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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0298200 |
Transcript ID | LotjaGi6g1v0298200.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Basic helix-loop-helix transcription factor; TAIR: AT3G06120.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9M8K6|MUTE_ARATH Transcription factor MUTE; TrEMBL-Plants: tr|A0A0S3S3P6|A0A0S3S3P6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0298200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61597015..61599057) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGATTCGTGTGAGAGACAAACCTAACTAGCTACCATAGTTATCTTGAACCAAATCAATCATGTCTCACATAACCGTG GAGAGAAACAGAAGAAGACAGATGAATGAACATCTCAAAGTTTTAAGGACCTTGACTCCATGTTTCTATATTAAAAGGGT ACTATTATACCTCTATTTCTCTAATTTCTTAATATTGGTTTGTTTGTTGTGTTTTTGTGATCGGTTCATGATGATTGAGT ATTTTTCATGGTGTTTGATTTTATTAGGGAGATCAAGCATCTATAATAGGGGGAGTGATAGAGTTCATCAAGGAGTTGCA CCAAGTCCTTCAAGCTTTGGAGTCTCAAAAGAGAAGGAAGAGTTTGAGCCCTAGCCCAGGCCCAAGCCCAAGAACAGTTA AGCCAAAACTAGTTCATCATGATCAATTTGATGGCTCCAATGGAATTGGGAGTAACAGTTTCAAGGAACTTGGAGCAAGC TGCAATTCTTCCGTTGCGGATGTGGAAGTGAAAATCTCGGGTTCGAATGTGATTTTGAAAGTGATTTCTCACAGGATTCC AGGACAAGTTGCGAAGATCATCACCGTTTTGGAAAGCCTTTCATTTGAGGTCCTTCATCTGAACATCAGTAGCATGGAGG AGACTGTCCTATACCAATTTGTTGTCAAGGTAATTAAGAGATTCTTTTGATAATTAATGGTTTCAGAAATTTCATATTTA GTAACATTAATCTCCCTTGATTTTTTTTAGACTTATATACAGTAATTAAAAAATACACAGTGGGATTCTCAATTAATCTA ATCTATTCTCGTAGCTATTAGAATTTATTGCTTGTCAATTAGGGTTTCAAGCCAATTTGATTATCAACAATTATTTATTT GTTCTTACATGAGCACATTATTTGTAAACACCAATAATCAAAAGCTCTAAATAACTTATTTATGAACTATCCATCTCTAG TTTTTCTTATCCAAAATGAATTCATAAATAAGCAGAAGGGGTGCTTAAACTCGGTTTACAAAAAGAAAAGAAAAGCTAAC TTTCAATCTCAAAGAGAGATTTGCAAGAAAAAAATGAGGGGGTTAAACAATAGCACAACCAGATGCAGTGTCAAGTACAA AGGAAATTAAAACCAAACAAGCCACAACAGGGTACCACACAAAAACAGTCACTGCAACACACAGCGAGAGGCACACAGAC AGACACAGCAAGTCGAGCAACAGTGGCCAAAGTACTTCCAAGCAATATCAATAAATACTCCACGAGCAGTGCTATGTGGC TCGAATGATCATCAATTTATTGAATAATTTGTTGTGGTGCTTTGTCCAGCAACATTTGTGTTCATTCAAAACTGAAATTC CTCGGCTATTCATGTCCCATGAATCCATACGTAAACTTCGAACATGTATTCTTCTAGGATATATAGCCAGCATATCATGC ATATAACAATGAACTAGTGAGAAATAACCCAGTTCTATGAGGATGCTGATCGCACACGAGTGAAAGAGAATATAAGTAAC AAATTTAATGTAAGAAATATTGAAATTTTCAAGTACATAAATATTGGATATATGATCTTTATCAATTAGAGTGTCCATTA TCTTTGCTTATTTTTTGGTTCAAATATAATTAATGAATCTAACTTGCAATATTTTGATTTTGGTTATTAATATTACTCAT CGTGCTCTTTTGTTTTATTCTTCTCACTATTACAGATTGGGCTGGGATGTCAACTAAGCCTGGAGGAACTAGCGATGGAA GTACAACAAAGCTTCTGCTCAGAATAAATGAAGTTAACTGTGCTGTGACTGTGAGGGTGTAGCCTTTCACAAGAGGCTTA ATTTCCTATCCTTTGTTAGTAAAATATAAGCAAGCATGTGAGAGAGACACGTGCACAAAAACAATTTATGTTTCTATTAA TTTGGGTTATTATATACATATATCATAAAATGTTGTCATAAACTTCATGGCAATGGAAGATATTCTGTTTCTTGATTATG ATAATGCACATGCATTATGTTTGCCAATGAATTTGAAGATTTC
CDS sequence (LotjaGi6g1v0298200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCACATAACCGTGGAGAGAAACAGAAGAAGACAGATGAATGAACATCTCAAAGTTTTAAGGACCTTGACTCCATG TTTCTATATTAAAAGGGGAGATCAAGCATCTATAATAGGGGGAGTGATAGAGTTCATCAAGGAGTTGCACCAAGTCCTTC AAGCTTTGGAGTCTCAAAAGAGAAGGAAGAGTTTGAGCCCTAGCCCAGGCCCAAGCCCAAGAACAGTTAAGCCAAAACTA GTTCATCATGATCAATTTGATGGCTCCAATGGAATTGGGAGTAACAGTTTCAAGGAACTTGGAGCAAGCTGCAATTCTTC CGTTGCGGATGTGGAAGTGAAAATCTCGGGTTCGAATGTGATTTTGAAAGTGATTTCTCACAGGATTCCAGGACAAGTTG CGAAGATCATCACCGTTTTGGAAAGCCTTTCATTTGAGGTCCTTCATCTGAACATCAGTAGCATGGAGGAGACTGTCCTA TACCAATTTGTTGTCAAGATTGGGCTGGGATGTCAACTAAGCCTGGAGGAACTAGCGATGGAAGTACAACAAAGCTTCTG CTCAGAATAA
Protein sequence (LotjaGi6g1v0298200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSHITVERNRRRQMNEHLKVLRTLTPCFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPGPSPRTVKPKL VHHDQFDGSNGIGSNSFKELGASCNSSVADVEVKISGSNVILKVISHRIPGQVAKIITVLESLSFEVLHLNISSMEETVL YQFVVKIGLGCQLSLEELAMEVQQSFCSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 188 | 188 | 3.9E-103 | – | |
PANTHER | 1 | 188 | 188 | 3.9E-103 | – | |
CDD | 1 | 54 | 54 | 3.43461E-11 | ||
ProSiteProfiles | 1 | 49 | 49 | 14.126 | ||
Gene3D | 1 | 66 | 66 | 1.2E-9 | ||
SUPERFAMILY | 1 | 67 | 67 | 6.41E-15 | ||
Pfam | 2 | 50 | 49 | 5.4E-8 | ||
SMART | 4 | 55 | 52 | 4.0E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi6g1v0298200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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