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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0303100 |
| Transcript ID | LotjaGi6g1v0303100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT1G68170.2 nodulin MtN21 /EamA-like transporter family protein; Swiss-Prot: sp|F4HVM3|WTR10_ARATH WAT1-related protein At1g68170; TrEMBL-Plants: tr|G7IL80|G7IL80_MEDTR WAT1-related protein; Found in the gene: LotjaGi6g1v0303100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62059016..62061457) extracted from Lotus japonicus Gifu genome v1.2.
ATTGTAGTGCCTTATTATGATTCTAGCACTCCACTCAGTTTCTCTATCTCTCATTCACGATCACACAGTCTTCTTAAGTG AAACTTAAGCCCATATTCAGAGTGTGGTGACAGGTGAAACTGACTAAAGATGAAGAACATTGGCAATGTGATGCAGGGTT TGAAGCCAACCTTGCTAATGGTGGCGGTGCAGATAGTATTTGCTGGGGTGAATGTGCTCTACAAGCTCGCTGTAAATGAT GGCATGAACTTGAGAGTGGTTATTGCCTACCGCTTTATATTCGCCACTGCTTTCATAGCTCCACTTGCTCTCATCCTTGA AAGGTTTGTTCCTTCTTCAATTAATAATAATTTCAATTCATGATATAGATTCAACGGATATGCTTTATGTTGTACTCCAT GAATGTTTGCAGGAAGAACAGGAGCAAGATGACATGGATGGTGCTGTTTCAGTCTTTTCTGTGTGGTTTATTTGGGTATG TAGAGTCATGTTTATTGATATGTTCCTTTATTATATATCACTTAATTGATGCTCCTTTCAATTTATTATGAACCAAATTT AGAAGCATCCATACCTGCATTAATTTCTTTCATGTAACCTGATATTCATTTCATTGATTTGATTATGCAGAGGAGCATTA TCTCAAAACTTCTACTTAGAGTCTCTAGCTTTAACTTCGGTAACGTTTGCATCCGCCATGTCCAACCTTACACCAGCCAT AACCTTTATCATGGCTGCTTGCTTCGGGTAAGTAAAGTGCTTTTACTTCATATTCATCAAAGAGTTTAAATTTTAATTAA TTTCTCTATTTTCAACAGATTGGAAAGTTTAAATTTGAATACGGTAGCAGGGAAGGCTAAGATAGTGGGAACAATAATTG GAATTGGAGGGGCAATGGTACTGACTCTGGTTAAAGGCATGGAAATTAAAATTGGTTCCTTCCACCATGTACACCTTTTG CATCACCAAAACGGCGCGCATCCACACGGTACTAGCACCGGTAAGAACCTTTTGGGTGCTCTCTGCGCTCTAGCCGGAAG CATATCTTATGCATTATGGCTTATTATTCAGGTCAGTTTAATTTGCAGGTTCAGCAACTAATTAATCTTTTGTTTAGTTT TAGTCCTTCTATATGCTGCAATGTTTGGTTTAATTAATCTTGAACTAATGTGTCTCAGAAAAAAATGACTCAAAGCTACC AGAATCATTACACAAGCACTGCATTGATGTCATTTTGGGCATCAGTGCTATCCATTGTGTTTGCTCTTTGCATTGAAAGA GATTTGAGCCAGTGGAGGCTGGGTTGGAATATTAGGCTCCTAACTGTTGTTTATGCGGTATGCTGTATATTAATGTGTGA CTTTTAACATTATCATTATAATTGATTACTAAATCTATAAAGATAAATAATCATGTGAATTGACTGGTGTAGGGTACATT GGTTTCTGGACTGGTGGTGGTTGTAATGTCATGGTGTGTCCAAATGAGAGGTCCATTGTTTGTCTCTATTTTCAGTCCTC TGGTTCTTGTGATTTTGGCCTTTGTTTGTTCTCCTTTATTGAACGAGAACCTATACCTTGGAAGGTACGTAAATCAGCTC AGGATTTTCTTGTTATTCTCACAATATAGTGTGCCTGTTTCGTGTAAATAAGGCAACACAGACACCAACGTCGATCACAT TAGATTTTAACATGTTGATTTAAATATGAATTAACATTGACTTCAACAGAAATTCCGTTATTTTTTTATTGCTTTATATC TTAATTGTTCCCCTATACATATCCATATGTCAAATATGGTTTGCTTAAACTATAACTTATTGGTTTTGTTAATTTCAGCA TCATTGGAGCAGTGTTGATTGTATGTGGCTTATATGCGGTTATATGGGGTAAAAGCAAAGAGATGAAGATGACTCCATTG GTGTCTTCAAATGAATCTGATGCAGTTGAAATAGTGTTGAGGTGTAAAGGATCACAATCAGAAGAGAAAAGCAACAACAA TGGTATAGTATAAGTGATTAGGGATTGAATATGTCAAAAGCAACAGGGAATATGCAAATAATGTACACAGCTTAGCAGCT CAAAGTTAGGCATGTATATAGGTGACATATTCACCTGAATTGAGCAAAAGCTAAAACACATGATGGAAGTGACTGAGTGA GTGGGAGGTGATATATACTACCAAATGAAGGAAAGGAAATATTCCCCATAATATGCATTCATAAAATAACATATTTGGTA TGTGATTGAGGATGAGAGGTTCAGTTCTCATCTTAGTTGCTATTTTCACTTTCCCTAGAATTAACTAATATATTCCTTAG TGGTACTTACTATCATGGATTCACATATTTATATCACTCCAACGGGAAGCATGTTATGTGGAAGCTACCAAAAGCTATTA AGTTTCAATATTACTTATGAGTATGACCAAATTTATCATGGA
CDS sequence (LotjaGi6g1v0303100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAACATTGGCAATGTGATGCAGGGTTTGAAGCCAACCTTGCTAATGGTGGCGGTGCAGATAGTATTTGCTGGGGT GAATGTGCTCTACAAGCTCGCTGTAAATGATGGCATGAACTTGAGAGTGGTTATTGCCTACCGCTTTATATTCGCCACTG CTTTCATAGCTCCACTTGCTCTCATCCTTGAAAGGAAGAACAGGAGCAAGATGACATGGATGGTGCTGTTTCAGTCTTTT CTGTGTGGTTTATTTGGAGGAGCATTATCTCAAAACTTCTACTTAGAGTCTCTAGCTTTAACTTCGGTAACGTTTGCATC CGCCATGTCCAACCTTACACCAGCCATAACCTTTATCATGGCTGCTTGCTTCGGATTGGAAAGTTTAAATTTGAATACGG TAGCAGGGAAGGCTAAGATAGTGGGAACAATAATTGGAATTGGAGGGGCAATGGTACTGACTCTGGTTAAAGGCATGGAA ATTAAAATTGGTTCCTTCCACCATGTACACCTTTTGCATCACCAAAACGGCGCGCATCCACACGGTACTAGCACCGGTAA GAACCTTTTGGGTGCTCTCTGCGCTCTAGCCGGAAGCATATCTTATGCATTATGGCTTATTATTCAGAAAAAAATGACTC AAAGCTACCAGAATCATTACACAAGCACTGCATTGATGTCATTTTGGGCATCAGTGCTATCCATTGTGTTTGCTCTTTGC ATTGAAAGAGATTTGAGCCAGTGGAGGCTGGGTTGGAATATTAGGCTCCTAACTGTTGTTTATGCGGGTACATTGGTTTC TGGACTGGTGGTGGTTGTAATGTCATGGTGTGTCCAAATGAGAGGTCCATTGTTTGTCTCTATTTTCAGTCCTCTGGTTC TTGTGATTTTGGCCTTTGTTTGTTCTCCTTTATTGAACGAGAACCTATACCTTGGAAGCATCATTGGAGCAGTGTTGATT GTATGTGGCTTATATGCGGTTATATGGGGTAAAAGCAAAGAGATGAAGATGACTCCATTGGTGTCTTCAAATGAATCTGA TGCAGTTGAAATAGTGTTGAGGTGTAAAGGATCACAATCAGAAGAGAAAAGCAACAACAATGGTATAGTATAA
Protein sequence (LotjaGi6g1v0303100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNIGNVMQGLKPTLLMVAVQIVFAGVNVLYKLAVNDGMNLRVVIAYRFIFATAFIAPLALILERKNRSKMTWMVLFQSF LCGLFGGALSQNFYLESLALTSVTFASAMSNLTPAITFIMAACFGLESLNLNTVAGKAKIVGTIIGIGGAMVLTLVKGME IKIGSFHHVHLLHHQNGAHPHGTSTGKNLLGALCALAGSISYALWLIIQKKMTQSYQNHYTSTALMSFWASVLSIVFALC IERDLSQWRLGWNIRLLTVVYAGTLVSGLVVVVMSWCVQMRGPLFVSIFSPLVLVILAFVCSPLLNENLYLGSIIGAVLI VCGLYAVIWGKSKEMKMTPLVSSNESDAVEIVLRCKGSQSEEKSNNNGIV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 9 | 360 | 352 | 4.4E-181 | – | |
| PANTHER | 9 | 360 | 352 | 4.4E-181 | ||
| Phobius | 12 | 31 | 20 | - | – | |
| Pfam | 13 | 145 | 133 | 7.9E-14 | ||
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 32 | 42 | 11 | - | – | |
| Phobius | 43 | 63 | 21 | - | – | |
| TMHMM | 45 | 63 | 19 | - | – | |
| SUPERFAMILY | 47 | 147 | 101 | 7.45E-10 | – | |
| Phobius | 64 | 74 | 11 | - | – | |
| TMHMM | 75 | 94 | 20 | - | – | |
| Phobius | 75 | 94 | 20 | - | – | |
| Phobius | 95 | 105 | 11 | - | – | |
| TMHMM | 104 | 126 | 23 | - | – | |
| Phobius | 106 | 126 | 21 | - | – | |
| Phobius | 127 | 137 | 11 | - | – | |
| Phobius | 138 | 156 | 19 | - | – | |
| TMHMM | 139 | 161 | 23 | - | – | |
| Phobius | 157 | 188 | 32 | - | – | |
| TMHMM | 189 | 208 | 20 | - | – | |
| Phobius | 189 | 208 | 20 | - | – | |
| Pfam | 190 | 328 | 139 | 6.9E-11 | ||
| Phobius | 209 | 219 | 11 | - | – | |
| TMHMM | 220 | 239 | 20 | - | – | |
| Phobius | 220 | 239 | 20 | - | – | |
| SUPERFAMILY | 232 | 333 | 102 | 1.29E-7 | – | |
| Phobius | 240 | 258 | 19 | - | – | |
| TMHMM | 254 | 276 | 23 | - | – | |
| Phobius | 259 | 277 | 19 | - | – | |
| Phobius | 278 | 283 | 6 | - | – | |
| TMHMM | 283 | 305 | 23 | - | – | |
| Phobius | 284 | 305 | 22 | - | – | |
| Phobius | 306 | 310 | 5 | - | – | |
| TMHMM | 309 | 328 | 20 | - | – | |
| Phobius | 311 | 330 | 20 | - | – | |
| Phobius | 331 | 370 | 40 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0303100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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