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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0302500 |
| Transcript ID | LotjaGi6g1v0302500.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatase 2C family protein; TAIR: AT3G06270.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q7XJ53|P2C35_ARATH Probable protein phosphatase 2C 35; TrEMBL-Plants: tr|A0A0B2S068|A0A0B2S068_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0302500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61980947..61983162) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTTGTGTCCATGGCAAGTGCTGTAGCCGCTACCCTTCAACTTCAGTTGGTGGCTCCCGGGACCACCGAGAACTTGG CCCTTATTGTGCACAAAGGAAGCACAATCTCACTCAAAGGTCACTGCAATCTGTTCCTGTCCCTTCCCACAATTTCAATT TGGAATACTCTGTGCTCACTCAAAGGGGTTACTACCCTGACTCACCTGATAAAGAAAACCAGGATTGTTTCTGTATTAAG ACACAGTTTCAAGGTAACCCGAGTGTCCATTTCTTTGGTGTCTATGATGGTCATGGTGAATTTGGTAGTCTGTGTTCAAA TTTTGTAAAGGATAGGTTGGTGGAAAATTTGTCCAATGATCCTGCATTGTTGGAGGACCCTGTTAAGGCGTATACATTAT CCTTCTTGGCAACAAATGATGACTTGCATAAGAATGAGATTGATGATTCTTTGAGTGGTACCACGGCGATTACGGTGCTT GTAATTGGGGACACACTTTATGTTGCTAATGTTGGTGATTCCAGAGCTGTGCTGGCAGTTAAGGATGGGAATCAAATTGT CGCCGAGGACTTGTCCTCTGATCAGACACCATTTCGAAGAGATGAATATGAGAGGGTGAAGCTTTGTGGGGCAAGGGTGT TGAGTGTTGATCAGGTGGAAGGGAATAAGGATCCGGGTATTCAGAATTGGGGCGATGAAGAGAGTCAGGGTGATGATCCT CCGAGATTGTGGGTTCAGAATGAGATGGTTCCGGGAGCAGCTTTTACAAGGAGTGTAGGTGATAGTTTGGCTGAGACTAT TGGTGTCATTGCTGTTCCTGAGGTGTCAACGGTTCAGCTAACACCTAATCATCTTTTCTTTGTTGTTGCAAGTGATGGCG TATTTGAGTTCCTTTCAAGCCAAATTGTTGTTGATATGGTATGGCATGCAACCTTTCTCTTTGTTAATCTCTAAACTTAC CATTTATTCGGATAATGTCTTTGCTTGTTGAATTGAGTTGTATTTATATTGGCTATAATGCTCGTAAGACCTACTATCTA CTTCTTTTGATGGAAGCGTATGTTACCTGTTAATGACTTGCATGTTACATTAAAAGCTTAGACAAGGCAATCTGGATGCA AATTATGTGTTTTTTCCATGTAATTTTTTTATTGGCTGCCTTCCTATCTACCATGGTTATTGCACATAATGTTCATATCT GCCATGGTTGTTGCACATAATGTTCATATCTCTGCAAATTCTGTCTTATAACAAATCAAATCATGTTAATATTATCTGTC AAGTATTAACTAGTGTAGTTGACTAGGTGACATAGTTATCTTGTTGATCAATTTTACTTTGCATGTCATGCTTCAATTAT TCAATTTTATAACAACAGTCTGTTTAAGTTTAATGCCATATTGTACTCATCACTTATGAGAGAAGGAGATATCAGTTAAT GTAATTGCGTGACCTTAGTGTAATTTTGTTTTAAAGATGAGTTGCTGTTATGATGTTTCTTTTTTAAGGAAAATTTGTGT ACCATATGTATTAACTGCCATATTTTATGTAAACTTGATCTGTGAGTAGTTCACAAGACTAAATGGTAGTTGCGAATAAT TCTTTTACATACTACATGTTTGCTCAATCTGTGTCAATTGGTTGTTACTTGTTAGTGAGAGAAACATTAATTTTCTGCTG CTTGCTCCCGATGACCTTTGATCTGTTGCATTAGTGTGCACAAATATGTAGTGTTTACTTCACTGTTTAACATATATTCA CAAATCATTATGAACTGTTGTGTAATAATTACCTTTCACTAGTTACCGATTTTAATTTGTAGCACTAGGGTTGCTACTAA ATCTGATCGGCTGAACTTGGCTTATTGTGATCTTTATTTAATTTTTTTTGTAAAATCTTATCTATGTTATGATTCAATCT CTTATCTTTGATGTAGGCTGCAAGTTATTCAGATCCCCGTGATGCATGTGCGGCCATTGCTGGAGAGTCATATAAACTTT GGCTGGAACATGAGGGCCGAACAGATGATATAACAATTATCATTGTTCAGATTAAAGGCCTGTCTCATGTATGTATTACT TCAATATTCCTTTGGCCTTGGTGGTTTTTAACACGCTTTCTTTATTTAGGCTTGTGTAGATATTTTAAATTATAATTCAC ATAGTATTCTTATCCCCCTCACCGAAAAACAAGATTTCAGTTGTGGAAAGAAATGA
CDS sequence (LotjaGi6g1v0302500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTGTGTCCATGGCAAGTGCTGTAGCCGCTACCCTTCAACTTCAGTTGGTGGCTCCCGGGACCACCGAGAACTTGG CCCTTATTGTGCACAAAGGAAGCACAATCTCACTCAAAGGTCACTGCAATCTGTTCCTGTCCCTTCCCACAATTTCAATT TGGAATACTCTGTGCTCACTCAAAGGGGTTACTACCCTGACTCACCTGATAAAGAAAACCAGGATTGTTTCTGTATTAAG ACACAGTTTCAAGGTAACCCGAGTGTCCATTTCTTTGGTGTCTATGATGGTCATGGTGAATTTGGTAGTCTGTGTTCAAA TTTTGTAAAGGATAGGTTGGTGGAAAATTTGTCCAATGATCCTGCATTGTTGGAGGACCCTGTTAAGGCGTATACATTAT CCTTCTTGGCAACAAATGATGACTTGCATAAGAATGAGATTGATGATTCTTTGAGTGGTACCACGGCGATTACGGTGCTT GTAATTGGGGACACACTTTATGTTGCTAATGTTGGTGATTCCAGAGCTGTGCTGGCAGTTAAGGATGGGAATCAAATTGT CGCCGAGGACTTGTCCTCTGATCAGACACCATTTCGAAGAGATGAATATGAGAGGGTGAAGCTTTGTGGGGCAAGGGTGT TGAGTGTTGATCAGGTGGAAGGGAATAAGGATCCGGGTATTCAGAATTGGGGCGATGAAGAGAGTCAGGGTGATGATCCT CCGAGATTGTGGGTTCAGAATGAGATGGTTCCGGGAGCAGCTTTTACAAGGAGTGTAGGTGATAGTTTGGCTGAGACTAT TGGTGTCATTGCTGTTCCTGAGGTGTCAACGGTTCAGCTAACACCTAATCATCTTTTCTTTGTTGTTGCAAGTGATGGCG TATTTGAGTTCCTTTCAAGCCAAATTGTTGTTGATATGGCTGCAAGTTATTCAGATCCCCGTGATGCATGTGCGGCCATT GCTGGAGAGTCATATAAACTTTGGCTGGAACATGAGGGCCGAACAGATGATATAACAATTATCATTGTTCAGATTAAAGG CCTGTCTCATAAATGA
Protein sequence (LotjaGi6g1v0302500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCVHGKCCSRYPSTSVGGSRDHRELGPYCAQRKHNLTQRSLQSVPVPSHNFNLEYSVLTQRGYYPDSPDKENQDCFCIK TQFQGNPSVHFFGVYDGHGEFGSLCSNFVKDRLVENLSNDPALLEDPVKAYTLSFLATNDDLHKNEIDDSLSGTTAITVL VIGDTLYVANVGDSRAVLAVKDGNQIVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGNKDPGIQNWGDEESQGDDP PRLWVQNEMVPGAAFTRSVGDSLAETIGVIAVPEVSTVQLTPNHLFFVVASDGVFEFLSSQIVVDMAASYSDPRDACAAI AGESYKLWLEHEGRTDDITIIIVQIKGLSHK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 40 | 347 | 308 | 1.8E-70 | ||
| SUPERFAMILY | 45 | 347 | 303 | 1.7E-54 | ||
| SMART | 51 | 343 | 293 | 8.7E-50 | ||
| ProSiteProfiles | 55 | 345 | 291 | 43.055 | ||
| CDD | 71 | 345 | 275 | 4.04136E-59 | ||
| Pfam | 74 | 320 | 247 | 3.3E-37 | ||
| PANTHER | 84 | 347 | 264 | 6.8E-132 | – | |
| PANTHER | 84 | 347 | 264 | 6.8E-132 | – | |
| ProSitePatterns | 91 | 99 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Cation binding | Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. |
Expression pattern of LotjaGi6g1v0302500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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