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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0294400 |
| Transcript ID | LotjaGi6g1v0294400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Autophagy-related protein; TAIR: AT1G62040.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|A2YS06|ATG8C_ORYSI Autophagy-related protein 8C; TrEMBL-Plants: tr|I3S677|I3S677_LOTJA Autophagy-related protein; Found in the gene: LotjaGi6g1v0294400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61232023..61234702) extracted from Lotus japonicus Gifu genome v1.2.
AAAATTTATTATCTTTATCATGCCTTTTATTCATAAAAGCTTTTATCTTTTGGTTATTTAAAGGATCCTCATATAACTTA AATTCCTAAATTGAATTTGTTTTTGTTCAATCAATGAAGCTAACTTGCGAAAGAGGTGATCCTGAGCGTTTACAGAAAGT ATAAGTAGACGTTCCGTGTTCCACTCAATCTCAACAATCAATTCAAGATAAGAACAACAACAAACCCTAATTTCAACTCC ATCATCACACCACTTCAATCATCGATCCTCTTTCTCAGGTTTGTGAAATTGCTCTTGCTTTCTTCAATCATATTTCATAC TCTACCCTAACCCTCCTTCAATTTCTAATTGCAGAGGCCAATCGTCGATCTTCCGATTTCATCATGGCCGCCAAATCCTC TTTCAAGCTTCAACATCCTCTGGGTCAGTACCTTTCTATAAATTGGTTTAGTTTACATCGAAAGTCCAAACCTTTTGATT GGTCGGATTTAAAGTCCACGCCTTTTATTTTCTAAATTTTTGTTTCCTTTTTCGATCATGGATAAGCTGGATTTTTAGTT TTTTTTTTTATATATTTATGCGGATAGAGGAATGAAAGTAGTCTCCGTAGGATAGCTCAAGTGGTAGGAGCTGGGGACAT ATGGGTTGGGTAGGGGAGGTCCAGGGATGGATTCCATACTGGTAGTGACAATTTATCTTTCCGATGTAAAAAAAAAAAAA ATGAACGTGGTTTCTATGTTCACAGGAGTTTGTTAGTTTTTCACTGATGAGAGTCTAAAACCTGTTTTCATGTGTAAAAA TTGGTGCTTACAGAAAGAAGGCAAGCTGAATCTGGTCGCATCAGGGAGAAGTATCCTGATAGAATACCTGTAAGACTGTA CTTCCTATAGAATATAGATGGATTGTGACCTTGTTTATTATTTGTTAAAATTCATTTGTTCAATTATGGCAATTGTGTGT AGGTGATTGTGGAGAAAGCTGACAGAACTGATATTCCAGACATTGATAAGAAGAAGTAAGTGGTTTTCTTATGCTATTCT GGCCCTTGTGATTAGTTTCCTGGCTGCCCTTTTTGTATCTTGATGCTTTTTGTGAATATTTTGGAATGTTTTAATTTTAT CTGAGTCACCGGTGGTGATAGTGGTGAAGTATGAAATGTAACACCCGTGTTCAATTGATACTTTGGCATTCCTATAAAAT GCTGGGTGATAATCATATTCTTGTAAAATGTTGGTAGCCAGATAGTTACTAATAGGATTTGATGATTTTGTACCATTGTT GAAGCTGTGAAGCATAGTTGCTAAGAAGTTTGTGTGTGCTGCTTCATAACTTCATTTTATTAAGGTATTCGAAAACGTTT AACAAAGTGAGGCCAGAAGGCACAAATGATAATCTTGGTGCAAATTCTATTTGACCAGAGTGGAGCAGAGTATTTGAATC AGCCATGAATTTTTGGTCTCAATGCATTGGCTCAGTTAATTGGCCTCCAGCACTTCAGCCTTGGGCACTACTGCTTGACT TTGTTATGGTCTAGTTTGTAGAGTATTTAACTGAACAAGAAATATGGTTGGCTAAATATTTAAGACCAACTTGCTGGGTA GGGATTTTGGGTAATATGGCTTATACATAGTGATGGTTATGGATATGTTTGGATGAGGGATTGTTCTGAATCTGATTAAT ATGCTACCACCGAATGAGACTGATATTTTTTGAGCATGTCTTGAACATTGTATGAGTTAGATATGAGTATTGAAACTCAG AGGACCAAACTTGGTTTTAGTTGCATATTCAACAATCAAGAGCTAGATATATTAATCTTGATAAATACATATACTTTATC TGACTCTATTAATTAGTGGTTACTCATTTGGTTCTGTTGTTCTCGTGGTGCTGTAGGTACCTTGTCCCAGCTGACTTGAC TGTTGGTCAGTTTGTTTATGTTGTCCGCAAAAGAATTAAGCTAAGTGCAGAGAAGGCTATTTTTGTTTTCATCAAAAACA CTCTACCTCCAACTGGTAAGTGTTCGGTCATTCGATTGTTGTTTTTGTTCCTTCTGGCAGTGAGTAGTATTGAACTAAAT CCTTTGTTGTTGCAGCTTCATTGATGTCTGCTGTTTATGAGGAAAATAAGGATGAAGATGGCTTTCTTTACATGACTTAC AGTGGAGAGAACACCTTTGGATCCCACTAGGCAAATTCATGACAGCCTCTGTACATAGCTTTCCTAATATGTAAATCCTC TGCTGTCAACACATGGCCTATTAAGAATTTTCATCCTGCATTTCTATTATGGTCTCATTATCTTCGAGTTATGAATTTCA ATTGAATTTGGATTTGGTTACCACGTATTTAAATTTTCGGTTTTCCTATGTAACCAAAAATATTATGGGTTGTTTGATTA CAGTTAAATTATCTACTTTATGCTAATTTGGGTGAATATTACATTGCATTATTGATGCAAATATTCGTAGTAAAGTGTCC CTTGCATTAAGACTAGAACAAACTCTACAGAATAAAGACTATTTGGATAAAAAGTAAGGCTAATTTCCAATTGAAAATTG TAAAGGAGCATTTTAAAAATAGGAAATTGGCTTTTGGACAAGGAAAAAAATGTGTTGTTGACACTCCTTGAGTTATAAGT TATAACTGTGATTAAAAAATGAAGTTAACTGAAAATTTTG
CDS sequence (LotjaGi6g1v0294400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCCAAATCCTCTTTCAAGCTTCAACATCCTCTGGAAAGAAGGCAAGCTGAATCTGGTCGCATCAGGGAGAAGTA TCCTGATAGAATACCTGTGATTGTGGAGAAAGCTGACAGAACTGATATTCCAGACATTGATAAGAAGAAGTACCTTGTCC CAGCTGACTTGACTGTTGGTCAGTTTGTTTATGTTGTCCGCAAAAGAATTAAGCTAAGTGCAGAGAAGGCTATTTTTGTT TTCATCAAAAACACTCTACCTCCAACTGCTTCATTGATGTCTGCTGTTTATGAGGAAAATAAGGATGAAGATGGCTTTCT TTACATGACTTACAGTGGAGAGAACACCTTTGGATCCCACTAG
Protein sequence (LotjaGi6g1v0294400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAKSSFKLQHPLERRQAESGRIREKYPDRIPVIVEKADRTDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFV FIKNTLPPTASLMSAVYEENKDEDGFLYMTYSGENTFGSH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 119 | 119 | 2.6E-60 | – | |
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 3 | 119 | 117 | 1.2E-75 | – | |
| PANTHER | 3 | 119 | 117 | 1.2E-75 | ||
| SUPERFAMILY | 4 | 118 | 115 | 5.43E-43 | ||
| CDD | 13 | 115 | 103 | 1.18334E-70 | – | |
| Pfam | 15 | 118 | 104 | 3.4E-51 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0294400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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