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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0299700 |
| Transcript ID | LotjaGi6g1v0299700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 45B; TAIR: AT1G55230.1 proteinase inhibitor I4, serpin (DUF716); Swiss-Prot: sp|Q9NWC5|TM45A_HUMAN Transmembrane protein 45A; TrEMBL-Plants: tr|A2Q224|A2Q224_MEDTR Proteinase inhibitor I4, serpin; Found in the gene: LotjaGi6g1v0299700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61752923..61754646) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAAAGGATAAGCATGGTTTTAATTTTATTTAATCATCTAGAAAGTCAGCGCTTCCCCATGTCAATCGTCATAGGT CTCTGGTCAGACACAAATAACTTTCCTTGTCACTCAAGCCTCCAAATATTGAACTTCAATAGAACTCTCTAGACCCCAAC ATCCTTAAAACCCCCACATCCCCTTTCTCTATCGCCCCATCAGCAAACCAAAATCCATTAAACTCTTTCTTTCTCTCTCT TCCTTCTTTCTCCTTAATTCTTCTCTGTTGCAAAACATAACATTTTTAATTAATTCATAACACCACCCACCACCACCAAC AACAAAATGGGCACTCTTGTGGGACATGTTGCACCAGGCTTAGGCTTCTTGCTAATTGGCCTATGGCATCTCTTCAACCA CATCAAGCTACACTGTCTCAACCCCAACTCCTACACTTCTCCACCATGGTTCCCCACATCCAAATCCAAGTACCTCGAAC TCTTCCTCATCATGGCGGCCTCAACCGCCTCCGTCGCCATGGAACTCTTCATCGGACCGGAACGCCACCAGCCTCTCGAC TCAGACGGAACCATTCCCTCCAACCACCTCCACAACTTCGAACACTCCTCCATCTCCCTCACCTTCTTCACCTACGCTGC CTTCTCTATCATCCTCGACAAAAAAATCCAAAACACTCAAACCAAACATGCCTTAACGCAATTGCTAGCCTCCGTGGCCT TCGCTCAGCAGCTTCTCCTCTTTCACCTCCACTCCGCTGACCACATGGGACCTGAAGGACAATACCACCTGCTACTGCAG CTCCTGGTATTTGTCTCGCTCACCACCACGCTCTTGGGAATTTGCTTTCCCAAGAGCTTTTTGGTGAGCTTCGCACGTTC CGTGAGCATATATTTTCAAGGACTATGGCTTATTGTTATGGGCTTCGCACTCTGGACCCCGGAGCTTATCCCTAAAGGGT GTTACATGAACGATGAGGAGGGTCACATGGTGGTTAGGTGTCATGATCATGAATCGGTCCACCGAGCTAACTCGCTGGTC AACATTCAGTTCAGCTGGTTCATCATCTTGGTCACAATTTTTTCAGTTTCTTTGTACTTGGTTATGGATAAATTCTATGG TGGTGGGAAGGTTGAGTATTTCTCTTTGGGGAATGAGGAAGAAGGAGGAGAAGAAGGTGATGACGTGGACGTTGAGTCGC AAAAGAGAAGCATAGTTGGCAATCCCATGAGCTTTATTCATGTGGGAAAAACGTTTTCACCTCTTGACATTGAAAGGTAG AGTGAGTGATGAAACTAGCTACTAGCAAGGATGATTAATTATATTATTTTGTGATTATGTGTGTACAGTACTATTAGGGT GGTGGGGTCCAGTGTGAGTTAATTAATTAAGCCAACGAGAATGTGGTTGGTTTAAGGAAACTTACTCTTGTGGGTTGTAC GAATTTTTTAATTTAAAGGGGGATATATATGGATGACTTGTATTATTTGATTTTGTGTTTTGGATGGTTCTAAAAGGGTT TCGTGTCCATACGTTGTGGAAATGTGCAAGAAATTTCCTTGTAAGGATTTTGTACCATGTTTATATGTTGAATTGATTTC AATTGTTTCATCTTTTTCAGCTAAAAGTTAGCAAAAGAGAATCTTTAATTTCAAGGAGATAGCGAGACTTTTATTGATGC ACTTGTTTAAATGACTCAAGAAAAAATTTGGGTTGAATCACCTT
CDS sequence (LotjaGi6g1v0299700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCACTCTTGTGGGACATGTTGCACCAGGCTTAGGCTTCTTGCTAATTGGCCTATGGCATCTCTTCAACCACATCAA GCTACACTGTCTCAACCCCAACTCCTACACTTCTCCACCATGGTTCCCCACATCCAAATCCAAGTACCTCGAACTCTTCC TCATCATGGCGGCCTCAACCGCCTCCGTCGCCATGGAACTCTTCATCGGACCGGAACGCCACCAGCCTCTCGACTCAGAC GGAACCATTCCCTCCAACCACCTCCACAACTTCGAACACTCCTCCATCTCCCTCACCTTCTTCACCTACGCTGCCTTCTC TATCATCCTCGACAAAAAAATCCAAAACACTCAAACCAAACATGCCTTAACGCAATTGCTAGCCTCCGTGGCCTTCGCTC AGCAGCTTCTCCTCTTTCACCTCCACTCCGCTGACCACATGGGACCTGAAGGACAATACCACCTGCTACTGCAGCTCCTG GTATTTGTCTCGCTCACCACCACGCTCTTGGGAATTTGCTTTCCCAAGAGCTTTTTGGTGAGCTTCGCACGTTCCGTGAG CATATATTTTCAAGGACTATGGCTTATTGTTATGGGCTTCGCACTCTGGACCCCGGAGCTTATCCCTAAAGGGTGTTACA TGAACGATGAGGAGGGTCACATGGTGGTTAGGTGTCATGATCATGAATCGGTCCACCGAGCTAACTCGCTGGTCAACATT CAGTTCAGCTGGTTCATCATCTTGGTCACAATTTTTTCAGTTTCTTTGTACTTGGTTATGGATAAATTCTATGGTGGTGG GAAGGTTGAGTATTTCTCTTTGGGGAATGAGGAAGAAGGAGGAGAAGAAGGTGATGACGTGGACGTTGAGTCGCAAAAGA GAAGCATAGTTGGCAATCCCATGAGCTTTATTCATGTGGGAAAAACGTTTTCACCTCTTGACATTGAAAGGTAG
Protein sequence (LotjaGi6g1v0299700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTLVGHVAPGLGFLLIGLWHLFNHIKLHCLNPNSYTSPPWFPTSKSKYLELFLIMAASTASVAMELFIGPERHQPLDSD GTIPSNHLHNFEHSSISLTFFTYAAFSIILDKKIQNTQTKHALTQLLASVAFAQQLLLFHLHSADHMGPEGQYHLLLQLL VFVSLTTTLLGICFPKSFLVSFARSVSIYFQGLWLIVMGFALWTPELIPKGCYMNDEEGHMVVRCHDHESVHRANSLVNI QFSWFIILVTIFSVSLYLVMDKFYGGGKVEYFSLGNEEEGGEEGDDVDVESQKRSIVGNPMSFIHVGKTFSPLDIER
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 316 | 316 | 8.3E-152 | – | |
| PANTHER | 1 | 316 | 316 | 8.3E-152 | – | |
| TMHMM | 4 | 23 | 20 | - | – | |
| Phobius | 6 | 23 | 18 | - | – | |
| Phobius | 24 | 51 | 28 | - | – | |
| TMHMM | 49 | 71 | 23 | - | – | |
| Phobius | 52 | 71 | 20 | - | – | |
| Phobius | 72 | 90 | 19 | - | – | |
| TMHMM | 91 | 110 | 20 | - | – | |
| Phobius | 91 | 110 | 20 | - | – | |
| Phobius | 111 | 121 | 11 | - | – | |
| Phobius | 122 | 141 | 20 | - | – | |
| TMHMM | 122 | 144 | 23 | - | – | |
| Pfam | 122 | 258 | 137 | 7.0E-52 | ||
| Phobius | 142 | 152 | 11 | - | – | |
| Phobius | 153 | 174 | 22 | - | – | |
| TMHMM | 159 | 181 | 23 | - | – | |
| Phobius | 175 | 185 | 11 | - | – | |
| TMHMM | 186 | 208 | 23 | - | – | |
| Phobius | 186 | 204 | 19 | - | – | |
| Phobius | 205 | 241 | 37 | - | – | |
| TMHMM | 237 | 259 | 23 | - | – | |
| Phobius | 242 | 260 | 19 | - | – | |
| Phobius | 261 | 317 | 57 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0299700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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