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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0301600 |
| Transcript ID | LotjaGi6g1v0301600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-binding protein 39; TAIR: AT5G18940.1 Mo25 family protein; Swiss-Prot: sp|Q29RI6|CAB39_BOVIN Calcium-binding protein 39; TrEMBL-Plants: tr|I3S517|I3S517_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0301600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61898442..61903902) extracted from Lotus japonicus Gifu genome v1.2.
GGTGGCAAATCTAACTCTCTGATTCATCGGGTTCATTATTGCTGATGATGATGATAACTTTCAGATCCTAATCACCATTA CTCATTGAAATCGAAGAAGAAAATTCAAAGAAGAAGAAGCACTTCATCATCAACAGCATTTTCTCTTCATTTTCATCCAA CAATCAACAAGGTTAGAGAGAGAGAGAGGTGATCAATCATCGTCATCATGTCGTTCTCGTTCTTCAAGGTTTCGAGGCCG AAAACGCCGCCGGAGCTGGCCAAGTCCATCAAAGAAAGCCTCATGGCCCTCGACACCAAAACCGTTGCTGAAGTGAAAGC GCTCGAGAAGGTAAACTGAGATTCACTCGCGTAATTACCACCCCTTTTGATCCAAACTCTCAATGCTTTATCTGGGTCTT TGTTTTTTCAGTTAAACTTTCAGTCTTGAATCGTGGGTGTCTTTTAATTCTCTAAACGGGTCCTGCAAATTGGTCAAAAT ATTATCTTGTACCCGAAAGCTAATGTTTGTTATGTAAGTAGTTGTTGTACTTTACTTTCAAAATACAACTTGGAAGTTAT GAGCTTTCTGCAGTAGGTTACATGTTTCCCAAATGGAGGAAGTTGCTCTGATTTTAACTCATGAAAGCTTTCAAATTATT GGCTGTTTGTTCATTCAAATGAGTTATGGTGTTAGAAGGACTTTCATTTTTGTGATACAAATAATAGAAAACTGTTTAGA GGGTAAAAAATGGTAGAGCATTCAGCTTGCGAGATCAAGGATTTATTGCTACATTTATTGGGGATGATGTCTAGTAATAG CACGAACGATGGTTGCAGAATATGAACTTGCAGATTTAACACACTTTTATTGGACAAAACAATCAAGAAGATTGTACATC CTAGAAGTAGAAACCGGGTTTCTTGTGAAACAACTCTTTTGTATGCCAGGTTAATCACCTAAGGAGATTATGTCAGAGAA GTCATTCCGTCACTGTTTCTTTGCTTGGTTCTGATTGTCACCATTTTGTTGTAGATATTTATGTGGACAAGAAGCAAAAT AATATCTATACAGATATTAAGCCTTTGTTTCACTTTATTGTAGGCTTTGGAGGAAGTTGAAAAGAATTTTGTAACAATGA GAACAATGCTTTCTGGAGATGGAGAGTCAGAACCAAATCTGGACCAGGTTTCACAGCTAGTGGAGGAAATCTGCAAGGAG GATGTTCTTACTCTTGTAATTCACAAGCTGCCTGCACTTGAATGGCAAGTAAGATTCTGATTGATACCAATCATTACCAT GTGCAGTTGACTTATTGGTTACTCACTGTTTGAGTGTGAATTTTGATACAGGCTAGAAAGGATTTAGTCCACTGCTGGTC CATATTATTGAAACATACGGTTGACTCCAAATATTGCTGTGTAGAATACATTGAACAACACATTGAGTTACTGGACTTTC TTGTTGTATGGTAAGTTTTTCACTGCATCACCTTTTCTCTCACCAACTTGGAACTGATTTTTGCTGCCTTCCTCCTCTCC TTTTCCTATGAGGGATCTTTAACTTGATGGTATTCAAGTTGGGTGAATGAAACTAATACTCCATGCCAGATTGAAAACAT GAGAGATTTTGTTTTTTCTTAACTTCAGCATCTTTTGTATCCTTGGAACTTGTCTGGTCTGGGAAAGAGTTGGTGAAGGA CATTTGGATTTTTTTTAGTTTTATGACAGTGGTGAACATACACCGCAATGTTGTCAATGCCATAAATGAGTGACCTTTCC CCTATATTTGGGGTATAATATTCAACCTGCAGTATATTACTATTAATACTAATCTTACAGTATATTGCTATCAATAATTG CCATGGTGATTTTTCCAAAATCAGATATCTAATCTTACAGCAATGTGACACATGTAAAAAAACTATATGTTGTTATATTT TTCAATGTTCTTAAATATGTTAAGTTTAAATAGTTTCTCACTGCGTTTCTGTATCCATTTCCAAGCAGCTATGATAACAA AGATATTGCCTTGAGCTGTGGCTTAATGTTGCGGGATTGCATCAAATTTACGACACTTGCAAAGTAAGTTATTTTGGGTT GTCACCATTTTTTCTTTTTCCTAATTTTGCTGATATTTTCATGTCCATTGTAGACTCATATCGGTCCTGCCAAGAGTTTG ATGTGCATTTTTGTAAAAGGATCTGCTTTTGTACTCATGCATTAGTAGGACTTATTACATTGGATTAAATAATAGAGTAT TTTAGATTTTAAAGAAAGAAAAAGTGCATAATTTTTTTGTATTATAACAATGAATATAGTGCCTATATGTTGGCATATCT GCATTTCTTGGACGAGCTTCTCCTTATAGTAGGCAATACTTGGCATTTTCATCCACCATTTTTAATTCACTGCTTAGGAG GTTATGATCATAAGTTAAACCCATTTGCAAAATTGGGGTTAAGTTCTTGAGGATCATGAAATTCATCTGTTTAAAAAGGC TGGGGGGTTACGGGGGGTTAAAGTATTTCAGATGTAAAAACTAACAGATTATTATCACTATAAATTTGCATGTTGAGGCT GGTGCTTGTCATGCAATCTATCAAGATGGCAACTGGCAAGTCAGTTACGCTTCTCTAACTTTTTTTTTTTTTTACTTTTG GGCATTTTCAGATACATATTGGAATCTGCAAGCTTTGTGCTGTTCTTTAAATTTGTAGAGTTACCTAACTTTGATGTTGC ATCTGACGCATTTTCTACGTTTAAGGTCAGATCTGAATTTTCCCCCTTTAATTCCCATCACCTATCTTACTGGTTGTAGA GTTCTATATGCCACTTAATATATGTCTTGCAGGACCTTCTTACTAAACATGGAGATGTGGTCTCTGAATTTTTGACAGCT CACTATGACGAGGTTTGCTTCCTTTTTGGCATGTTTAACAGATTTGAGCATATCAAGGCAGCACAAAATACTGCTTGAGA AAAATTTATGAATGTCGGTTGAATATTTACCAGGAGATCAAATCTCTTGGGCAATAATTTAAGCATCTGTGTTATTCTTC CTAATGAGATAGTTAAGTGTGCCTACCCTCATCTTTGAACATGCGCGCGGGCATGCTAGAAACTAATTGATTGGGGTGGT TTTATCTCCTATGTATAGTCCAGCTTTTTCTAATAGGACTTCTTGTTCCCAGTTCTTTGATCAATACGAGAAACTTTTGA CATCTTCTAATTATGTCACAAGGAGGCAGTCTTTGAAGGTTTGTTCTAGCAACAATTTTCAATGTTTTTCTTTCTGAACT TCTTTTTGATTTACATGCTAATGAACAATTGAATTTATATGGATTCTAGCTTCTCTCGGAATTTCTTCTGGAATCTCCCA ACTCTAAGATAATGAAGCAGTACATCTTAGAAGTTCGTTTTCTGAAAGTCATCATGACATTATTGAGGGTATGACTCCTC TTAATCTTGTTAATTGTGTAATATTTGTTTTCCCCCGCGTTTAGATGATTTCATAATTAATCATCTGGTCAGTTTAGTTT CATGTAACGTTATTAGTGTGAAATTTGTGATATATGTCACAGCCACTCGAGGGCATAAACATGGTGCTTATGGATGCTCT TTGGTTGTGAATATTTGGCAATGAGGTGCCAATCAAAGCAAAAATTAAGTGCAATAGAGATGAGAATGTACACAGGAGAA AGTTGAAGTATAGCACCTATTTAGGAGAAGATGATAAAAACTTGACAGGGGTTTGGGAAGACAACCAATAAAGACTCCAG TGAGAAAAGGGGAGTAAGTTGAATATAGTTCTGTTAAATGGGGAGATCTAAGAAAACTTGAGGAGAAACAAATGAAACAG ACCTTGCTGTAAATAGTTTTGCTGAAATGCTGGTTTTTTATAGAGCTCGATGACATCAATTGATCCACGTAACTAACTTC ACTATTCTATTCGGATAAAATTCGGTGATTATTGTTGTTGTAGTCTATCTGCTTGGCATGCCAAACACTAATAATAAGCA TCTAAACCCTTGCTATACATGCTTTTTCTAGTTTACACACACAATAAGCATTGCTTTTGTCTTACCTTCTCTTTCTATTA ACTCCATATGTTTAATTGTTATATTTTGGGCTGAGCAGGATTCAAGTAAAAACATTCAGTTATCAGCTTTCCACATTTTC AAGGTGATTTTCCCCTTTCATGCTTTTATATATTGAGCTCATTATTTTTTGGATGCACAAAAAAATTCAACCAGATTATG CCTTCCATTCAAAAGTAATTGGGAGTATTAACCTCATTCTTTGCAAAGTTTAGCATCCTTAAGAGACCTAATCCGCCTTG CCTTATTACATTTGCAGCAATGAATTTAAAATTTTGTTAATAGCAGGTTACATTATGAATTGTTTTAGTGCATAATCTAA TTTACAAAAGAGGCTGCAATGCAGATAGTTTCTGAAGGCTATTGTGCACTTCTTTCAAAATATTAATTGCTTGACAATGA CATTCTATACTTTTTTAATTCAAGGATGTTGATGGTTTTATTTTTTTTAAATATACCCTACAACACAACACTTTGCTTTG GAGATGATTATCTATATTTGTTTAATATTCTCCCACACGTTTATCCAGGTTTTCGTAGCTAATCCGAATAAACCCCGAGA AATCAAAATTATTCTGGGCAAGAACAAGGAGAAGCTGCTAGAGTTGCTTCATAATCTGTCTCCGGGAAAAGGTTATTATA CTTTCAGTAATGGGTTGATTTAAAACTTACAATTAACATGTTGCTCTGAATTTCCATTCTCTATTACTCAAGAATTGAAA TATAGTATCTTGAGTCATTGGTCTTAGCTCTTGTCCACTTGCAGGTTCAGAAGATGAGCAATTTGAGGAGGAGAAGGAGT TTATCATCAAGGAAATTGAAAGAGTATCGATGTACATCCAAAGCTAATTTGATGCTAGAGTTTCTTGTTTGCTGTTTGTG AGAAACAAATGTGTTGGAAGGTCCATGAGACTATGAAAAATATGTGTCTGTAATTTAAATAGAATTCAATGTATCAACGA AGAATGTTGCACTGGACTGATCCAGCTACAAACTTAATTTTTTCAGTTTCTATGAAAAAAACAACATTGATCTGAAAAAC TGAAACAACTTATATAAAACATGTATGTTTTTATCCCAGCAGATGAGCATTGAGCAGAACATGTTAATGGAACCTACTTG TAGCAGAACAAATGTAATCAGAAGAAATTTTCTTTTTGGGGTCCAAATCAAAAGAAGGTTAAATTACGGAATTTGTCAGA AACAAAATTGCCATATGAGGAATTCTTTAATTGTTTTGGTGCTTCAGAATCAGAACAAAAAGAAAACAATAGAAAGAAAC AAACTAGCACCAATTCTATGAAGAAAAAATCAGTCTTTGAAACTTTGTATCGAGAACAAGTATTTTAACTATTTTTCATA CAAATATTTAATTGCAAATCT
CDS sequence (LotjaGi6g1v0301600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTTCTCGTTCTTCAAGGTTTCGAGGCCGAAAACGCCGCCGGAGCTGGCCAAGTCCATCAAAGAAAGCCTCATGGC CCTCGACACCAAAACCGTTGCTGAAGTGAAAGCGCTCGAGAAGGCTTTGGAGGAAGTTGAAAAGAATTTTGTAACAATGA GAACAATGCTTTCTGGAGATGGAGAGTCAGAACCAAATCTGGACCAGGTTTCACAGCTAGTGGAGGAAATCTGCAAGGAG GATGTTCTTACTCTTGTAATTCACAAGCTGCCTGCACTTGAATGGCAAGCTAGAAAGGATTTAGTCCACTGCTGGTCCAT ATTATTGAAACATACGGTTGACTCCAAATATTGCTGTGTAGAATACATTGAACAACACATTGAGTTACTGGACTTTCTTG TTGTATGCTATGATAACAAAGATATTGCCTTGAGCTGTGGCTTAATGTTGCGGGATTGCATCAAATTTACGACACTTGCA AAATACATATTGGAATCTGCAAGCTTTGTGCTGTTCTTTAAATTTGTAGAGTTACCTAACTTTGATGTTGCATCTGACGC ATTTTCTACGTTTAAGGACCTTCTTACTAAACATGGAGATGTGGTCTCTGAATTTTTGACAGCTCACTATGACGAGTTCT TTGATCAATACGAGAAACTTTTGACATCTTCTAATTATGTCACAAGGAGGCAGTCTTTGAAGCTTCTCTCGGAATTTCTT CTGGAATCTCCCAACTCTAAGATAATGAAGCAGTACATCTTAGAAGTTCGTTTTCTGAAAGTCATCATGACATTATTGAG GGATTCAAGTAAAAACATTCAGTTATCAGCTTTCCACATTTTCAAGGTTTTCGTAGCTAATCCGAATAAACCCCGAGAAA TCAAAATTATTCTGGGCAAGAACAAGGAGAAGCTGCTAGAGTTGCTTCATAATCTGTCTCCGGGAAAAGGTTCAGAAGAT GAGCAATTTGAGGAGGAGAAGGAGTTTATCATCAAGGAAATTGAAAGAGTATCGATGTACATCCAAAGCTAA
Protein sequence (LotjaGi6g1v0301600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFSFFKVSRPKTPPELAKSIKESLMALDTKTVAEVKALEKALEEVEKNFVTMRTMLSGDGESEPNLDQVSQLVEEICKE DVLTLVIHKLPALEWQARKDLVHCWSILLKHTVDSKYCCVEYIEQHIELLDFLVVCYDNKDIALSCGLMLRDCIKFTTLA KYILESASFVLFFKFVELPNFDVASDAFSTFKDLLTKHGDVVSEFLTAHYDEFFDQYEKLLTSSNYVTRRQSLKLLSEFL LESPNSKIMKQYILEVRFLKVIMTLLRDSSKNIQLSAFHIFKVFVANPNKPREIKIILGKNKEKLLELLHNLSPGKGSED EQFEEEKEFIIKEIERVSMYIQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 337 | 337 | 7.6E-158 | – | |
| PANTHER | 1 | 337 | 337 | 7.6E-158 | ||
| Gene3D | 2 | 337 | 336 | 1.6E-131 | ||
| Pfam | 6 | 336 | 331 | 2.5E-116 | ||
| SUPERFAMILY | 12 | 336 | 325 | 2.02E-111 | ||
| Coils | 29 | 56 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0301600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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