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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0292300 |
| Transcript ID | LotjaGi6g1v0292300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY transcription factor, putative; TAIR: AT1G62300.1 WRKY family transcription factor; Swiss-Prot: sp|Q9C519|WRKY6_ARATH WRKY transcription factor 6; TrEMBL-Plants: tr|A0A0R0FZB3|A0A0R0FZB3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0292300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61043430..61046627) extracted from Lotus japonicus Gifu genome v1.2.
TTGCAGTTCCATTTGGTCCACGCTCCCTCATTCCCCCAAACTCTTTTTAAACCCCCGAAACCTCTCACCGGTGAAAGACT TCAATTCTCACCTCCTTCATCTCTCTTACCACACAACTCTCTCTCTTTCTTCTTGCACTTATCTCCTTGTTTATTTAATT TTATGGACAAAGGATGGGGTCTCACTCTTGATTCATCTTCCTCTCAATCCCTCCCTCTCTTTCCATCCAAACCTTCTGCA TCTCTCATCAACACCATGTTCCCCATTCACGGATTCCCTGTCAATCTTACCCGCAACACCAACGATGAACAACACACCGC TGATGACAGCCGGAAAGTTGTCGGCGAAGTCGATTTCTTCTCTGATAGAAACAACTCATCGCCTCCTCCTGGCTATCTCG ACCATCATCAACATGCTAAATCTAATATATCTGTTAAGAAGGAGATTCTCCCCGAAGAAAAACCTCCCAACGTTAATGTA ATTAACTTCCCTAGCCTCCTTTCAATTTCAATTATTTTTTGCACAAATTCTATAGCAATCACAATAATTATATTTACTGA TACAATTCTCTTCTTTGTTTTCTAGACTGGTTTGCAACTCCTAATTACTGGGAACACTGGGAGCGATCAATCAACTGTGG ATGATGGTGTTTCATCAGATGTTGAAGATAAGAGAGCCAAGACCACTGAGGTATGTAGTATATATGTACATATATAATTT AATTATTTCTGAAGTTTAATTGCTAGTTTGTAATAATGGGGTAAAATGGAGAATTAATAACATCCTTGTTTGATTTATTC AGCTTGCACAGTTACAATCGGAGCTTCAACGCATGAATTCAGAGAATAAGAAACTCAAAGAGATGCTCACCCATGTCAGC GGTAACTACACCGCTTTGCAGATGCATCTCACTGCATTAATGCAAAAGAACCACCGCACAGAAAATGAGGTCATTATAAA TATTTATTACTTTAATTTTCCATTGCCAATTTATTTTCTGGAAATTACTTTGATATGATTGAATTATATCTAATTTTATT GATTAATCAAATTCAGGTTGTTGAGGGAAAATCTGAGGGGAAAAACCATGTTGCTGGTGGAGGAATGGTACCGAGACAGT TCATGGACATAGTAGGACCTAGTGGTACTACAGCTGAAGTAGAAGATCAAGTATCTAATTCTTCTTCTGATGAACGGACA CGATCGGGTACACCTCATAACAATCATGTTGAAGCTGGAACAAGAGATTACGTGAGAAACAGTAATGGTAAAAATGAATT GGGCAGGGAAGAGAGCACAGATTCAGAGTCACAAGGGTGGAACGCCAACAACAAAGTTCAGAAACTGAACCCCTCTAATG CAGCTGTGGATCAGTCCACTGCTGAAGCCACCATGAGAAAAGCTCGCGTCTCAGTTCGTGCTCGATCAGAAGCTTCCATG GTTAGTACATCATCATTTAATAGATCAATTCAATCAGTAAACAGTTAATTAATTAAAGCAAGTCATTAGTACTTCTAGTA ATTAATTTCTCTAACTGAGTAATCTGATTAATTAATGCAGATCAGTGATGGATGCCAATGGCGAAAGTATGGACAAAAAA TGGCAAAAGGAAATCCATGTCCTCGAGCATATTACAGATGCACCATGGCAGTTGGTTGTCCAGTTCGCAAACAAGTGGGT TTTTCTTTCTAAATCATGCAATTAACTTAATTTGTTACTTGTAGTCATAGTAGTAATGTCCATTAAGTTAATGTTGCTAA TAATTATTGATTGTTTTGTTAATTAATAGGTTCAACGAAGTGCTGAGGACAGAACAATTTTGGTGACAACATATGAAGGC ACACACAACCATCCACTGCCACCTGCTGCGGTGGCTATGGCTTCAACCACCGCTGCTGCAGCCAGCATGTTGCTGTCTGG GTCAATGACAAGTGGAGATGGGATAATGAACCCCAATTTGCTAGCTAGAGCTATTCTTCCTTGCTCTTCTACGAGCATGG CAACACTTTCAGCTTCAGCACCATTCCCTACCGTGACACTTGACCTCACACACAACCCGAACCCTTTGCAATTCTCAAGA CCGCAACATTCTGCACCGTTCCAAATACCCCAGAATTTCATGTCCGGACCAGCCTCATTTGCACAAGCTGCACCGCTTTA TAATCAGTCCAAATTCTCAGGTCTTCAATTGTCATCCCAGCAGGAAGTGGGTTCTTCACACCAATTGGCTTCTCAACAGC CACCACAACAACAGCCTTCACTAGCTGATACTGTTAGCGCCGCCACCGCAGCCATCACCGCCGACCCCAACTTCACCGCA GTACTTGCTGCCGCCATCTCCTCCATCATCGGTGGTTCTCATGCAAACAACAATGGCAGTCACAACAATAACAACAACAA CAACAAGAGTACAATGAGCAATTTTTCAGGAAACTAGGCCTTTCTCTTTCTTTTTTGTTAATTATTATATATTACTTATT CCTTCTTTTCCTGTTTTTTGTACATGGGTAAGGCCAAGCCATAAATGTTGTTAATTTTTTAGTCCATGTCTTGGGAGGGA ATAGATATCAGAAATGCCTTCATTTTTTTCTTTATATCATTTCAATTTGAATAATGTTGTATATTAGTTTCAAAATAGTT AAATAGACAAAACAAAACAAAAATCTCTTTTATCATCTTCCTTTCTTTCATCTCTATCTTTTCTAGTCTTCGCCTCCATT TTTTTCTGACAATGTTGAAAACAACTTAAATTGTGACACTCCCAAAAGAACAAAACGAGAAGAGAGAAGAAAAAAATGGC GTGCAAATAGCTAGAAACAGCCAATATTGAACGATCCGCGTTTGGTGACGAATATTGGGATATTTTCTCATTGGTCAATA AATACTGCCATTAATATTTGATATGGACACGTAAATGAATGGTAGGAAGTAGTAATCCAAAGGTGGACTTAGCTAGGAGA GAGAGGAGGCTAAAGAGTTTCTCAGCAGCTTCGTGTGCTCTGGGTTTAGGGTGTTGGTATTAATAGTAGTAATTAATAAT GATGATAGAGTCAACATAATCATAAATATCGGTGGAGAAAATTGGAAAATTGAGATGGTGGACATTGATTGGAGGAAATT GGATACAAATATTTTCTGACTTTATGTGATGGACGTCGCGTTCACGTTAGGGCCACCTTAATGCTATATTGGACTAAT
CDS sequence (LotjaGi6g1v0292300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAAGGATGGGGTCTCACTCTTGATTCATCTTCCTCTCAATCCCTCCCTCTCTTTCCATCCAAACCTTCTGCATC TCTCATCAACACCATGTTCCCCATTCACGGATTCCCTGTCAATCTTACCCGCAACACCAACGATGAACAACACACCGCTG ATGACAGCCGGAAAGTTGTCGGCGAAGTCGATTTCTTCTCTGATAGAAACAACTCATCGCCTCCTCCTGGCTATCTCGAC CATCATCAACATGCTAAATCTAATATATCTGTTAAGAAGGAGATTCTCCCCGAAGAAAAACCTCCCAACGTTAATACTGG TTTGCAACTCCTAATTACTGGGAACACTGGGAGCGATCAATCAACTGTGGATGATGGTGTTTCATCAGATGTTGAAGATA AGAGAGCCAAGACCACTGAGCTTGCACAGTTACAATCGGAGCTTCAACGCATGAATTCAGAGAATAAGAAACTCAAAGAG ATGCTCACCCATGTCAGCGGTAACTACACCGCTTTGCAGATGCATCTCACTGCATTAATGCAAAAGAACCACCGCACAGA AAATGAGGTTGTTGAGGGAAAATCTGAGGGGAAAAACCATGTTGCTGGTGGAGGAATGGTACCGAGACAGTTCATGGACA TAGTAGGACCTAGTGGTACTACAGCTGAAGTAGAAGATCAAGTATCTAATTCTTCTTCTGATGAACGGACACGATCGGGT ACACCTCATAACAATCATGTTGAAGCTGGAACAAGAGATTACGTGAGAAACAGTAATGGTAAAAATGAATTGGGCAGGGA AGAGAGCACAGATTCAGAGTCACAAGGGTGGAACGCCAACAACAAAGTTCAGAAACTGAACCCCTCTAATGCAGCTGTGG ATCAGTCCACTGCTGAAGCCACCATGAGAAAAGCTCGCGTCTCAGTTCGTGCTCGATCAGAAGCTTCCATGATCAGTGAT GGATGCCAATGGCGAAAGTATGGACAAAAAATGGCAAAAGGAAATCCATGTCCTCGAGCATATTACAGATGCACCATGGC AGTTGGTTGTCCAGTTCGCAAACAAGTTCAACGAAGTGCTGAGGACAGAACAATTTTGGTGACAACATATGAAGGCACAC ACAACCATCCACTGCCACCTGCTGCGGTGGCTATGGCTTCAACCACCGCTGCTGCAGCCAGCATGTTGCTGTCTGGGTCA ATGACAAGTGGAGATGGGATAATGAACCCCAATTTGCTAGCTAGAGCTATTCTTCCTTGCTCTTCTACGAGCATGGCAAC ACTTTCAGCTTCAGCACCATTCCCTACCGTGACACTTGACCTCACACACAACCCGAACCCTTTGCAATTCTCAAGACCGC AACATTCTGCACCGTTCCAAATACCCCAGAATTTCATGTCCGGACCAGCCTCATTTGCACAAGCTGCACCGCTTTATAAT CAGTCCAAATTCTCAGGTCTTCAATTGTCATCCCAGCAGGAAGTGGGTTCTTCACACCAATTGGCTTCTCAACAGCCACC ACAACAACAGCCTTCACTAGCTGATACTGTTAGCGCCGCCACCGCAGCCATCACCGCCGACCCCAACTTCACCGCAGTAC TTGCTGCCGCCATCTCCTCCATCATCGGTGGTTCTCATGCAAACAACAATGGCAGTCACAACAATAACAACAACAACAAC AAGAGTACAATGAGCAATTTTTCAGGAAACTAG
Protein sequence (LotjaGi6g1v0292300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKGWGLTLDSSSSQSLPLFPSKPSASLINTMFPIHGFPVNLTRNTNDEQHTADDSRKVVGEVDFFSDRNNSSPPPGYLD HHQHAKSNISVKKEILPEEKPPNVNTGLQLLITGNTGSDQSTVDDGVSSDVEDKRAKTTELAQLQSELQRMNSENKKLKE MLTHVSGNYTALQMHLTALMQKNHRTENEVVEGKSEGKNHVAGGGMVPRQFMDIVGPSGTTAEVEDQVSNSSSDERTRSG TPHNNHVEAGTRDYVRNSNGKNELGREESTDSESQGWNANNKVQKLNPSNAAVDQSTAEATMRKARVSVRARSEASMISD GCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRSAEDRTILVTTYEGTHNHPLPPAAVAMASTTAAAASMLLSGS MTSGDGIMNPNLLARAILPCSSTSMATLSASAPFPTVTLDLTHNPNPLQFSRPQHSAPFQIPQNFMSGPASFAQAAPLYN QSKFSGLQLSSQQEVGSSHQLASQQPPQQQPSLADTVSAATAAITADPNFTAVLAAAISSIIGGSHANNNGSHNNNNNNN KSTMSNFSGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| MobiDBLite | 7 | 21 | 15 | - | – | |
| PANTHER | 43 | 566 | 524 | 6.2E-197 | – | |
| PANTHER | 43 | 566 | 524 | 6.2E-197 | – | |
| MobiDBLite | 115 | 135 | 21 | - | – | |
| Coils | 134 | 161 | 28 | - | – | |
| MobiDBLite | 192 | 299 | 108 | - | – | |
| MobiDBLite | 222 | 258 | 37 | - | – | |
| MobiDBLite | 271 | 297 | 27 | - | – | |
| Gene3D | 303 | 380 | 78 | 1.5E-32 | ||
| SUPERFAMILY | 311 | 379 | 69 | 1.27E-27 | ||
| ProSiteProfiles | 313 | 379 | 67 | 30.01 | ||
| SMART | 318 | 378 | 61 | 1.2E-36 | ||
| Pfam | 320 | 377 | 58 | 1.4E-24 | ||
| MobiDBLite | 490 | 516 | 27 | - | – | |
| MobiDBLite | 548 | 570 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi6g1v0292300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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