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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0302500 |
Transcript ID | LotjaGi6g1v0302500.1 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Phosphatase 2C family protein; TAIR: AT3G06270.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q7XJ53|P2C35_ARATH Probable protein phosphatase 2C 35; TrEMBL-Plants: tr|A0A0B2S068|A0A0B2S068_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0302500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61980216..61984466) extracted from Lotus japonicus Gifu genome v1.2.
CTAAATTGAATTGAATTGAATTCAAATTAGAACAACACACTTTTACTATCTAGTATCTATCACTCAGAAACCAGAATTGA TAGGATCCTAAATCCTAATCCTGCACTCATAGAATAGAATCTCAAATGCTGTTCCAACAGTAACCTTTGTCTGTGTCTGT GTCCTTGTCTGTGTCTTTGTCTTTGTCTTTGTCCCGTGTCACTGTCATTCTCAACCCTTCTTCTCTGAATTTTCATTTCA TTTCGACTCTTGCTTGCAACCTGGGTTTTCCTTCGATTCGCGAAAAGTACCATTCGATAGCTTGCCCCACTTCACACGTT CTGAATGTGAACCAACCCTCTTTGTCTTTCATCAATGTCTCTCCTTTTTGCTTCTTAGTGGGGTTGCTTTCTCTTCTAGG GTTCTGGTTTTCTCACCCTTTTCTGTAATCAATCATTCTCTTTTTTTGTTCACATTCAGAGAGAAATAAAACTGACCCAT TTGTTTTTGTCATGCTCTGATCATACTTCCCAGCTCAAAATCCTTACTTTCATCTTCTCCACTGACTTTGCCTCTAGGGT TTATCCATGTCTTTAAATCCCCCTTTCCAAAATGGATACATGATCAAGCTTGGAGCTAGAATGCAGTGTTTCAGAAGCTT CTAAGAGATAGTTTCCACCCAAAATTGCATTATTGAGGTTTAATTCAGTTCAATTTCTGCTTTGCTTTTAGACCTTGTTG TCAGCTCAAACATGGGTTGTGTCCATGGCAAGTGCTGTAGCCGCTACCCTTCAACTTCAGTTGGTGGCTCCCGGGACCAC CGAGAACTTGGCCCTTATTGTGCACAAAGGAAGCACAATCTCACTCAAAGGTCACTGCAATCTGTTCCTGTCCCTTCCCA CAATTTCAATTTGGAATACTCTGTGCTCACTCAAAGGGGTTACTACCCTGACTCACCTGATAAAGAAAACCAGGATTGTT TCTGTATTAAGACACAGTTTCAAGGTAACCCGAGTGTCCATTTCTTTGGTGTCTATGATGGTCATGGTGAATTTGGTAGT CTGTGTTCAAATTTTGTAAAGGATAGGTTGGTGGAAAATTTGTCCAATGATCCTGCATTGTTGGAGGACCCTGTTAAGGC GTATACATTATCCTTCTTGGCAACAAATGATGACTTGCATAAGAATGAGATTGATGATTCTTTGAGTGGTACCACGGCGA TTACGGTGCTTGTAATTGGGGACACACTTTATGTTGCTAATGTTGGTGATTCCAGAGCTGTGCTGGCAGTTAAGGATGGG AATCAAATTGTCGCCGAGGACTTGTCCTCTGATCAGACACCATTTCGAAGAGATGAATATGAGAGGGTGAAGCTTTGTGG GGCAAGGGTGTTGAGTGTTGATCAGGTGGAAGGGAATAAGGATCCGGGTATTCAGAATTGGGGCGATGAAGAGAGTCAGG GTGATGATCCTCCGAGATTGTGGGTTCAGAATGAGATGGTTCCGGGAGCAGCTTTTACAAGGAGTGTAGGTGATAGTTTG GCTGAGACTATTGGTGTCATTGCTGTTCCTGAGGTGTCAACGGTTCAGCTAACACCTAATCATCTTTTCTTTGTTGTTGC AAGTGATGGCGTATTTGAGTTCCTTTCAAGCCAAATTGTTGTTGATATGGTATGGCATGCAACCTTTCTCTTTGTTAATC TCTAAACTTACCATTTATTCGGATAATGTCTTTGCTTGTTGAATTGAGTTGTATTTATATTGGCTATAATGCTCGTAAGA CCTACTATCTACTTCTTTTGATGGAAGCGTATGTTACCTGTTAATGACTTGCATGTTACATTAAAAGCTTAGACAAGGCA ATCTGGATGCAAATTATGTGTTTTTTCCATGTAATTTTTTTATTGGCTGCCTTCCTATCTACCATGGTTATTGCACATAA TGTTCATATCTGCCATGGTTGTTGCACATAATGTTCATATCTCTGCAAATTCTGTCTTATAACAAATCAAATCATGTTAA TATTATCTGTCAAGTATTAACTAGTGTAGTTGACTAGGTGACATAGTTATCTTGTTGATCAATTTTACTTTGCATGTCAT GCTTCAATTATTCAATTTTATAACAACAGTCTGTTTAAGTTTAATGCCATATTGTACTCATCACTTATGAGAGAAGGAGA TATCAGTTAATGTAATTGCGTGACCTTAGTGTAATTTTGTTTTAAAGATGAGTTGCTGTTATGATGTTTCTTTTTTAAGG AAAATTTGTGTACCATATGTATTAACTGCCATATTTTATGTAAACTTGATCTGTGAGTAGTTCACAAGACTAAATGGTAG TTGCGAATAATTCTTTTACATACTACATGTTTGCTCAATCTGTGTCAATTGGTTGTTACTTGTTAGTGAGAGAAACATTA ATTTTCTGCTGCTTGCTCCCGATGACCTTTGATCTGTTGCATTAGTGTGCACAAATATGTAGTGTTTACTTCACTGTTTA ACATATATTCACAAATCATTATGAACTGTTGTGTAATAATTACCTTTCACTAGTTACCGATTTTAATTTGTAGCACTAGG GTTGCTACTAAATCTGATCGGCTGAACTTGGCTTATTGTGATCTTTATTTAATTTTTTTTGTAAAATCTTATCTATGTTA TGATTCAATCTCTTATCTTTGATGTAGGCTGCAAGTTATTCAGATCCCCGTGATGCATGTGCGGCCATTGCTGGAGAGTC ATATAAACTTTGGCTGGAACATGAGGGCCGAACAGATGATATAACAATTATCATTGTTCAGATTAAAGGCCTGTCTCATG TATGTATTACTTCAATATTCCTTTGGCCTTGGTGGTTTTTAACACGCTTTCTTTATTTAGGCTTGTGTAGATATTTTAAA TTATAATTCACATAGTATTCTTATCCCCCTCACCGAAAAACAAGATTTCAGTTGTGGAAAGAAATGACCTATCCTGTGCA CATACTTCTTTGAGAGTTATCTCATGCTAATCCTATTTGGATGGCAGTTTATTGAAAGTTTTTAATGAATTTATATATCT GGATCTGGGGTTAAGGTTTTTAAAGACTGATGATTAGTGAAGTTTTGTCTAGTCAGCTTTGGCTAATCATGACTGCCATA AATGGTAATGCATACTTACTAGCCTGAAGAAGCTACAACTACTGAAAAAATAGTATACAAATCAATATTTTACCCTTTTG CATCTCAAGTACATTTTCCCTTAAAGAGTTAAAGTTTAGTATGCAGGTCTGAAAACGCCATTGACGATTCGATAATTTAT TTCTATCCCATCATTTAACTTGTATATCTAATCTTTGTTTTTTTTTGTAGTCGGGTAAATCTGGATTCGGATCAGGTGAG ATAAATGTCAGCACTGTAACAAGGGCCAAGAAAGGAAAGGGAACTTCTGAGATATCTACTACCACCGGGTTAGACGTTTA TCATTCTGTGAGGGCTGGTTTCTCTGATTCACAGTCATGTCAGCATACGATCTCAACGAGAAGTCCAGCCTTAGTAGTTC CCTCTCCAGCATGTCAAAAACCGATTGACTTGGTACATTTTTACTAGAATTGTTTCATAACAATCATTTTTCATCAGAAC TTGTGTAATAACCTTTTTTCCCTCTTCTCAATTTTCAGTGACAGGAGAGAGGCTTCATGGGAGCTATACCAGAATGTAGA AAGCATAAATGATCTATGATCATTTTTCATCTGTTCTCAATCTTTAGATATTTCAAGTTAGATGTTGTTTAACCATACAA AGCACTTGAGGGGTACACTAAACTTGTCATCAACTCTTCAGGGGATTTATAAAGAAATAAAGGAGAGTTGTGGAGGGAGA TTGGGTGGTGACTAACTTCCATTTGCATGTGGTCAATGGTCAACTCTGAAGACAAGCCATATGCTACTTAGAAATTAGAA TGTAATTTCCATGAGCCTTATTCTCATGCTGATGCTGGATCCATTGTATCTTTCAGAGACATGTCTGGATTTGTTTTATT GCATTTCAAGAATAGTTTCATCTCATAAATAGTTGCCAAGCATCTTTTATATTTAGCAAGTAAGGCAAAAACATTCAAAT GATAACGTGACATGACTTGTGTTGGTAATTTTCATTCCTTTTTTATAAATTACCTTCCATCCAAAAGTTTTAAATTTCCT TGGCAAACTATTTATCATTTTCTTAATGTATGATGATAACAATGAAAGTTTGAGTTTATGATTTCTATTTCAAATAAATT GACTAAGTTCC
CDS sequence (LotjaGi6g1v0302500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTGTGTCCATGGCAAGTGCTGTAGCCGCTACCCTTCAACTTCAGTTGGTGGCTCCCGGGACCACCGAGAACTTGG CCCTTATTGTGCACAAAGGAAGCACAATCTCACTCAAAGGTCACTGCAATCTGTTCCTGTCCCTTCCCACAATTTCAATT TGGAATACTCTGTGCTCACTCAAAGGGGTTACTACCCTGACTCACCTGATAAAGAAAACCAGGATTGTTTCTGTATTAAG ACACAGTTTCAAGGTAACCCGAGTGTCCATTTCTTTGGTGTCTATGATGGTCATGGTGAATTTGGTAGTCTGTGTTCAAA TTTTGTAAAGGATAGGTTGGTGGAAAATTTGTCCAATGATCCTGCATTGTTGGAGGACCCTGTTAAGGCGTATACATTAT CCTTCTTGGCAACAAATGATGACTTGCATAAGAATGAGATTGATGATTCTTTGAGTGGTACCACGGCGATTACGGTGCTT GTAATTGGGGACACACTTTATGTTGCTAATGTTGGTGATTCCAGAGCTGTGCTGGCAGTTAAGGATGGGAATCAAATTGT CGCCGAGGACTTGTCCTCTGATCAGACACCATTTCGAAGAGATGAATATGAGAGGGTGAAGCTTTGTGGGGCAAGGGTGT TGAGTGTTGATCAGGTGGAAGGGAATAAGGATCCGGGTATTCAGAATTGGGGCGATGAAGAGAGTCAGGGTGATGATCCT CCGAGATTGTGGGTTCAGAATGAGATGGTTCCGGGAGCAGCTTTTACAAGGAGTGTAGGTGATAGTTTGGCTGAGACTAT TGGTGTCATTGCTGTTCCTGAGGTGTCAACGGTTCAGCTAACACCTAATCATCTTTTCTTTGTTGTTGCAAGTGATGGCG TATTTGAGTTCCTTTCAAGCCAAATTGTTGTTGATATGGCTGCAAGTTATTCAGATCCCCGTGATGCATGTGCGGCCATT GCTGGAGAGTCATATAAACTTTGGCTGGAACATGAGGGCCGAACAGATGATATAACAATTATCATTGTTCAGATTAAAGG CCTGTCTCATTCGGGTAAATCTGGATTCGGATCAGGTGAGATAAATGTCAGCACTGTAACAAGGGCCAAGAAAGGAAAGG GAACTTCTGAGATATCTACTACCACCGGGTTAGACGTTTATCATTCTGTGAGGGCTGGTTTCTCTGATTCACAGTCATGT CAGCATACGATCTCAACGAGAAGTCCAGCCTTAGTAGTTCCCTCTCCAGCATGTCAAAAACCGATTGACTTGTGA
Protein sequence (LotjaGi6g1v0302500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCVHGKCCSRYPSTSVGGSRDHRELGPYCAQRKHNLTQRSLQSVPVPSHNFNLEYSVLTQRGYYPDSPDKENQDCFCIK TQFQGNPSVHFFGVYDGHGEFGSLCSNFVKDRLVENLSNDPALLEDPVKAYTLSFLATNDDLHKNEIDDSLSGTTAITVL VIGDTLYVANVGDSRAVLAVKDGNQIVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGNKDPGIQNWGDEESQGDDP PRLWVQNEMVPGAAFTRSVGDSLAETIGVIAVPEVSTVQLTPNHLFFVVASDGVFEFLSSQIVVDMAASYSDPRDACAAI AGESYKLWLEHEGRTDDITIIIVQIKGLSHSGKSGFGSGEINVSTVTRAKKGKGTSEISTTTGLDVYHSVRAGFSDSQSC QHTISTRSPALVVPSPACQKPIDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 40 | 347 | 308 | 3.4E-70 | ||
SUPERFAMILY | 46 | 347 | 302 | 3.27E-54 | ||
SMART | 51 | 343 | 293 | 8.7E-50 | ||
ProSiteProfiles | 55 | 345 | 291 | 43.055 | ||
CDD | 71 | 345 | 275 | 4.5563E-59 | ||
Pfam | 74 | 320 | 247 | 5.8E-37 | ||
PANTHER | 85 | 363 | 279 | 1.0E-132 | – | |
PANTHER | 85 | 363 | 279 | 1.0E-132 | – | |
ProSitePatterns | 91 | 99 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Molecular function | Cation binding | Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. |
Expression pattern of LotjaGi6g1v0302500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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