Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0300000 |
| Transcript ID | LotjaGi6g1v0300000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Endo-1,3,1,4-beta-D-glucanase; TAIR: AT3G23600.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q9ZT66|E134_MAIZE Endo-1,3;1,4-beta-D-glucanase; TrEMBL-Plants: tr|A0A151U0L2|A0A151U0L2_CAJCA Endo-1,3,1,4-beta-D-glucanase; Found in the gene: LotjaGi6g1v0300000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61783444..61787196) extracted from Lotus japonicus Gifu genome v1.2.
AATATTTTTGGATTGCATTGTCTGTTTCCTCAACCCACTTTTTGTTGAGCTGGGCTTTTGGCCCATGGTTACATGAAATT TCCCTACATTGACAAAAAAAGAAGTGAGTCATATGTTAGAACACATGTAAGAATGTAATACCAGTATCGTTATGTTTCTT GCAATTTGGATTGTGAGTTTTGACTTGTGGCATGAACTAACAAGTGTCATGACGTATTCAGTGACGATCTTATGTTATTA AACGTAATTGGTCAAGGCATTTTGGTCAATCCTCTCCAGAGATATTTGTAGTGGCGCTTTTCTTCTTTGTTACTATAAGC TACAAAGGTCAGAGAACTGTGATCACTATCACTTTTTGCTTGCAGCCATGTCAAGTCCTCAGTGTTTTGAGAATCCACCT AACCTGAACTCTGGTATCCATGGAGCTGGAACTGTCCTAGAACTTGGAGGACTTAAGTCCTATGTCACTGGACCTCAAGA TTCCAAATTGGCACTCATCCTAATTTCTGATGTATTTGGTAACAAAACCCTCTCAAATTTATTACTTCATTGATTTTACA AAAGCTTCACTTGTGCTTTTTACTTATGCATGTTCTCTTGATCAAGGAAAATGCAGATATTTCAAAACTGATTGAAAAAC CATCACATTTTGAAGATACTTGCAATAAAATCTAACTGTAAGTTGTTTTGAAATTATGTCAGGGTATGAAGCTCCAAATC TAAGGTAAATGAAATTTTCACTACTATGGTTATTTGTTCGTTAGATAAATGAAAATATTGAATCCCTCCAATGGGTGGAG GTAATAGAAATGTATGTTGAGGATTTATAATTTTCAGTCTTTGAACTTTTATGCTGCCACAAAATTAGGAAAAGTTGAAG TTTCACACTAGTTCATTGTAAGGAATGATCATGTTTTGGTAATAAGTCTCCCAGTTCTGTTATTATTAGGCTTCAATGCG TCATTGCTAAATCAGATTCAATGCCTCTAAGTGCATGTTTAGAAATCCATTTACAATTGATTCTGAAGTCAAAATTAATT TTGACGAGAAGCTTCTTTGAGTAGGTTCAATTCTGAGTGAGAGAATTGATTCTGATGAAAGGATGTTGTTCCAAACATGT TGTAAAATTATTTGCCATTAGCTTTAACAATCGCTCACTGAACAGGAAACTTGCGGACAAAGTGGCAGCAGCTGGATTCT TGGTTGTTGTTCCTGATCTTCTTTATGGTGACTACTTGGATCTTGATAATCCTCAATTTGATCGAGCTTCATGGTCAAAG GCTCATGGAACGGTTGGTTTCCTGTTCACAGATTCAATTTTGTTTTGTTAGAATATAAAGGAGATGAAAGAAGAACAAAG TCATCTCTAACTAAAGTGCTTCTATGTCAAATCATCAAGAGCATACATATAAATGATAAGAAAGCGGAAGCGTACCCGGA TTCATGACAGTCTAGAGGCGGAAGCGGAAATGAATCCATGATAATCCGAGTCCATGATGAAGTTGATATGGAACCATGTC CATGAGTGACTTGATTTAGAACTATGGACAATATGCACAATGCCTCACAATGAGTGTCTCTCTTCTAATGATGTGATGTT AGAAAAGTAAACTATGCATATACCTTGGGGACCATAACCCCTTATATAATAGGAACATACCCTTTCATCAAGAGTCATGA CCTAATGTTTTGTTATTTCTATTTCAGCCCATCATTAAAATAAAAATAACACTTATGGTATCTACACATTATAAAGCTCA TACCAAGTGAGATGTTATAAACCCCAAAATTAATCCATAGTAGATCACTCTTATAGGGGATAATATTTAAGATAAACTTA ATACATGATTATATGTGAGCCCACATACTAATATAACATGTTTCTCATCCATTCATATCATAACATTCTCTTCCATATCT GATTTTGAAGTTTTGTTTTTCTTCCATTTCCATATCTGATTTCATTTTGCATAACATTTTACTGTTACAACATGATTATG AAAATGTGCTGTATATTTTCCTTATAGGATAAGGGATGTGAAGATACAAAACCTCTAATTGCTGCTCTAAAGAGTAAAGG TGTTACAGCCATAGGGGCTGCAGGTTTCTGCTGGGGAGGTGAGTGACTCTTTTATTTATTCATTCATTTTTGCTTATACA ACTTCATTATCAATTAAAAAAGGAAAAACAAATTAGTGAGGGATGTGGAATAGTTAAACTTATTGGTTTTGTTCCAGGGG TGGTGGTTGCTAAATTAGCAATTTCTAGTGACATTCAGGCCGCAGTTATTCTGCATCCCGGTCCAATCAAACAAGAGGAA CTTAATGGTAAACTTGTGCTTATCAATTTTCTGGTGAAATGAATGATTATAGAGATGATTGACAAACCATTTTTTTTTCT TCAGAGGTGAGGGTTCCTATTGCTATATTGGGAGCAGAAATTGACAATCATTTCACACCAGAAAAGCTGAAGCAAGCTGA AGAAATGTTGTCTGCAAAAGCAGAGGTGAGAAATTCTAGGGGAATCCTTTGTTGATTTCTCCAGATAAGATTTCCTTCAC AAATCTAATTTTTTCTCTATAGTTTAACCCCTTTAAGTCTTTAACAGTATTTCAACTTTTATGATGAAGCAGCTAATAAC ATCCTAATATCATGTTTGGATCAATTTTTCTTTTCTCAAAATCAATTCTGGCATTCAAAAACTACCCTCAGACTTTCATG TAGAAGGACTTCCAAACACATTAAGTCATTTAGGATTTATTAATGAAGTGCAAATTTTCTCAATATATGAGCAATTGAAC ATTGTTGAGTGCAAACTTAACCTAACTTTGCCTAAATAAGCAGTATCATCATCAGTCATCACATGCTCAAATTATCAGTA GTTTCTCTATTGACTCCAAATTATTTGTGTTTTTATCAGATTGAAAGCTTTGTAAAGCTATATCCTGGTGTTAGTCATGG ATGGACAGTAAGATACAATGTTGATGATGAAGCAGCTGTTAAGAGTGCAGAAGAAGCCCATCAAGACATGTTGAACTGGT TTACCAAGCATGTCAAGTGATTAGTGAAGGTTGATGCCAATTATTGAAATCAACCGCATTGAGTTATGGTTAATGAAAGA ATACAATGTCAAAGAATCTCGGATTAGCTAGGAAAATGTTGAATGATATGTAAAGCAATTAGTATCTTTTTGGATGAAAG ACTAATTGTGTTTTTTTTTTCCCTACTTCTTTCAATCTTAATGATTTCTACTCTTCTCGTTTTAAATATATAGTTTCTTC TCACTAATTCTTACTTCTCATTAGCTATTACTTCTCATGCTAAATAGTGAAACTACTTGGTTTACATGATTTTGTTGACC GCTTGCAAGTATGTGTTTGTATGAACAATTGAACATCTTTTAAAATGTTCAAGTACATTAAGTTATTCCAGCTCCTGATG AAATAAAGGGTGTGAGATGGTTTCATGAATAAAGCATCCAAATGATATTGAGCACCATATATATCGTGTTTTTCAACATT GGCGCATGAATGAAGTTGTACTTAGTTGTTTTTCAGCATTTTCAAAATATATTTTCTGAAATAGTTGTTGACAATTTTGG GTTGGAGATTACTTATATTATTCAATTATTGTCCATTTAGCTATTATGTATGATGATAGAAAAAAATGATTGGTTAATAT TAAAATTTACCCCATTAGTGCCCACATTTTCCATACTCTCTAATAACATTGGATATCAATGTTACTCTATTTT
CDS sequence (LotjaGi6g1v0300000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAGTCCTCAGTGTTTTGAGAATCCACCTAACCTGAACTCTGGTATCCATGGAGCTGGAACTGTCCTAGAACTTGG AGGACTTAAGTCCTATGTCACTGGACCTCAAGATTCCAAATTGGCACTCATCCTAATTTCTGATGTATTTGGGTATGAAG CTCCAAATCTAAGGAAACTTGCGGACAAAGTGGCAGCAGCTGGATTCTTGGTTGTTGTTCCTGATCTTCTTTATGGTGAC TACTTGGATCTTGATAATCCTCAATTTGATCGAGCTTCATGGTCAAAGGCTCATGGAACGGATAAGGGATGTGAAGATAC AAAACCTCTAATTGCTGCTCTAAAGAGTAAAGGTGTTACAGCCATAGGGGCTGCAGGTTTCTGCTGGGGAGGGGTGGTGG TTGCTAAATTAGCAATTTCTAGTGACATTCAGGCCGCAGTTATTCTGCATCCCGGTCCAATCAAACAAGAGGAACTTAAT GAGGTGAGGGTTCCTATTGCTATATTGGGAGCAGAAATTGACAATCATTTCACACCAGAAAAGCTGAAGCAAGCTGAAGA AATGTTGTCTGCAAAAGCAGAGATTGAAAGCTTTGTAAAGCTATATCCTGGTGTTAGTCATGGATGGACAGTAAGATACA ATGTTGATGATGAAGCAGCTGTTAAGAGTGCAGAAGAAGCCCATCAAGACATGTTGAACTGGTTTACCAAGCATGTCAAG TGA
Protein sequence (LotjaGi6g1v0300000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSPQCFENPPNLNSGIHGAGTVLELGGLKSYVTGPQDSKLALILISDVFGYEAPNLRKLADKVAAAGFLVVVPDLLYGD YLDLDNPQFDRASWSKAHGTDKGCEDTKPLIAALKSKGVTAIGAAGFCWGGVVVAKLAISSDIQAAVILHPGPIKQEELN EVRVPIAILGAEIDNHFTPEKLKQAEEMLSAKAEIESFVKLYPGVSHGWTVRYNVDDEAAVKSAEEAHQDMLNWFTKHVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 240 | 240 | 2.2E-128 | – | |
| PANTHER | 1 | 240 | 240 | 2.2E-128 | – | |
| Gene3D | 27 | 238 | 212 | 1.3E-38 | ||
| SUPERFAMILY | 29 | 239 | 211 | 1.98E-28 | ||
| Pfam | 30 | 238 | 209 | 3.6E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi6g1v0300000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…