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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0301200 |
| Transcript ID | LotjaGi6g1v0301200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|C6TIE0|C6TIE0_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0301200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61873340..61875183) extracted from Lotus japonicus Gifu genome v1.2.
CTGTGCCAGAAATGGCCAGACCAAATTTCAGGTACGGTGGTTCTATTTCGGGAAGTTACGCCGGTGAGAGATCAAAACCA ACTTTCGCTCATAGTTGAAGAACCATTTTCATATTTATCTCAAATCTTTATTACAATAGTATCAGGTGGCGGGACAGTGG GAGCAACGACGCCGTTGATGCAGGGAACCCTAACACCACCACCACCGTCACTCTCCTCCGCTTCCAACCCTTCCGGCGAC CCATCGCCGCCGCAGCCAATGCTCCCGTCAGAAATCATGGAGGACATTCTGTACAGGCTTCCAGTAAAGCCCCTCTCGCA ACTTCGCTGCGTCTGAAAGTCCTGGAATTCCCTCATCTCCGATCCCAAATTCGCCAGAAACCACCTCCGTCGTTCATCAG TGAACCCCACCCGTCACCGCCTCATTTTCACCCCTTCACGCATTCTTCAGTACTACCCTTTCGTTCAAACCGTCACCACC CACGCCATGCGCCTCGACCAACCTCTCAACAATCCATACCAAGACTCCGTCGTTGTTGCCTCTTGCGACGGCATGCTCTG TATCACCACCAATCAACAACGTGACACCGTTTTATGGAACCCTTCCATTCAGAAATCCAAGAAGTTGCCCACCTTAGAAG ACTCAAAGCCTTATTTTGGAATTAGGCCCATTGTGTATGGGTTTGGTTATGATCATGTCCTTGATAATTACAAGGTGGTT GCGGTTTTTTGGGATGTTCGTGTAGCCAAAATTCACACTCTGGGCACTGATTCTTGGAGAATGATTAAGTATTTTCCTTC TAGTCCAAGCTCTGATGCAGGACAATTGGTTAGGGGCACACTTAACTGGCTCTCAGTTGATTCGCGGATTATTTCGTTTG ATTTGGTGAAGGAGTGTTGTCAAGAACTCTGCCTTCCTGATTATGGAGGAGGGGGTGTTAATGTGACATTGGAAGTGTTG AGGGATTGCTTGTGCATCTTTTGTAATGCACTCACTTTCGCAGATGTTTGGGTTATGAATGAATATGGAAATAAAGAGTC TTGGACCAAGTTGTTCAGAGTTCATGACGGCTTTAATCCGTTGTGTACCAGCGTGCTTTATTATGTATACGAGGATGATG AAGTGGTCGTCATGTCCAAGACAGGTGCGATTGTTTATAATTACATAAATGGCACTTCTAGGAGTCCTGATACTGAATAC AGCACAAAAATTTCGGAGGGGATGGTCCCATACCGCTACATTGAGAGTTTGATATCACCCTGTCTTTCATAATTAATATA TCTTTGATATATCTAGAATTATATGACATGTTGTGTCACGATGTTCTTGAAGAGAATCCAGTTGATACTTGATGGTCCAT GGAACTGCTGTGTGAGGAATTTCTTTGTTAATTTCAGTTATTAGATTATCTGGTTGTTTGTTATTTCATATGTGTTGCGT TTTATATAGTTCACAATCAATAAACCGTGTGTTGCATTAGATGGTTATTGTTATTGATTAGTTTTCTAAGATTGGAATTG AGACTTAGATATTATGCAATGTCATTAGATGTTTCTTGAAGTGCATGTTAATTGCTGCACAAATTTCCATGATGTTTCCT TCAAATCTTGCATGATACATTATGAGCTAAACAAATCATAATTTAACATACATTTGGCTCTTAATTAAGTTCATGATTTG CTTTTACAAGTTCATAAATAACTCATGTTTTTCTTTTGTGAATGGAAAGAAAAGCAACAAACAACTAATGCAGACTGTTG CATAGATGAGCTCCGGTCTTATAACAGTACATGACCATTTGGGGGGTTTGAAATCCAATTTTTGCTGAAGTTCGAATAAA TTTC
CDS sequence (LotjaGi6g1v0301200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCCTCGACCAACCTCTCAACAATCCATACCAAGACTCCGTCGTTGTTGCCTCTTGCGACGGCATGCTCTGTATCAC CACCAATCAACAACGTGACACCGTTTTATGGAACCCTTCCATTCAGAAATCCAAGAAGTTGCCCACCTTAGAAGACTCAA AGCCTTATTTTGGAATTAGGCCCATTGTGTATGGGTTTGGTTATGATCATGTCCTTGATAATTACAAGGTGGTTGCGGTT TTTTGGGATGTTCGTGTAGCCAAAATTCACACTCTGGGCACTGATTCTTGGAGAATGATTAAGTATTTTCCTTCTAGTCC AAGCTCTGATGCAGGACAATTGGTTAGGGGCACACTTAACTGGCTCTCAGTTGATTCGCGGATTATTTCGTTTGATTTGG TGAAGGAGTGTTGTCAAGAACTCTGCCTTCCTGATTATGGAGGAGGGGGTGTTAATGTGACATTGGAAGTGTTGAGGGAT TGCTTGTGCATCTTTTGTAATGCACTCACTTTCGCAGATGTTTGGGTTATGAATGAATATGGAAATAAAGAGTCTTGGAC CAAGTTGTTCAGAGTTCATGACGGCTTTAATCCGTTGTGTACCAGCGTGCTTTATTATGTATACGAGGATGATGAAGTGG TCGTCATGTCCAAGACAGGTGCGATTGTTTATAATTACATAAATGGCACTTCTAGGAGTCCTGATACTGAATACAGCACA AAAATTTCGGAGGGGATGGTCCCATACCGCTACATTGAGAGTTTGATATCACCCTGTCTTTCATAA
Protein sequence (LotjaGi6g1v0301200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLDQPLNNPYQDSVVVASCDGMLCITTNQQRDTVLWNPSIQKSKKLPTLEDSKPYFGIRPIVYGFGYDHVLDNYKVVAV FWDVRVAKIHTLGTDSWRMIKYFPSSPSSDAGQLVRGTLNWLSVDSRIISFDLVKECCQELCLPDYGGGGVNVTLEVLRD CLCIFCNALTFADVWVMNEYGNKESWTKLFRVHDGFNPLCTSVLYYVYEDDEVVVMSKTGAIVYNYINGTSRSPDTEYST KISEGMVPYRYIESLISPCLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 238 | 231 | 4.8E-44 | – | |
| PANTHER | 8 | 238 | 231 | 4.8E-44 | – | |
| TIGRFAM | 18 | 220 | 203 | 1.9E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0301200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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