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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0294700 |
| Transcript ID | LotjaGi6g1v0294700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP synthase gamma chain; TAIR: AT4G04640.1 ATPase, F1 complex, gamma subunit protein; Swiss-Prot: sp|Q01908|ATPG1_ARATH ATP synthase gamma chain 1, chloroplastic; TrEMBL-Plants: tr|V4KJU8|V4KJU8_EUTSA Uncharacterized protein; Found in the gene: LotjaGi6g1v0294700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61268345..61269250) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGCTTGTGGCTGCTGCAAAAGTCAGAAGAGCTCAAGAAGCTGTTGTCAATGGAAGACCCTTCTCAGAGACCCTCGT TGAAGTCCTCTACAGCATCAACGAGCAGCTCCAAACTGAAGATGTCGACGTCCCTCTCACCAAGATCAGACCTGTGAAGA AGGTTGCCCTGGTCGTCTGCACAGGAGATCGTGGACTCTGCGGTGGATTCAACAACTTCATCTTGAAGAAAGCGGAGGCC AGAATCAAAGAGTTGAAGGAACTTGGTCTCGAGTACACCATCATCAGTGTCGGCAAAAAGGGTAACTCTTACTTCATTCG TAGACCTTACATTCCAGTTGATAGATTTCTTGAAGGTGGCACGCTTCCCACTGCCAAAGAGGCTCAAGCTATTGCAGATG ATGTTTTCTCACTGTTTGTGAGTGAGGAGGTTGATAAGGTTGAGCTCTTGTACACAAAGTTTGTGTCGTTGGTGAAATCA GACCCTGTGATTCATACTCTGCTTCCTCTGTCACCGAAGGGAGAAATCTGTGACATCAATGGGAACTGTGTGGATGCTGC TGAGGATGAGTTGTTCAGGTTGACAACCAAGGAAGGGAAGTTGACTGTGGAGAGAGATACCATTAGGACTAAAACTGCAG ATTTCTCACCGATTTTGCAGTTTGAGCAGGACCCTGTTCAGATCCTTGATGCTCTGCTTCCTCTGTATTTGAACAGTCAA GTGTTGAGGGCGTTGCAGGAGTCACTGGCGAGTGAGCTTGCTGCGCGAATGAGCGCGATGAGTAATGCGAGTGATAATGC TAGTGACTTGAAGAAGAGCTTGTCAACTGTGTATAACAGGCAGCGTCAGGCGAAGATCACAGGAGAAATTCTGGAAATTG TTGCTGGTGCTAATGCTCTTGAATAG
CDS sequence (LotjaGi6g1v0294700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTTGTGGCTGCTGCAAAAGTCAGAAGAGCTCAAGAAGCTGTTGTCAATGGAAGACCCTTCTCAGAGACCCTCGT TGAAGTCCTCTACAGCATCAACGAGCAGCTCCAAACTGAAGATGTCGACGTCCCTCTCACCAAGATCAGACCTGTGAAGA AGGTTGCCCTGGTCGTCTGCACAGGAGATCGTGGACTCTGCGGTGGATTCAACAACTTCATCTTGAAGAAAGCGGAGGCC AGAATCAAAGAGTTGAAGGAACTTGGTCTCGAGTACACCATCATCAGTGTCGGCAAAAAGGGTAACTCTTACTTCATTCG TAGACCTTACATTCCAGTTGATAGTCTGCTTCCTCTGTCACCGAAGGGAGAAATCTGTGACATCAATGGGAACTGTGTGG ATGCTGCTGAGGATGAGTTGTTCAGGTTGACAACCAAGGAAGGGAAGTTGACTGTGGAGAGAGATACCATTAGGACTAAA ACTGCAGATTTCTCACCGATTTTGCAGTTTGAGCAGGACCCTGTTCAGATCCTTGATGCTCTGCTTCCTCTGTATTTGAA CAGTCAAGTGTTGAGGGCGTTGCAGGAGTCACTGGCGAGTGAGCTTGCTGCGCGAATGAGCGCGATGAGTAATGCGAGTG ATAATGCTAGTGACTTGAAGAAGAGCTTGTCAACTGTGTATAACAGGCAGCGTCAGGCGAAGATCACAGGAGAAATTCTG GAAATTGTTGCTGGTGCTAATGCTCTTGAATAG
Protein sequence (LotjaGi6g1v0294700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLVAAAKVRRAQEAVVNGRPFSETLVEVLYSINEQLQTEDVDVPLTKIRPVKKVALVVCTGDRGLCGGFNNFILKKAEA RIKELKELGLEYTIISVGKKGNSYFIRRPYIPVDSLLPLSPKGEICDINGNCVDAAEDELFRLTTKEGKLTVERDTIRTK TADFSPILQFEQDPVQILDALLPLYLNSQVLRALQESLASELAARMSAMSNASDNASDLKKSLSTVYNRQRQAKITGEIL EIVAGANALE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 117 | 117 | 7.2E-157 | – | |
| CDD | 1 | 246 | 246 | 9.73834E-81 | ||
| Pfam | 1 | 249 | 249 | 1.5E-59 | ||
| PANTHER | 1 | 117 | 117 | 7.2E-157 | ||
| SUPERFAMILY | 1 | 250 | 250 | 3.14E-60 | ||
| Gene3D | 4 | 125 | 122 | 4.6E-31 | – | |
| PRINTS | 52 | 71 | 20 | 4.1E-31 | ||
| PANTHER | 114 | 249 | 136 | 7.2E-157 | ||
| PANTHER | 114 | 249 | 136 | 7.2E-157 | – | |
| Gene3D | 154 | 164 | 11 | 5.6E-30 | – | |
| Gene3D | 169 | 245 | 77 | 5.6E-30 | – | |
| PRINTS | 196 | 215 | 20 | 4.1E-31 | ||
| PRINTS | 227 | 248 | 22 | 4.1E-31 | ||
| ProSitePatterns | 235 | 248 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | ATP synthesis coupled proton transport | The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis. | ||
| Cellular component | Proton-transporting ATP synthase complex, catalytic core F(1) | The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled. | ||
| Molecular function | Proton-transporting ATP synthase activity, rotational mechanism | Enables the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism. |
Expression pattern of LotjaGi6g1v0294700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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