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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0294600 |
| Transcript ID | LotjaGi6g1v0294600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Starch synthase; TAIR: AT1G11720.2 starch synthase 3; Swiss-Prot: sp|Q43846|SSY3_SOLTU Soluble starch synthase 3, chloroplastic/amyloplastic; TrEMBL-Plants: tr|A0A072V4Z9|A0A072V4Z9_MEDTR Soluble starch synthase III-1; Found in the gene: LotjaGi6g1v0294600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61256426..61258068) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGGACTTTGTATTCTCTGAGACTGAAAGTGGTGGAGTTTTTGACAACAAATTTGGAATGGATTATCACATACCAGT TTTTGGAGGTATTGTAAAGGAACCACCTTTGCATATCATCCATATTGCTGTTGAGATGGCCCCGATTGCAAAGGTAAGCT ATATTCCTTGTATTGTATCTTATCTCAATTTCATCTACATGTCTCTTCGCAGGCTTCTTTTATTGCCAAGGCTGGCATGT TTTAGGAATTTACTGTGAAGAGATTTTACTGTTTGTGCAGTGCTGTGTTAAAAAGTGGAATTTGAGATTTGGTAGGGCTG TAAATCAGCATTTTCATTTTGATGGAGGAAAAGAGAAGGGATAAAAAATAATTTCAAGTTTCAACCTTTGATGATATCTG AACTTCTGCACTTTGAAGGATATTAGCATTCAACCTTCCTTCAATATGTCAAATGTTAGAAAAGTTTCTTGAGTGAACAG AATGCAAATTTTAATAAGCTGAATTTTTTTAAGGGGTGGGGGGTATACATTAACATAACATTCCTCTGTTCTTCCCAATC TTCCTTCGTTTTCCTATATAACTCAAACCAGGAGTGCAAGAAAAGGACCAAAATTAAATGATAGGTAGGAAAAAAGACCA AAATTAAAGAGTAACAAATATGACCAGGAAGTTTATGAAATTGATTTTTGAGGTACTCCACAGGAATATTTATTTTGCTG GAGATCATAAAATATTAAGTTTTTGAGAAAATAATTTTTGTAGAGAGAGAGTCCTGCTACATTAATATATTTAAATATTT AAACATAGACAATCAAATTGCATCCTGATTTAGCTAGGCTGCTTCTGAAGGATAAATGTTTCGGCTCATCAGTTGTTATT GCCATTATTTTGTCCACAAAAAGGTTTTTAATTGTTAATTTGTTATGCAGAAGATAATTTTGAGTTATTTTAACATGTTC TTCTGTTTCTAATTGTGTTCACTTTTGGCAGGTTGGAGGCCTTGGTGATGTTGTTACTAGTCTATCCCGGGCTGTTCAGG ATTTAAATCACAACGTGGATATCATTCTTCCAAAGTATGATTGTTTGAACCTTAGCAATGTAAGTTTCTATTTTCTTTTT GGTTTCTATGGTACTTCTGTTACATCTCATATTCTGCATTGCATATGTAAGGTCTATTCCTTAATTCACGGACTTTTATT GTCTGTTCCTAACCCCCTATTGAGTACAGCATGATGTTGTAATTATTATTGAGAGTGATATGTATGAACTTCAATACGAA ACTTGGTGACAATCAAGGGGATGAGGGAATCAAATATTGTTTGATGGCATCTTCATGAAAGTGAATGGCTTGTTGAGCAT CTGCATCAGTGGCAAGATAAAAAAGGCTATTGTTGAACACTTCCCTGATCATTTTGTTGGAAAATTGCATATGTCGTACT TGTTTCAGTTAGTTTTTTTTATTAGTTGCTAATTATATGGCTTCTAATGCAGGTAAAGGATTTTCAATTTCATAAAAACT ATTTCTGGGGCGGGACTGAAATAAAAGTATGGCATGGAAATGTTGAAGGCCTCTCTGTGTACTTTTTGGAGCCTCAAAAT GGGTAAAGACTTTGGTTCTTTATTGTCCTTTTCACTAACATAA
CDS sequence (LotjaGi6g1v0294600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGACTTTGTATTCTCTGAGACTGAAAGTGGTGGAGTTTTTGACAACAAATTTGGAATGGATTATCACATACCAGT TTTTGGAGGTATTGTAAAGGAACCACCTTTGCATATCATCCATATTGCTGTTGAGATGGCCCCGATTGCAAAGGTTGGAG GCCTTGGTGATGTTGTTACTAGTCTATCCCGGGCTGTTCAGGATTTAAATCACAACGTGGATATCATTCTTCCAAAGTAT GATTGTTTGAACCTTAGCAATGTAAAGGATTTTCAATTTCATAAAAACTATTTCTGGGGCGGGACTGAAATAAAAGTATG GCATGGAAATGTTGAAGGCCTCTCTGTGTACTTTTTGGAGCCTCAAAATGGGTAA
Protein sequence (LotjaGi6g1v0294600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMDFVFSETESGGVFDNKFGMDYHIPVFGGIVKEPPLHIIHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKY DCLNLSNVKDFQFHKNYFWGGTEIKVWHGNVEGLSVYFLEPQNG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 124 | 124 | 3.5E-78 | – | |
| PANTHER | 1 | 124 | 124 | 3.5E-78 | – | |
| CDD | 38 | 121 | 84 | 4.30314E-25 | – | |
| SUPERFAMILY | 38 | 121 | 84 | 2.7E-13 | – | |
| Pfam | 38 | 122 | 85 | 5.0E-19 | ||
| Gene3D | 39 | 122 | 84 | 2.4E-22 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0294600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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