Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0297300.1

Overview

Field Value
Gene ID LotjaGi6g1v0297300
Transcript ID LotjaGi6g1v0297300.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Stem-specific protein TSJT1; TAIR: AT5G19140.1 aluminum induced protein with YGL and LRDR motifs; Swiss-Prot: sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1; TrEMBL-Plants: tr|K7MAQ4|K7MAQ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0297300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:61480871..61486854) extracted from Lotus japonicus Gifu genome v1.2.

ATCATAACAACGTACAACTTATAAAATCTATTTTCTACTTTTTTTTATCTCTAATCTTTTTCTTCTAAACCAAAAAGAAG ATTGTACTACATGTTACAGGAGTATACAAGACCCGACCATGAGCATTTACCCATAATCCATCACTCTTAAACCCACATTA ATCTCATTAGGTTTTTTTCTTCCGATGAATGAAGTCAGGTTTAAAAACTTACCCAATCAATATTAATATTAGCCGCAGGT CAAGTATAACTCTTTTCAATCAATCACACAAACAACACTATTGTATGCATTTCAAGTTTCAACCAAGGAATTCACCTATT TTCATCCACCCTTGATTGTTCCTTAGCCAATCCAAGGGTGATTTTGCCATGCCATGCCATGCCATGCCTTGTAATCATCA TAATCATAATGGATAACGCCAAAAAGGTATCGGATCCTGATTCTCGTGCGAAAGGACATTGTAGGCTCCACATGCAAAAA ACAATTTCAATCTAGCTCTCAAAAATTTTAGTGACGGATTTATAGACACCAATTTTTTATTTTAAATAGTAGTTGATATT ATGAAATGACCGAATTATCCTCATCCATTCACTCTATATAACTAAGCACACACTACCATTTCATTTCCCATCCCATTCCA ATCCTGTCGTGAGGGGCAACTTGTATTTTTCTTTTTCTTTTTTACATAGAAAAATATGTTGGGGATCTTCAGCAGCTCAG TGGTGCCACTGCCGGAAGATCTGGTGGCCGCCGGCAGCCGAACTCCGTCGCCGAAGACGACGGCGAGTAAGCTGTTGAAC CGGTTCGTTGAGAGCAAGGCATCCGCGGTGTCCCTTCATGTAGGAGAGCACGTGCAGCTGGCTTACACACACCAGGGCGA GACTCCATGGCAACCCAGGTAAATTAAATTAACATCGATCACACCCCTCTTGCATGCCATCTATATTATTAGTAAAAAAA TATTTATCTGAGTGGATGTCCTCAAATAATTTGGAAAATCATGCAATAAGGGGAGAGTTAGGAAGGAAATATGGAAATAG AAATACTTCGAACTTGTGACTGATAATTGTTTTTGCCTTAGACTAAGTTATGTTTGAATCTGTACTCTCATCTTTATAAA GATCAGAGCCTATGTTGGTCTAAATCTGTGATTGATAATTGTATATGATAACAAATAATTATTTTTTTAGTAATAATGTT GTAATGTGTAAACGATTTGGAGGATTGATCCTGTTGTGGATGATCAAATGGCGATGATTTGATAATCATGGCGGTGGAAG AGGAAAATTGGAGCATCTTGCGTGGAAATTGATGCGTGTAGTACTGTGGCTGCTGATTGGCATTTTCTGCTGATTCATTG ATCTTGTTTTACATGATTGCCACGTGTACCGCACAAAAAGAATAGACGAAAAATGCATTAAAAAAATAAAAATAGCTTGT TGATTTGGGTTTTTTTTTTTATATCGGAAAGATAAATTGCATTTCTCCATTGATTGAGCCCTGGACCTCCCCCACCCCAA CTCATATGTCTTTAATTAACTCTTATCACTTGAGCTATTATTCAAGACAACCGTAGATATAGTTGGTTGAATTTATTACC AAAAAAGTTATTCAAATTTATATATAGACTATTGTAATAATTAAGTATTTTTTCTCATTTATATTTAGGAATCACATATT GAATTATTGATAGATGGTCCATACGAACCATGATCAGAAACCACAAGCCAAATTATGAGTTTTGCTAAAAAAATTAGAAA AAATAGTCCTGGTGAACATTTAACATGACCTCTTTATGAAAAAAAAGAAAAATCCATGAGTGAAACGGGACCACAAGACT TGTGGACATTATGTTCAACAAAAGTCTAAAAACCATGGCATAAATTGATGGAATTAGCTTAGGTAGAATGAAATAAGATG ATATTATATTTTATGGTTTGAATTATTATTTAAAATAAAATAGGGAACCCAATAAAATATTATGAAATGTATTTTATTCA TTTTACTTAATACTTCATTTTTTGGATTTCCCTTCACTATGGAAAGTATTATTTGGAGCCAATTTTTGTTATTTATTTCT TTCAATTCTATCATAAAAATTATTACATAGTATAACAAAAACCTTTTTTAATCATATCTCACTTATTTTATTGCCGTTTT CATAGATATCTAAAAATAAGTTAAGACACCATATAGTTATAATTATAAGATGTACCGAAAAAACTGAAATTATTTTTCTA GTGACTAAGTGAGACATTATTACTAATTAAAAATATATAGGAACAAATAAATTCTAGTATTTTGTTTACCCAATATTCTA GTAGAGTCTTGTCCTGATTAATAATGTTGGCTTTCTTTTTCATTTGTTTCGTATGGCCAATGGATGTGAAATTCAGTGGT CACCGCAACTGGATGGTTCGCTTGCAATTATTAGTCTTTAAATCTACATTATGAGACTATCCAATTCAAAATGTTGACTT TAATTTCATGAACTGTTGCTTTCTTCCTAGTCCTTTGCTTGTCTGATCCAAGGATAAGGATAACGTTTTTTTAGGTTGGT GGGACATGAATATGATGCTGTAACATATGCCGGTCCCAACATTTTGGAGGCCTAATAAAAATGGACCCCTAATAATTTTA ATGTTCAAAATTTTATCAGAATCATTATGTTGGTTCGTTTGGCAACTGACCTCTTGCAACCCGCCAGAGGTCGCGTGTTT GAATCCAAGCAAGTTACTAACCACTAGACCAGCTCAAGTCATTAATAACATCTTGAACATTAATTATTATAACTAAATTT TATTTTAGGGGAAAACTTAATGAGAATGTTTTTTGGGGCATCTTCTTTTTGGAGGCCCTGGGCTGTGGGCCTGCTTGCAC AGGTCCAGGACCGGCCCTGCTGTCACACCCCACACGCCATGGGATTTGTCATTTGAGGATGGTGTGGGGATGAGATATAG AAAGGGAAGAGAAAAGTAAAGGACTAAGTAGTGATGATTGTGAATTGTGATGAAAAATGATGAGAAATAATTGAAGAGGA AGGAGATATTATAAAGTGATAAGTTCATTAGTTTGGATAAGAAATGAGACATTATTTAAGGACAAAAGATCTTGATCACT AGATGAAGTTGAAGTACTTTTTTCTCTATTAATAGAAAGAGGTCAATTCATTTTTTGTCTAGAAATAAGTGGATCTGTTT AAACTGATGATAACCAACACCCAAACATATATAGCTTAAGAGTATGATCTGTATGGGAAAGTTAATCCAATTAAAAATTG CTTCCTTTGGATTAGATTTTATCATAATCAATTCTAAAATCCAGAATCTATTTACAAGAACTTTTCTCCATAATTAATTT TAGTTTCAGAATCAATTGTACAAGAGTTTTCAAACTTGCGTGTAGTGTTTGTTCTTTGTGTTTTGGTAGATTGCTATTTC TGAAGCCCTTTTTTTTTATTGATTTTATCTAAATGCTGAGTTGAAAATGGCAGATCATTTGCTGTGAAGGATGAGATATT CTGCTTGTTTGAGGGAGCTCTTGATAATTTGGGCAGCTTGAGACAGCAATATGGACTGGCCAAATCTGCCAATGAAGCAG TTTTGCTGATTGAGGCTTACAGAGCTTTACGTGATCGAGCACCCTACCCTGCCAATCATGTTGTTGGCCATCTTAGTGGC AACTTTGCTTTCATTGTTTTTGACAAATCCACTTCTACTCTTTTTGTTGCCTCTGTGAGTTATCTATCCAATCCAATTCT ATCACTGGTCTTGATCCACCACATGTTCTTTAGCTAACATTTCTTTGAATGTTCTGCTTTTATTATTTCTGACAGGATCA AACAGGTAAAGTTCCTCTGTATTGGGGAATAACAGCTGATGCCTGTGTAGCATTTGCTGATGATGTAGATTTGCTTAAAG GTGCTTGTGGCAAGTCACTTGCTTCTTTCCCTCAAGGTAGATTTAATTCCAATCTGGCTTAAATACAGTCATTTTTTGGT GCAGTCACTATAATCAAGAGATCTCAACTGTAGAATGAAGATCGAACCGTTCAGTTTCCGAGTTTAACAAATCATATGTA AAACACGTTTTTTTGGATGGGATTCATTCAATGGATGAGATTCAGTGATTGCACCTGATTGCATAGAATTCATTTCAATT TAATTTTGTGCTTTATGCATATATGTATTTGTGTCAGAGCATATCACAATTCAACACATTATGTCTGTTCTGTTTATCCT TTTCCCAAAATTTTCAAGCATTAATCCGACATGATTGACATGGTTCTGTAAATCTTTACAGGATGTTTCTACTCCACAGA TGTTGGAGGACTGAAATGCTATGAGAATCCTAAGAATAAGATCACTGCAGTTCCTGCTGAGGAGGAGGAAATTTGGGGTG CAACCTTCAAGGTAATAAGATGATGAAATTAGTTTAATTATAATGTTGTTACAGCTCTAGGTTGTCATCAATGGACACTG AAATAATTTTATTGAAACTTACCAGAACCAATGGTGTTACAAAATAGGGAAGCTCAACCACAGAATATCATTTATTTGAT TTACTCACTTGTTGGCGAATTTCAATTCATTCACACCAACACTAAGCTTTCTCTTTGATTTCATTTCACTCACTTTGTTT TTAATATTTCTCTTTTCTTTTCCTAACACATTATCTATTGTATCTTTTATTTTTTTATGTTCCCTTCCTATCTCTCACTA GGTTTAGGTGGAAATGGGTGTCAATCAAAATTTTCCTTTGCTGACTTACAACATTTGTTTTTTGCATTGAATTGAAACCA AGTTTTACATCATGGTATCTTATGTTCTATTTTGTCTGTGGGATGAATTATCAGGTGGAAGGGTCTGCTGTCCTTGCGGC CACAGAATAGAAGATCTTTCTTCAAATGTAGTACCTTATGATGCATGCATTTATGGATTGAAGTGTTTACAAGACATGCA TGAGGGGCCATATAAAATACCTTTAATGATATCTTTGAGAAGAATATATGGGAGTACTTGTAGAGTTTATTTTTGTCCAC TTTGTTCATTAGATTTGTCTGTACTATTAGATGTACAGCTGCGCTTTCCAATGTAAGAAAAATATGCGTACTGTGTACAT AAACTTCCACCTAGTAATGTAATTAAGTATCTTTGATGTTAAAATGGTCGCATTATCGTGATAAAACAACGTGTTTAGAT TAATTGGTATTTGGCGGCAGTCCAAACTGCTGCTAAAGCTTAAATCAAGCGTCGGTACAATGACATCGGGAAAAGAAATC AAGGGAAGGAAAACACTCAAATTTCCTTTTTGTATAAAGACCTAAATCCAAAAATAAAAATCATTAGAAATTCAACGAGG GTTCTTTTGCAATCAATGATATAAAATAATGGATATTTTTGTAATATTTTTTCCCAAACATGATTCAATCTTAATTATAT CCTATATAAGACTTATATTCATGTTTTAGGTGCACCCAAAAGCCTTCAAAAATGATATTTGTCACGCTAAGATAACACTT TTAAAAAGAAATTAAAGTGCACTCTATCACATAAGTAATATAGAATTGTAAGTCCCAAGTATCGAACCCAAGGGACTAAG TGATGATTTAGAGTTAGGAAGTGATTCAAAATGTTATGGAAATAAAGTTGAGATTGGTTATGATGTTGTGAGTAAGGTAA TAAGCGAAAGATAATAAAGTGATTAAGAATGAAAAAGACTTGAGATTGTAATGCTATTGGATCATCTACACCACTATTAT ATATGATATTCTAATTCCTGCCCTCTTAAAACATTAACTCACCGCCAAGTTGTTGTTAGTTGTCCTATCAGAAAACACTA ACATACATGCAACAATCATTGTAAGATGATCAATGAAAATAGACATGAAGTATATAAAGGTGTCCTATAGGGTATTTCAC CACCTAATCGTAGAGGTTGGAAACATGAAAGAATCTATTCTAAGTCTTCTTGTCAAGAGCAGGT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0297300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGGGGATCTTCAGCAGCTCAGTGGTGCCACTGCCGGAAGATCTGGTGGCCGCCGGCAGCCGAACTCCGTCGCCGAA GACGACGGCGAGTAAGCTGTTGAACCGGTTCGTTGAGAGCAAGGCATCCGCGGTGTCCCTTCATGTAGGAGAGCACGTGC AGCTGGCTTACACACACCAGGGCGAGACTCCATGGCAACCCAGATCATTTGCTGTGAAGGATGAGATATTCTGCTTGTTT GAGGGAGCTCTTGATAATTTGGGCAGCTTGAGACAGCAATATGGACTGGCCAAATCTGCCAATGAAGCAGTTTTGCTGAT TGAGGCTTACAGAGCTTTACGTGATCGAGCACCCTACCCTGCCAATCATGTTGTTGGCCATCTTAGTGGCAACTTTGCTT TCATTGTTTTTGACAAATCCACTTCTACTCTTTTTGTTGCCTCTGATCAAACAGGTAAAGTTCCTCTGTATTGGGGAATA ACAGCTGATGCCTGTGTAGCATTTGCTGATGATGTAGATTTGCTTAAAGGTGCTTGTGGCAAGTCACTTGCTTCTTTCCC TCAAGGATGTTTCTACTCCACAGATGTTGGAGGACTGAAATGCTATGAGAATCCTAAGAATAAGATCACTGCAGTTCCTG CTGAGGAGGAGGAAATTTGGGGTGCAACCTTCAAGGTGGAAGGGTCTGCTGTCCTTGCGGCCACAGAATAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0297300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLGIFSSSVVPLPEDLVAAGSRTPSPKTTASKLLNRFVESKASAVSLHVGEHVQLAYTHQGETPWQPRSFAVKDEIFCLF EGALDNLGSLRQQYGLAKSANEAVLLIEAYRALRDRAPYPANHVVGHLSGNFAFIVFDKSTSTLFVASDQTGKVPLYWGI TADACVAFADDVDLLKGACGKSLASFPQGCFYSTDVGGLKCYENPKNKITAVPAEEEEIWGATFKVEGSAVLAATE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45952
1 236 236 4.4E-150 –
PANTHER
PTHR45952:SF10
1 236 236 4.4E-150 –
Pfam
PF12481
2 226 225 3.7E-92
IPR024286
SMART
SM01172
2 226 225 1.2E-120
IPR024286
Gene3D
G3DSA:3.60.20.10
38 204 167 1.7E-15
IPR029055
SUPERFAMILY
SSF56235
52 204 153 3.47E-22
IPR029055

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0297300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…