGGTAGTGGTGGCTGGAGGCGGAGCTGGTGGTTGGAGGTAGGCGTTTTACTGGCC AATGGATCTAAGAAGGTTGGGGGAGAAAGACAATAAAGGGCTTTACTGTAAAAGACATATTAAAATTATAACAAATTATA AACATAAAATTACAAGTTTAACATAATATTCTATTTCTGTGGTTGTGAGGCTCTCTTGCACCGGTGCATGACCCAGTATG TATTGCACCTTATACTCCACCACAAGTCTACAAGATATCACTTACACATCTAGGATAAGTTTTTCTAAAGGGAATAATCT CATTCATTATGTATATAAGAAGCTAATTGCAATAAATGCCAATATTGGTAATTACCAAAACAGGTAACATCCCTTATTTA GAATGTGAGATTTTTGTTTGTAGAGAGAAAAGGCCAACAAATTTAGGCCCTTGAGAAAACCTGACGTAAGATTCAATGAA TGTAGACATTTAGTTGATTCATTGCACCTGGTCTCATCCAGACACAATACAGATAACTCTCAAGTGAAGAACTCACTACA GTTTTACTGACACAACAAACCCAGCTCCTGAACTCCACATCGCATTATGTTGGACTGAAGAATTTTCCTTTTCGATTTAA TTATAATAGTAGAAAATAGTATTATTTAGGTACACAACAAAATGTAGTTTTCAAAGCAAATAATTTACGTTGCTGAAAGG AAGGATTATGGCCCACACTCTTCACCTGTGGAATGATTATGGCCCAACACTTAAACAAGACCGTTGTTTGGAACCAGTGA GGAGGCACTTCCTATTTTATTTGAAAGAAATCTCTCCATTCATTTTCCTGTTTTGTTTATATTTTTACAAATTCACAATG TAATTTAACCTCCATTATAGACTTATAAAATCTGGTTCACAAACTTACATTCACAAGAATGTCATGTGTATATTAGATGC CCCCGTATACGAGTGCATTATTGGTGGAAAAAATTTCAATGCTTTCAATAATGAGATTGGTAACTCTGCTTGTGCTAATC CCAAAGGTTAAAAAATCTGTTTGTGCGAACCAATTTAGGCCGATTAGCCTCTGCAATGTTATTTTCAAATTAATTACCAA AACGATTGCTAATCGGTTGAAACTAATTTTGAATGATTTGATTTGCGAAGCTCAAAGTGCTTTTGTTCCTGGGAGACTAA TAACAGATAATGCGTTACTTGCTTTTGAATGCTTCCACTACATGAAGAAGCGTATCACAGGAAGGAATGGAATGATGGCT CTAAAGCTAGACATGTCCAAAGCCTATGATCGTGTGGAGTGGCCCTTTTTAAGAGGTATTCTAACCCATATGGGGTTTCC TTTAAATTGGGTTGAGCTTATCATGTCGTGTGTTAACACAGTGAGTTTTTCTCTTATGGTTAATGGTAACCCACAACCGT TTTTCGCACCTCATCGAGGTTTGCGACAAGGAGACCCTCTCTCTCCTTACTTATTTATTTTATGTGGTGAAGCTTTCTCA GCTTTGATTCAGCGTGCTATCTCAGTTTCTGCTTTACATGGTATTAAGATTGCAAGATCTGCTCCTGTTATCTCACACCT TTTGTTTGCAGATGATAGTGTTCTTTTTTCCCGGGCTTCGATTCAGGAAGCAGAATGTATCAAAACCATTCTTGCAACCT ATGAACGAGCTTCTGGGCAGGTGATTAATTTGGACAAGTCCATGCTTTCAGTTAGCCGAAATGTGCCAGATAACCGTTAT TATGAGCTACAACAGCTTTTGGGTGTAAAGGCAGTAGAAAGTTATGATAAGTACTTGGGGCTACCAACTATCATTGGTAA GTCTAAAAACCAAATTTTCCAATTTGTGAAAGAACGAGTGTGGAAGAAACTTAAGGGGTGGAAGGAGCGCACCTTGTCCA GAGCGGGTCGTGAAGTGCTAGTTAAAGCTGTGGCTCAAGCAATCCCATCATATGTAATGTCTTGCTTTGTCTTACCATAT GGCCTTTGTCATGAGATTGAAGGTATGATTTCTCGCTTTTATTGGGGTGGTGATGTAACCCGTCGGGGTATGCATTGGAT TAATTGGAAAACTCTTTGCCGGCCCAAAGATAATGGGGGTCTCGGATTTAGAAATTTTAAATCTTTTAATTTGGCCCTAG TGGCAAAGAATTGGTGGAGGATACAAAACTATCCGAATTCTCTCCTTGGTAGAGTTTTTAAGGCTTTATATTTTCCAGCA GGTAGCATGAATGGAGCCAAGAAAGGTTACCGTCCGAGTTATGCGTGGACTAGTATTCTAAAAACATCGGAGTTGGCTAT GAAAGGAAGCATGTGGCGTATTGGTAATGGATTGAATGTTCGTATTTGGGATGACAATTGGCTCCCGCATGGCCCTCCAA TTAATTGCAGGCAAGATGTGGTGGAGGAACTTAGTTTGAAATTTGTAGCTGATCTTATCCAGCCAGGTGGTGGCTCTTGG AATAAGGAATTGGTGGAATGGACTTTCTGTCCAAATACTGCATTGCGGATCTTGGCTGTCCCCTTATCGGTGCATGCAAC GGAAGATTTACTTTTTTGGGGTGGAACTCCAGATGGGTGCTATACAGTGAGCTCTGGCTATGCTTTTTTACAAAACGTAG CTAGCCAAGCTTCTCCTTCATCATCCACCTCGGCTGAACCTGGTTTTGATGCGACTCTCTGGCGGAAGTTCTGGAAAGCT CCATCCCTTCCTCGGGTTAAGGAGGTGGCATGGCGTGTGTGTGTTGGAGCGGTGCCCACTAGGCTTTGTTTGCATCGTAG AGGAATGGACGTGGATCCGAGTTGCCCGGTGTGTGGCCATGAGGAGGAGAGCATTGATCATCTTTTTATCCATTGTCCTG TTGCGCGAGGTTGCTGGTTTGTGAGCCTGGGTGTGCGCACAGATGCTCGTACATCGACCTTCATGGACTTCATGGCTGCG GTGCTGCGTGACAAGGATGGCTGGTGCATTGCAGAAGTTCAGCGCATGATCTATTGCTTGTGGGAGGGTCGGAACAAGGT TCTTTTCGAGCTCCGTGAACCTGGTTGTCCTACGGTGCTGTCTCGTTTTGCAGCGATGAAGTCCCCTTCACAGCTAGCGA CGCATGGGAGTCAGAGGGAGCGGTCGGTGGTGGCAAAATGGTTGAGACCAGCAGCTGGGATGATTAAAATTAATGTGGAT GCCTCCCTTGGTGGTGATTTTCTTGCTGGTTTCGGTATGGTGGCTAGGGACGAGGATGGCGAGATCTTGGCGGCGGCTTC ACACTACCCGACGGCTGCTACTTCAGCCACGATGGCAGAGGCGTTTTGTCTCCGTTGGGCCATGGAGCTTTCTTCTCAGT TAGGATTCAGGGGGGTGCAGTTTGAGACTGATTGTCTTCAGCTTTTCCATGCTTGGAAGAAGGGTGTTGGTCATTCTCCT TTATTTTCTTTGCTTCAGGATTGTAAGGCTTTTGTTCGTTTGTTTGATTGTGTTGAGTTTACTTTTACTCGTAGACAGGG CAATACTTGTGCTGATTTTATGGCTCGGAACGCCTCTACCCTTTCAAATACTGTTTGGGTGGAGGAGGGTCCCCCGGGTT TATGTAACCTTTTACAGGCGGATCTTTTGGCTTCTATGCCGGTTATGATTTAATATATGTTATGCCACGTTCAAAAAAAA TAATGAGATTGGTAAAGAATGTCACTAAGATAAATTTGCATGAACAACTCTAACTACACGCAATGCAATGTGCACCTTAT TTTTGAACGTTTAGTAATTTCATTAAACTGCCAAAGGCAAAACATCATTACAATATTGTCCAACTAATTAATTAACCTTT GATTATTAAAAAAGTTATCAGTTTCAAAAAAACAAAGATGATTAAAAAAGCTATGGAACCATTCAAAAAATATAGAGTAA CTATACATATATTCCATAAGGATTATTAGAATTATGGAGACCTAACTTAACCCAAAAGCTAGCTCAATATATAGTTGATG ATCTACCCCTTATAAACACTTGTTTGGTCAATGGTCATATCTCTAGTCAATGTGAGATTTCTAACAAATGTTGTCCACTA ACTGAGATTTTACATAGGGAATTAGAACCGTCGACCCATGAGGATGTGAGAGCTGAACCCGGAACTTGTAGCCAGTTGTG CTAACCCAAGTTAATCTCCTTAGCATGCCACGACACACAGTTTGGTAGTTTGAAGGTATTTTCTTTCTGTTCTATCATCT TTCCAAAAAAATCACTATTTTGTGATTTCATGAATAAATCAAAATAATAAAATAGAAAAAAATAAATGGTAATGTAAAAA TGATTTACACATTCATTCAACTAGAGTGATCAATTTACCATGTTATAATTAAATTTGAATTTAAAATTAAAAATATGCTG AGATGCAGTGTAAAATTTTGATAAATTAAATCCATAAAAAAATACTCATACCAGTATATTGATGAAAACTAACTTTCAAA AAAAATATATATTGATGAAAACTAACTTTAGAATGAGTAACTTATTTAGAAAAATGGTAAATATCAATAATTATACCGAA TATGGCAAAGCTATTTTTAGAAAATGACAAGAATTTCGTGTCATATTGATAAAAAAGGATAAATTATTTTTCATTATGCA TAAATTATTGAAATATTTTAACAGCCATTTTGGTGAGTTTGTACTTTCTTGGAGATTAATTATTTCAGTGCTCTTTCAAA AAAAAAACATTATTTCAGTGCGTCTTGTGGCAGTTTCGATTCTGGCGTCACTATGTGTTAAGTTTTCTCATAAATGAGCT ACAAGTGACCAAGATTATAAAAATGGAGTTAAGATAAAAAGCACTGCAAAAAAAGGCAGAAGGAAACCAATGTAATTTTA CTCTTTCCGTGATGAAAATGATGTAAGTTATTGAAGTCAGTAATAAGTAATGTCTCCATTAATCAATAAACTGTTACTTC CTTCCTCCAAATTAAATCATTCGAACTTGAAACGTAGAGTTAACATGGACGCTTTTTGAGGCCATGTTCATAAAAATGAA CCTAATATTCGGTCCACATTCATAGTGCAATTTGGAACTATAAAGTATAACCCCAGCCCACCATGTCAATCGTGCCAAGT ACATTCAACAATTATGTATAAATATGACGCCATTTCCATCTTCTCTCATCATCATCCTTACTCCATCTTCCTCTCATTCT CTTAACACCATATCAACATTATTTCAACAACATACTCATTTTATTCATATTCTAAGTGTATATATACATACACATTGTAA TTTGTGATTACTAGTTTAACTGTTTAAGGCACAAGAGAGGAAGGGGTATTACTAGCTTTTGAAAATGGCAAGGATTCCGG TGAGGTTTCAGAGGATGGCTGCGGCGTTTGAAGCTGATGTGGCGCGTGTGCGCCCCTGCGGTGAGAGCAGCGGGAGCGAG CACTCCCCGCCGGAGAGTGTAACTGATTTGTCTGATCTTGTGAATTCCTTCATGGAGAAGAATGAGAGATCGGCTGCTGC AGGAGAAGGTGGTGAAGAGGAATTGGTTGATGTCCGTCGTGAGGAAGATAATGAGAAGGGTGCATGTGATGAAGAAGAGG TTGAGAAATTGGAGTGGTCTGAATCTGAGAAGAGGGAAATGTTGCTGGGTTTCTTTGCTGGGAATGAAGAAGGTGATGAT GATGAGGATGAAAGGGAGGCTAAAGAAACCATTAAGGGAGAAGTTGAGTTTGCATTGGGAATTGTTGGTGACAGTTCTGT TCCTGGATTCAAACGCCTTTTGATGTCAAGATTGAGGGAGAAAGGTTTTGATGCTGGTGAGTGCTACATTCCTTATAATT AATTTGATGTAGCATATGAACATTTAGCTCTTAATTCAATACACTTTACTTAGTCACATTCAAAAAAATGATTTTTGGGG GGATAAATGATTCCTAATCCAGATGTTACATTATGAATATACTGTTCTGAATCCATTGATGTTGGTGAGTTGGAAGTGTT AGTCTTATATATTGATCATTTATCCCATCAGAATATACTGTTTGACTATTATTCTATTTTAGGACTACATTATCTCTAAG ATGAACAGGGCTTTGGGACTTTGTACTGATGATATTGTGTGCTCTCTTTGAACAGGGCTTTGCAAAACAAAGTGGGAGAA AATTGGAAGATTAACAGCTGGTGATTATGAGTACATTGATGTCAATTTTTCCGGAAAACGCTACATTGTTGAAGTTTCCC TTGCTTCCGAATTCGAAATAGCTCGCGCCACACATAAGTATACTTCATTGCTAGATGTTTTCCCAGTGATATTTGTTGGT AAAGTGGAAGATCTGAAGCGGGTTGTGAGGCTGATGTGCAGTGCAATTAAGGGATCAATGAAAAAAAGTGACCTGCATTT ACCTCCATGGAGGAGAAATGCGTACATGCAAGCCAAGTGGTTTAGTTCTTACAAGAGAACATCTAATGCTGTTGCAAGCA GAAAAGCAACATCAACTGTGTCTCCTGATTCCTTATTTCCTAAGAGGTCAATTGGATTTGAAGCAAGGCCTGTCAAAGCA TATAACTGCAGAGAACATTATGTGAGCAAAACTGGGTTCAGAATTGGCCACTTGACAGCTGCTTTTAATTCTGATAGCTT TGGTATGCAATTATAGTTAGTTCTTTTTTGTATAGATGTGTCTTTTTTGGAGAGGTTGGAGTTGATAAGTGTGATAGTGC CTTAAGCACACAGGGCACAAAGTGCCTGAAAACAAATTTTGGATAAATGCATTTTCTAGGTAAATGTATCATAGGCAATT AAGGTTCATTGCTAGCAATTTTGTTTCATCTGTTTGCAGTCATTATTGTAAAAGAGCATTGTCCAGTGGAGAATTAATTT TTTGGCAAGTAATTAAGTGGAT
CDS sequence (LotjaGi6g1v0287600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGGATTCCGGTGAGGTTTCAGAGGATGGCTGCGGCGTTTGAAGCTGATGTGGCGCGTGTGCGCCCCTGCGGTGA GAGCAGCGGGAGCGAGCACTCCCCGCCGGAGAGTGTAACTGATTTGTCTGATCTTGTGAATTCCTTCATGGAGAAGAATG AGAGATCGGCTGCTGCAGGAGAAGGTGGTGAAGAGGAATTGGTTGATGTCCGTCGTGAGGAAGATAATGAGAAGGGTGCA TGTGATGAAGAAGAGGTTGAGAAATTGGAGTGGTCTGAATCTGAGAAGAGGGAAATGTTGCTGGGTTTCTTTGCTGGGAA TGAAGAAGGTGATGATGATGAGGATGAAAGGGAGGCTAAAGAAACCATTAAGGGAGAAGTTGAGTTTGCATTGGGAATTG TTGGTGACAGTTCTGTTCCTGGATTCAAACGCCTTTTGATGTCAAGATTGAGGGAGAAAGGTTTTGATGCTGGGCTTTGC AAAACAAAGTGGGAGAAAATTGGAAGATTAACAGCTGGTGATTATGAGTACATTGATGTCAATTTTTCCGGAAAACGCTA CATTGTTGAAGTTTCCCTTGCTTCCGAATTCGAAATAGCTCGCGCCACACATAAGTATACTTCATTGCTAGATGTTTTCC CAGTGATATTTGTTGGTAAAGTGGAAGATCTGAAGCGGGTTGTGAGGCTGATGTGCAGTGCAATTAAGGGATCAATGAAA AAAAGTGACCTGCATTTACCTCCATGGAGGAGAAATGCGTACATGCAAGCCAAGTGGTTTAGTTCTTACAAGAGAACATC TAATGCTGTTGCAAGCAGAAAAGCAACATCAACTGTGTCTCCTGATTCCTTATTTCCTAAGAGGTCAATTGGATTTGAAG CAAGGCCTGTCAAAGCATATAACTGCAGAGAACATTATGTGAGCAAAACTGGGTTCAGAATTGGCCACTTGACAGCTGCT TTTAATTCTGATAGCTTTGGTATGCAATTATAG
Protein sequence (LotjaGi6g1v0287600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARIPVRFQRMAAAFEADVARVRPCGESSGSEHSPPESVTDLSDLVNSFMEKNERSAAAGEGGEEELVDVRREEDNEKGA CDEEEVEKLEWSESEKREMLLGFFAGNEEGDDDEDEREAKETIKGEVEFALGIVGDSSVPGFKRLLMSRLREKGFDAGLC KTKWEKIGRLTAGDYEYIDVNFSGKRYIVEVSLASEFEIARATHKYTSLLDVFPVIFVGKVEDLKRVVRLMCSAIKGSMK KSDLHLPPWRRNAYMQAKWFSSYKRTSNAVASRKATSTVSPDSLFPKRSIGFEARPVKAYNCREHYVSKTGFRIGHLTAA FNSDSFGMQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 323 | 321 | 1.1E-109 | – | |
| PANTHER | 3 | 323 | 321 | 1.1E-109 | ||
| Pfam | 43 | 265 | 223 | 9.9E-62 | ||
| MobiDBLite | 54 | 80 | 27 | - | – | |
| MobiDBLite | 57 | 80 | 24 | - | – | |
| TIGRFAM | 144 | 267 | 124 | 2.2E-50 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0287600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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