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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0294500 |
| Transcript ID | LotjaGi6g1v0294500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Senescence regulator; TAIR: AT4G04630.1 senescence regulator (Protein of unknown function, DUF584); Swiss-Prot: sp|A2RUB1|MEIOC_HUMAN Meiosis-specific coiled-coil domain-containing protein MEIOC; TrEMBL-Plants: tr|A0A0L9VFG6|A0A0L9VFG6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0294500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61242972..61247842) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCAAGCTAGGAGAAATGAGACTGATTAAGAAAGTAATTTGACCTGGCTAGGTAAGGATAGGGTATTGAAAGAAAAGC AAGGGAGATTCCTGATATTATTCTCTTACACTTCTTTTCTGCTTTTTGATTCCCAAGGACAAGGAAAAAGTCCATTTTAT CTCATTAGCCACCCCAGTACATTAGGTGGAAGAGTTTCAGCTATCTGTATCTATATATACTGAAATAGGAAACTCTGTCA TCACCACTTATAGCTCATTCCCCAAACACTCATCTGCTTTTATTTTTCATAAGCCACTTCATCCATTCCATCTAGGTGTT GCAGCAAGCATCAATGGCAGATCAAGGTGTCTTTCTGAGCAAAAGCAAAGGTTTTGGTGGCGGAACAAGGGAGGAAAGAG ATTTCGATGAAGATCTGTGGGGTGTTGTAGCCAAGGAAAGGAATGATTTTGGCCCAAAAATCACAAGAAATTTTCCAAGG GCTAAAACATCATCCACTTCTGATTCCCCTTTGGCTCACAAATCTTCAGCACCTGTGGACATTCCTGACTGGTCAAAAGT TTACGGGAAAAATTGCATGAAGGGTTCAAGGGATGGTGGTGTAAGCCACAACGGTGATGAAGGTGATGATGAGGATGATG ATGATATGGTTCCTCCACATGAATGGCTTGCTAGGAAGCTTGCAAGGAGCCAGATTTCATCTTTCTCTGTGTGTGAGGGA ATGGGAAGGACCCTGAAAGGCAGAGATCTTAGCAAAGTGAGGAATGCTGTTTTGACCAAAACTGGCTTCATAGAGTAGTT GTTACTTAGTGCATAGTGGAGTAGTCACAACCATAACCATCTTCCATCATATAACATCAAGTTTTGTCATCACAATCAAA TCATCCATCATTGTGATCCCATGCCATCTTTTTGTTTTGATTTTTCTCAGCAATATATGGCATATTATGTATGGAATGTT GAATCTTGCTGGTATGAAACCAGAGCTGCATTGTTTGTTTTGTTCTTTGTGTTTTTTGTTCTAAGTTTTTCTGGGAAAAA AGGGGGCAAATCTGAAACTTTTGAGTGGATTTCTAGTATATTTTTGTTATGAAACAAGCCTATTTTAATCCATGCAACAT GTAATTTTATGTTACTATTGGTTATTATGATTATTCAAATATAATCCCTTGCTTTAATGTCTACTTTTATTTAAACTCAA TGAACTTTAGATTGTAGATTTAATAAGCAAAACAGACCAGCACAAAAATTTCTTTTTCAAAATGATGAATCTGACTGACA TCCTTTTTTCATTAGAATTAGGGGCCACCACCAATATGGTATAAAGAAAGAATAAACTATAAAGTTAAAAGAGCATAATG CCATGCATTCCTTCTTGATCCTGTTCGAATATGGGGGAAAGAGGAAGAACAAAAAACTTGGGTAATCCTTTCTTGAAGAA CTTATTGTAAAAAGTTAAGCATTGATAACTCTAGTTTAGAGAACATGTTGTCTCATGGACAATATCTCCCTTTTGCCGAC ACAAATCAGAATGACTCATTTTGAGGCGGATTTGGGAGGCTTCAAAATGGCTAATGTTTAATTGGGAATGCAGGATATCT TTGGGAAAAGTAGAGGTGTTAAATTAGCCCATGGGCCACGCCCGTAACAGCCCACCAAGCCCCATATTTTGGCCCTCACT TTTTATAGCCACTTTGCCAGGCCAGTTCAAACAATAATACATTTGCAGCCACTATAGGCTTTTTCTCCTCCCCCTCCCCT CCACAATTTTTTTTTTTAATTCATGTACCATTATGAGATTATGGTTTCTAATGTCCTACCCTTCTTCCTTTGTGCTGGTT GGTAATTCAGTAAGAGGTTAATCACAACTTTAATTTGTGAATTTTGATTTGCATTTTTGCCTTGAAAAATCCTATTTCCT TTTGGAGGGTGTTCCTACATGAGATGTGGACTTATTAGGCCGTTGGATCGCCGCGATCTTAGTCTTCTAGAATTTTGTGA ATATATATTCTCTCATCAATGATCACTCGGCTGATTAGTTATAAGATCACGCCCAAGTTAAAGAAACATGACATGGTAAT AATGGCATCAAAGAAACGTGATTATGAAAATAATGACATTATGACTTAGAACACCATAAATTTTATAATGTAATAAATGT TACACACTATAAAAAGATAGTGGACTAGCGGAAACATATGCTCACTTTTGTACTTGAAGACTATGTTAGAAAGAATGTTG ACATCCCTTGGTGAAGAGGGGGGTATTGAAGCAAAAGTAAGGGAGGTTCCCAAGAATAAGGAAAAAGTCAATTTTATCTC ATTAGGCAACCACAGCACCATTAGGTGGTGGAAGAGTTTCAGCAAGCATCAATATGTCAAGCAAAAGCAGTAAGGATCAC GAGAAGGGAAAAATGAAAACAAAGGCTAATACAGCATCCACCTCAGCACCAATTGACATCCCTGGCTCAAAAGAGAAATC CATGAAGGCGTCAAGCAATGATGAGGAAGAAGATGATACGGTTCCTCCACATGAATACATTGCTAGGAAGCTCGCAAGGA GCCACATTTCATCTTCCTCTGTGACTGAAGGGAAGGGGAGGACACTCAAAGGGAGAGATCTTACTAAATTCAGGAATGAT GTTTGGAAAAAAACTGGCTTCATAGAGTAGTAATTAGTTAGTACTTAATTAGTGGAGTAGTCACTACCATAATCTTCTTA TAAACTTCAAATTTAAAATTAGTGTTGGCTTCATATATATTGTGTATATATCAATATCAGTATGGAAGATTTGTATGTAC AATATATATATATAGCTTAGTGTTTTTTATTTATGACCCAACTTAGTGTATGTTCATACATGCTGGACTATAAGCCATGC AAACTTGTTTGTTTAAGTCTAAGCCCAACCTATTTAGTTAAACATATTTTGTAAAAAATATGAACATTGTATTGACCAAA AAAAAATGAACATTGTCTATTTAATAAATGGGTCGGGTCAGATCAAACCCTTAACGAGTTAGGTCACGAGCCCCTAGTAT TTTCACTCTTAGAAATGGAGTACATTCTTATCTCATCCTTATATTTATATTGTGAAGATTTATATCCCAATTCGCATCCG TATAGAAAAAAAAAATCTCAAGATCAAAGCCCCAAATGGAGTCGTCTTCACTAAATCTCAATAGTAAGATTAAAATTGTC ATCACTACTTGTTATTTTCATGGGTTAAATATGTTTTTGTCCCCATAAAATAGTGAATTATTAATTTTGGTCCATCAATT TTTTTTTCAAAATATATTTCCAAGTTTTGAAAATATATATATTTGAGTCCCTAAAAAAGTGTGAGGGACTAAAACCAAAA TTCTATGACTGGAAATACAATTTTAACAACTGAAATTTAGTAAAAAAATAATAATCATTTAAAAAAACTTTTTTTAAGTA TTGATTTTCTAGATACCAAAACATGGATATTTTCATAAATTTGAGATGAATTTAAGTTTTTTTTTTTCAAATGCTCAAAA CCAATAATTCAATTCTATAGGTATAAAAACATAATTCACCTTATTTTCAAGTTTTGCATAGTACGACACTTATGTTGGTA TTATACCAATATAAGCCTCCATATTGTACAGATTGATATATTATATACATATCTAGGGGGTGCTCAAGTACCTCACCTCC TCTTAGGCTTTTTAAATTTTGTCCTGTTTTTCCTTCATTAGTTTTTTTTCAAGAGGATTTTCCTAGTAAAATTTTAATGA GACATTATTTTTAAAGTCTCGTCTCCAAGGAGGTTATCTTTCTTATGTGAAATTTTGTGTTGTATTTTTCTTGCTTTTAT TTCTCCTTATATTGGGTTGAAGTACTTCTTTTAAATAAATTCTTTGGATTATAACCTCAATATCTATAGTCATCCCTACT TTGCACATAACTACTAAATTAACATTAATTATTTTGAAATAATCAGATGCAAATAGAGTTTTTTTTTTTTGAAACAGAGG CGCAAATATATTCAAGGTCAATGAGTGTTTGCCCCCTTTTACAAAATTTATTTAAAACGTGATTTTTATATTTATTATTT AAATTTAAAAGGAAGGACCAAATAAACATTTATTGCATGAGTGTTAATGAATAGCACATGAATAAAGAGCACTTAAATAT CTTACTTTTTTTGTCAAGAATTTTGAATAAAACATTGTATAGTTGAAAATATTCTCCTCACTGAGATGGCAATGGGTCCC ACTGAGATGGCAATGAGTCTCGGACCCATTGGGTACCCGCTCAAAATACTCATAATGGGTACGGTAAAAACCCGCTAGAT GAGTATGAGGTTGGGTATGGGTAATTACCCGCAAAAATTAGTGGATACGGGTGCGAGTATGGGTAGTATAGTACCCAACC CGCCCCATACCCGCACATACTTTATTAATTATTTTTATTATATATACACACTTTAAAATATATATATATATATATATATA TATATATATATATTTCAACAAACTAAATTAAAGTAAGTTTTTAAGTTACTCTTTTAAAAATGAATGGTTTTACATATTAA ATATTTAGATAGTCTTTTGTATTTTTAATTAATGCTCTTTATTTTATATATAATAGTAGTTATATATTATTTTCTTTTGG AGAATGAAAATTATATTTTTCGTTAACTAAATTGTGGGTAATGGGCACGGGTACGGGCATATAGGTACTCAGAGGGTACG GGGACGGGCATTCAAATTGCTACCCACGCGGATATGGGGACGAATACGGGTATCTTTTGAAAACGCGAGTACGGGAATGA GTACTATTGTACCCTACCCAAACCCTACCCATTGCCATCCCTCACAATAATATTTTAAAAAAGGCTTAAAT
CDS sequence (LotjaGi6g1v0294500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGATCAAGGTGTCTTTCTGAGCAAAAGCAAAGGTTTTGGTGGCGGAACAAGGGAGGAAAGAGATTTCGATGAAGA TCTGTGGGGTGTTGTAGCCAAGGAAAGGAATGATTTTGGCCCAAAAATCACAAGAAATTTTCCAAGGGCTAAAACATCAT CCACTTCTGATTCCCCTTTGGCTCACAAATCTTCAGCACCTGTGGACATTCCTGACTGGTCAAAAGTTTACGGGAAAAAT TGCATGAAGGGTTCAAGGGATGGTGGTGTAAGCCACAACGGTGATGAAGGTGATGATGAGGATGATGATGATATGGTTCC TCCACATGAATGGCTTGCTAGGAAGCTTGCAAGGAGCCAGATTTCATCTTTCTCTGTGTGTGAGGGAATGGGAAGGACCC TGAAAGGCAGAGATCTTAGCAAAGTGAGGAATGCTGTTTTGACCAAAACTGGCTTCATAGAGTAG
Protein sequence (LotjaGi6g1v0294500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADQGVFLSKSKGFGGGTREERDFDEDLWGVVAKERNDFGPKITRNFPRAKTSSTSDSPLAHKSSAPVDIPDWSKVYGKN CMKGSRDGGVSHNGDEGDDEDDDDMVPPHEWLARKLARSQISSFSVCEGMGRTLKGRDLSKVRNAVLTKTGFIE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 20 | 154 | 135 | 4.8E-47 | – | |
| PANTHER | 20 | 154 | 135 | 4.8E-47 | – | |
| MobiDBLite | 40 | 67 | 28 | - | – | |
| MobiDBLite | 47 | 62 | 16 | - | – | |
| Pfam | 47 | 154 | 108 | 2.5E-39 | ||
| MobiDBLite | 81 | 107 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0294500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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