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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0302100 |
| Transcript ID | LotjaGi6g1v0302100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR-repeat protein; TAIR: AT4G15475.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4; TrEMBL-Plants: tr|G7IFP9|G7IFP9_MEDTR F-box/LRR protein; Found in the gene: LotjaGi6g1v0302100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61939641..61945134) extracted from Lotus japonicus Gifu genome v1.2.
ATGCGAGGTCACGATTTGATCAACACTTGTCTCCCCGACGAGTTAATCGTCGAGATCTTCCACCATATCGAGTCCAAATC CACCCGCGACGCCTGCTCCCTCGTCTGCAGACGGTGGCGCCGCCTTGAGCGTCTCTCTCGATCATTCATCCGCATCGGCG CCACCGATTCCCCTGACCTCTTCGTCCACCTCATCTCTTCCCGCTTCTCCAATGTCACCACCGTTCACATCGACGAGCGC ATCTCCGTTCCGCTTCCCCTTAGTGAACTCGTAAGTTTCTGAATCATCATACCCAATTCTCCATTCACGTTTAATTCTGC AAATTGATTGAAAGTTTTGAATGTTTGATTGGTTTGTTTGGTCGATTTTTGTTTTTTTGAGCAGGTGAAAAAACCCGATA AGGGAGCGTCTTCTTCTTCGGCGCTGAAGCTGCATTACATGAAGGAGAATAATGGGTCTACTTCTGCTGAGGGAGATTTC GATTCGCTATGCTTGTCTGATGCTGGATTGTCTGCTCTCGCGAATGGGTATCCTAAGCTCCAGAAGCTGAAGTTGATTTG GTGTTCTAATGTCACTAGCAAGGGATTGACATCGCTTGCTCGCAAATGCGTGTCTCTGAAAGCCTTGGACTTGCAGGTTT TCTTTTAATTGATTTTGTTTTCAGCTGATTCGAATTCGATTTGGGATTGCTATCATTTTGCATTGTTATGTCCATGTATT TTGATGGAACTGTGTTGTGCTTCTTTGCAATATTTCATTTGATTCCTGACTTGTTGAGAAGGATAAGTATTTCAACTTAT GTAGAATATACTTATAGTCATTGTAAGATCATTTCAAAATTCAATTTCCTGTAAGTGCTTGTGGAATAGTTTATCTAAAC TGGCTTTTGATCATTTTGATCAATCACATCAATTGAAAAAAGTTCAAACTTTTCTGATAGAAAAAATGTTTCCTAGTGAT TGGCCAAAGAATTTAGATGCTTTGAGTGATAGTTAAGGTTATGTAATAGAAAAGCTAAAAGGGTACTTAATTTGCAGTTT TCTTTTTGATTGAAGCGTTAGTTTATTATCAATGTCCTTGTCTTCTGAAGCATTGCAATTTAAGACCCCCAACACCATTT TCCCTGCCGCTTTATCAATATCTATGATTCTACTAGCTCAATGGCATAGATGATGCATATTTGTTGTTATAATGACTGAG ATTTTCCTTTAGGGTTGTTATGTGGGAGATCCAGGTATGGCTGCTGTTGGACAGTGCTGCAAAAATCTTGAAGATTTGAA TCTGCGTTTCTGTGAAGGCGTGAGTGATAAGGGTTTGGTTGAGTTAGCCGTAGGTGTGGGAAAATCATTAAAATCTCTTG GTATAGCTGCTTGTGCCAAAGTATCTAACATCACAATGGAAGCTGTTGGATCGCACTGCGGATCCCTTCAGACCTTGTCA TTGGACTCTGAGTTCATCCACAACGAAGGGGTGAATGCTGTGGCTAAAGGATGTCCAAATTTGAAAGCTCTAAAGCTGCA ATGTATTAATCTTACAGATGATGCTTTGGAAGCTGTAGGCGTTAGCTGTTTGTCGTTGGAATTGTTGGCTCTATATAGTT TTCAGAGATTTACTGATAAGTAAGCTGTTTTCTCTCATAATTGCTTTTTCAGAACTTTACTTCATTTGATTATGGTTGAA TTCACAATGTCACAATGCTTAACTTTATTTCTCATGATATGTTATGGGATGTAGTGGACTTAGTGCAGGTTGCAAATTCT TTTCTGGTGTTGTCACTTGAATCAACCATTTGTAGGGTTGATCAATTTAAAGGGACTGTTCTAACAAAAAAAAAATCGTG GTTATTTTTTAATTGCTAAGTCAATCTAGAATGGGATAAGACTTGATTGATTTAATATATATATTTCTTTTTATTTTCCT TTTGCATGACCTTTAAGGGAATTTAAAATACAATCTTTTGACTGTACCTGAGGGTACAATCTTATTATATGTCTCTTTTT CTAAATTCGCATTCTGCTAAGAATTCTTCCATTTTTTTCAGTTTTAGTCTTCCATTCTGTTCTAATATTTTTTCTTTTAA TGATGTCTTCCGTTCAGGGGTTTGTGTGCTATCGGGAATGGATGTAAGAAGTTAAAGAATTTGACTTTAAGTGATTGTTT TTTCCTAAGTGACAAGGGTTTGGAAGCAATTGCCACTGGCTGCAAGGAACTTACTCATCTGGAAGTCAATGGATGCCACA ATATTGGAACTTTTGGTCTAGTATCTGTTGGGAAATTTTGCAAGTACGTTTTTCTCTATGCTAAATTGAACCAAAATGTT ATGTATGCCTGGCAACTTTTGGGTGAATCATCATTTGGAATTTGGATCAAGAAGGAAGCAACAGAAGGAGATTTATGTTT GTGCTCTTGGTTTCTCTGCCTCTCATGTGATGATATTTAATTAGTCTTTCGGTGTGCATTTCATTGCATGAACTTTTTGT TGGTTGTGTGTTTGTTAACTAAATATATTTGTATCCACCTGTATTGTTGTTCGTGGATTTTTTAAACTGATAAAGATTCC CAGTGTAAACTGCAAAGACAAAATTCATAGTAGTATGAGTATGAACAGGAAAGTCTTGTTCTATTGATATAGCTGTGTGC CCTGTTGGTGCTGTTAACAGGCCTGCTTTCATGCAAAGAATATAAACATTGGAGACTGCTCCTAATTAACTTTTTTTCTG TGGGCCCTGTTGGTGTAGGAAACAGGCTCACTTTGGAGGAAAAACACGTGCTTTTGGAAATTTGATTGATATTATGTCAA TATTGTTTCTCCAGCAGGCTAACCATCACTGAAAATTTGCTTTGACATGGGGGATTTTATGTATTTTGGACTTGGTTATC AATCTTGTGTGGACTTCACATAGTTCATCTTATCATCCATCTTCTTCTGATCATTCTTGTGCCCAGTACTGATTGGATGT AACTCTTATAGAAATATAAATCTGACACATATAAATGTTGGGGTCTTATATTTGAATATTAGCTCATGATGTTGACATAA TATTTGATGACATAAGTTTCAAAATGTTGAACTTCCATCAATGATGCTAATCTCAGCTTTCTACTGTACAGACATCTCTC TGAGTTAGCATTGCTTTACTGCCAAAAAATTGGCGATGGTGGCCTTCTTAGAGTTGGAAAAGGATGCAAATTCTTGCAAG CTCTTCACTTGGTAGATTGCTCAAGCATTGGAGATGAAGCCATGTGTGCTATAGCTAGGGGCTGCAGGAATTTAAAGAAA CTTCATATCCGTCGCTGTTATGAGGTAATCTGTTCGTGCTTGTTTGGCTTTTTGTGTGAAAACAACATTCTTTTCGTGTA ATATTTCAAAAAAAAAAATTATTCTTCATGGGATGTGGTGATTTCACATTCAGAATTTTTTTTACCTTAACACTATCCAA TCTAAACTCATTCTCACAAACTTACTTTTAGACAATCATTTCCACTTTCCAGTATAAAATTCTGTCATAACTAGTTCTTT CCTAATTCATTTATGTCAAAATTATTCTACAATCCCAACTAGTTATCTCTTTCTGTCCTTGCTCAGTGTCAATCCTATTT TTTAAAAAAAAGGAATTGTTTTTTTAGTTTCTTTCATCCCTTCTATTTGCAGTGCTTTTATCAAGGTTACTTACTAATTG AACTACTACTTGCAGTCTTTTATCTTGGCTTTTAGGCCAACAGATAGAACATTGCTCTGAAGAAGGGATAGAGTATACAA TGTACTATATATGATTCAAATTTCAATGAATTCTAAGCTGAAATTATATGTCCTTATTCTTAAAGATTTTCTGTGGCTTT TAACAAGTTGAATATTTGACACCGTTCTCATATTATCAAGAGAAGATTACAGCCAATTGTTCAAGTTAACTTTGTACTGG TCCTGTGCTGTCCCCTGGCTTTTAAGGCAACATTTTATACCTTGTTGTTATGGCTGTGTATCATAATATGCATTCTGTTG TTTTATTCTTATTATCCATTCTACTTCGCTTCTTTACGCTATGATATGATTAAATTATTCACCTTTCAAAGAGTTGACTT ATGGAAAACTTAGCTGAGAGTATTGTAATACTTGAAAGATTATGTATGCCATTCAAGCAGTAAACAAATTTTGTGTAGTT GACCATTTAGGTTTTATATTAGAGGTTTATAGATTTTTGGCTCTGTCTTTATGTTTCTTGCTTTCTTCCCCGTATTAGAT TGGGAACAAGGGGATCATTGCTGTTGGCGAGCACTGTAGGTCTCTAACTGATCTTAGCATTCGATTCTGTGATAGGTAAA AACCTTATTCCCAGCTTTTTTTTATTCTTCCTCTCCATTGAAATCCTCAGTTACATGTATTCTATTTTCTTAATCTTTAT TTTTATTGTTGTTTTCATTGTTGATGATGATGATTATTTGTGTTAGATCCTTTCTTCTGTAGTTTAGTTTTTAATCAGTC TGCATGCTCTAGATTACTTCTGATGTGTCTACCTTTAATTTCTTTGTTAAATTACTAGGGTTGGAGATGAGGCCCTTATT GCTATAGGTGAGGGCTGTTCCCTCCAATATCTGAATGTGAGTGGTTGCCACAAAGTTGGAGATGCCGGATTGATAGCCAT TGCAAGGGGGTGCCCTCAACTCTGTTATTTGGACGTGAGCGTACTGCAGGTGTGTTTTCCTGTCTCTTTTTATACCAAAG TGATTAATTTCTTTAATTATAGCCCTTTATCATTTGCATTGTACTTCTCATACTTTTTCAGGAATTTCTTGTGCTTTCCT GATTGAGTTTTAGTTTCTACTAAAATATTATTATCAAACATGCCCATGGCCAGCCCAGGACTGCACACACACACACACAC ATAGATAGATAGAAACACATATAGGAGACATGATATCAAACCTTTCCTTTAACATTAGCATGTATGTCTTCTTAACTGAG GCAGATTATTTCAGTGATGTCATAGAAAGTAATTACCTAAATGCCTCTTATCTAATTTTCATGTACTATATTTATGAATC AAATAAAGTTTTTGTGCTTATAGAAGTTCTTAAACAAGAATCTCTGAACCGGACAACTTATAAGCTATACCCCAATGAAG TCTCAGTAGTCAGTAGTCACTACTTGCTTGTTCTTCTTTCATTCTACTTTTCATTGCTTTGCTCAATACAATTGCAGAAT TTGGGTGACATGGCTATGACTGAGTTGGGAGAACACTGTCCATTGATTAGAGAAATAGTCATCTCTCACTGCCGTCAAAT AACAGATGTTGGTTTAGCCCATCTTGTAAAAAGCTGCACCATGCTGGAGTCATGCCACATGGTTTATTGCTCTGGTATAA CTTCAGCTGGAGTGGCCACCGTGGTTTCTAGCTGTCTCAACATAAAAAAGGTTCTTGTTGAGAAGTGGAAGGTTACCCCG AGGACCAAGCGCCGAGCAGGCTCTGTGATTTCCTACTTGTGTGTGGACCTCTAG
CDS sequence (LotjaGi6g1v0302100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACCACCGTTCACATCGACGAGCGCATCTCCGTTCCGCTTCCCCTTAGTGAAAAAACCCGATAAGGGAGGAGATTT CGATTCGCTATGCTTGTCTGATGCTGGATTGTCTGCTCTCGCGAATGGGTATCCTAAGCTCCAGAAGCTGAAGTTGATTT GGTGTTCTAATGTCACTAGCAAGGGATTGACATCGCTTGCTCGCAAATGCGTGTCTCTGAAAGCCTTGGACTTGCAGGGT TGTTATGTGGGAGATCCAGGTATGGCTGCTGTTGGACAGTGCTGCAAAAATCTTGAAGATTTGAATCTGCGTTTCTGTGA AGGCGTGAGTGATAAGGGTTTGGTTGAGTTAGCCGTAGGTGTGGGAAAATCATTAAAATCTCTTGGTATAGCTGCTTGTG CCAAAGTATCTAACATCACAATGGAAGCTGTTGGATCGCACTGCGGATCCCTTCAGACCTTGTCATTGGACTCTGAGTTC ATCCACAACGAAGGGGTGAATGCTGTGGCTAAAGGATGTCCAAATTTGAAAGCTCTAAAGCTGCAATGTATTAATCTTAC AGATGATGCTTTGGAAGCTGTAGGCGTTAGCTGTTTGTCGTTGGAATTGTTGGCTCTATATAGTTTTCAGAGATTTACTG ATAAGGGTTTGTGTGCTATCGGGAATGGATGTAAGAAGTTAAAGAATTTGACTTTAAGTGATTGTTTTTTCCTAAGTGAC AAGGGTTTGGAAGCAATTGCCACTGGCTGCAAGGAACTTACTCATCTGGAAGTCAATGGATGCCACAATATTGGAACTTT TGGTCTAGTATCTGTTGGGAAATTTTGCAAACATCTCTCTGAGTTAGCATTGCTTTACTGCCAAAAAATTGGCGATGGTG GCCTTCTTAGAGTTGGAAAAGGATGCAAATTCTTGCAAGCTCTTCACTTGGTAGATTGCTCAAGCATTGGAGATGAAGCC ATGTGTGCTATAGCTAGGGGCTGCAGGAATTTAAAGAAACTTCATATCCGTCGCTGTTATGAGATTGGGAACAAGGGGAT CATTGCTGTTGGCGAGCACTGTAGGTCTCTAACTGATCTTAGCATTCGATTCTGTGATAGGGTTGGAGATGAGGCCCTTA TTGCTATAGGTGAGGGCTGTTCCCTCCAATATCTGAATGTGAGTGGTTGCCACAAAGTTGGAGATGCCGGATTGATAGCC ATTGCAAGGGGGTGCCCTCAACTCTGTTATTTGGACGTGAGCGTACTGCAGAATTTGGGTGACATGGCTATGACTGAGTT GGGAGAACACTGTCCATTGATTAGAGAAATAGTCATCTCTCACTGCCGTCAAATAACAGATGTTGGTTTAGCCCATCTTG TAAAAAGCTGCACCATGCTGGAGTCATGCCACATGGTTTATTGCTCTGGTATAACTTCAGCTGGAGTGGCCACCGTGGTT TCTAGCTGTCTCAACATAAAAAAGGTTCTTGTTGAGAAGTGGAAGGTTACCCCGAGGACCAAGCGCCGAGCAGGCTCTGT GATTTCCTACTTGTGTGTGGACCTCTAG
Protein sequence (LotjaGi6g1v0302100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPPFTSTSASPFRFPLVKKPDKGGDFDSLCLSDAGLSALANGYPKLQKLKLIWCSNVTSKGLTSLARKCVSLKALDLQG CYVGDPGMAAVGQCCKNLEDLNLRFCEGVSDKGLVELAVGVGKSLKSLGIAACAKVSNITMEAVGSHCGSLQTLSLDSEF IHNEGVNAVAKGCPNLKALKLQCINLTDDALEAVGVSCLSLELLALYSFQRFTDKGLCAIGNGCKKLKNLTLSDCFFLSD KGLEAIATGCKELTHLEVNGCHNIGTFGLVSVGKFCKHLSELALLYCQKIGDGGLLRVGKGCKFLQALHLVDCSSIGDEA MCAIARGCRNLKKLHIRRCYEIGNKGIIAVGEHCRSLTDLSIRFCDRVGDEALIAIGEGCSLQYLNVSGCHKVGDAGLIA IARGCPQLCYLDVSVLQNLGDMAMTELGEHCPLIREIVISHCRQITDVGLAHLVKSCTMLESCHMVYCSGITSAGVATVV SSCLNIKKVLVEKWKVTPRTKRRAGSVISYLCVDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 28 | 124 | 97 | 7.22E-12 | – | |
| Gene3D | 32 | 263 | 232 | 1.3E-57 | ||
| PANTHER | 32 | 157 | 126 | 6.8E-105 | – | |
| PANTHER | 32 | 157 | 126 | 6.8E-105 | – | |
| SMART | 44 | 69 | 26 | 0.032 | ||
| Pfam | 70 | 90 | 21 | 0.17 | ||
| SMART | 70 | 94 | 25 | 9.1 | ||
| SMART | 95 | 120 | 26 | 6.0E-6 | ||
| Pfam | 95 | 118 | 24 | 0.076 | ||
| SMART | 122 | 147 | 26 | 12.0 | ||
| SMART | 148 | 172 | 25 | 14.0 | ||
| PANTHER | 150 | 295 | 146 | 6.8E-105 | – | |
| PANTHER | 150 | 295 | 146 | 6.8E-105 | – | |
| SMART | 173 | 197 | 25 | 3.4 | ||
| SUPERFAMILY | 173 | 488 | 316 | 1.02E-48 | – | |
| PANTHER | 197 | 503 | 307 | 6.8E-105 | – | |
| PANTHER | 197 | 503 | 307 | 6.8E-105 | – | |
| SMART | 198 | 223 | 26 | 0.038 | ||
| SMART | 224 | 249 | 26 | 2.3E-4 | ||
| Pfam | 224 | 247 | 24 | 0.55 | ||
| SMART | 250 | 275 | 26 | 0.85 | ||
| Gene3D | 264 | 416 | 153 | 1.4E-38 | ||
| SMART | 276 | 301 | 26 | 0.076 | ||
| SMART | 302 | 327 | 26 | 2.3E-4 | ||
| SMART | 328 | 353 | 26 | 0.0087 | ||
| Pfam | 328 | 350 | 23 | 1.0 | ||
| Pfam | 353 | 376 | 24 | 0.016 | ||
| SMART | 354 | 379 | 26 | 0.0011 | ||
| Pfam | 380 | 402 | 23 | 8.6E-4 | ||
| SMART | 380 | 404 | 25 | 0.022 | ||
| SMART | 405 | 430 | 26 | 18.0 | ||
| Gene3D | 417 | 512 | 96 | 3.6E-15 | ||
| SMART | 431 | 456 | 26 | 5.6E-6 | ||
| SMART | 457 | 482 | 26 | 4.1 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0302100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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