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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0306000 |
| Transcript ID | LotjaGi6g1v0306000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-amylase; TAIR: AT5G18670.1 beta-amylase 3; Swiss-Prot: sp|Q8VYW2|BAM9_ARATH Inactive beta-amylase 9; TrEMBL-Plants: tr|A0A151T733|A0A151T733_CAJCA Beta-amylase; Found in the gene: LotjaGi6g1v0306000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62325695..62328889) extracted from Lotus japonicus Gifu genome v1.2.
ATAATGTCTATTTTTTAATAACAAAAACAACATCAATATTCTGCGGCTCAACTCTCAGTTACCTATCAGAACGCCACGTG TCTCATTGTTTTGTTTCTCCTACGTTTACTTGTCGGAAGCAAAAGAAGAAAGAGAAAAAGAAAAGAAAAAGCGCGTCTTG ATTGGATTCCACTTCCTTTATATATGAACCCTTCACCAATCCATTTCCTACATCTTCAAAATCTCATCTTTTACAAATCC AACTTAAATTCTCTTGAAAATCTCAACTGGGTTGTTCTCAAAACGCATAATTTTTCAATTCTTTTGGTGATTATTTGGTG TTTTTTTTTCTCTCTTGATCATGGAGGTTTCGGTTATTGGAAGCTCTCAAGCGAAGTTGGGAAAGTCTGATTTGGTGACT AGGGAACAGGGTTTTTGTTTTGTGAAGGAAAGTTGCAGGATTGAAAATAATAGAGTTAGTTTTGGTGGGAATATGAGGTG GAAGAAGGATGGTTTGCGTTTCAGTTTGAGAGCTGTTCATCATGCTGAACCAGTTCTAGAGAAGAAGAAGAAGAAGAGTC ATTCTGGGTCTGGAACAGGATCATCCAATTCGGTGAGTTTTCTATTTTGGTTTTGTTTTGTGTAGTGTGTGGTTGGTGAA ATTTTTGGTTGAACAAATTTGATACTTTATTTTTAGTTTGACTTGGAAGGAAGCCATTGTTTCTGCTATTTTTCTATATT TGACTTGTTGAAATTTATATCTGTTAGTTTGAAATTTCTCTATTTTTACTTTACTCCTTATTTGGACTATATGTTTCGCC CAAATACACTGATAGCATGTTTGGAATCCTTTTTCAATTAATTATGTAGCCCAAATCAATTTTGGAGAGAAACTTCTGTG AATGTCTTTTGAGTGGCAGAGTTGATTCTGAAGAACAATAAGTTAGATCCAAACATGCTATAAGTTTTGTATAATATCAA GTTTTAAGGCATTACAAAATAACTAACTTGCTTAACATACTATGTCACAGGTAGATGGTGTAAGATTATTTGTAGGGCTG CCTCTAGATGCCGTTTCTTACGACTGCAGTTCATTAAATCATTCTAGAGCAATTGCAGCTGGCCTAAGAGCGTTGAAGCT ATTAGGAGTAGAAGGTGTTGAGCTCCCTGTTTGGTGGGGAATTGTTGAGAAAGAGGCCATGGGAGAATATAATTGGTCAG GCTATCTTGCCATTGCTGAGATGGTTCAGAAAGCGGGTCTCAAGCTCCATATGACCCTTTGCTTTCATGGGTCTGAAAAA CCAAACATTCCCCTACCCAAATGGGTGTCCAAGATTGGTGAATCTCAGTCCAGTATTTTCTTCACAGACCGGTCAGGACA GCGTTATAACGAATATCTGTCGCTAGCGGTTGATAATCTTCCAGTTCTTGATGGGAAGACACCAGTTCAAGTGTACCAAA GTTTCTGTGAGAGCTTCAAGTCTTCATTCTCTGCCTTCATGGGCTCTACAATTACGGTAAGAGTTTTGAATTCCAAGATA TCTTGCTAATAAAATGTTTAGTTCTGTCGTGAAAAGCCTCATAAATGAATCCATAATAGGATATCTGGTACCATCTTATA ATTTGGACTAAAACCTAACTCTGCCCGAAGTGTTAGCTTTTGTGGTAGAGTTAGGCCCAACCTGAATTCTAAGATGGTAT CAGGGTCTACCTTAGATCCGTGTATTGAAGATCACTCATGTAGGGTAGGGATCACCAGTGGATGTTCTTTCGTGCAAAGT TGGGCCTAATCCCAACTCTTACTCCCAAGTTAACTTTCGGGCAGAGTTAGACCTAATCCAAATTCAAAGAAGAAACTACA TAGTGTAACTTTTGTAGTATCATGTTGTGGATTGTGTTACACCACCAATCCAAACACACTATAAGTTATGTACACTAACA TCTGTTTTGGTATTAATCCATGTGATTGACATTGTCTTCATATCTTGCCATTCTGCAGGGCATTTCCATGGGTTTAGGAC CAGAAGGCGAGCTACGGTATCCATCTCACCACCACAGAAATGGTAAAACTCAAGGAGTAGGGGAATTTCAGTGCTATGAC CAAAACATGCTCCAACTTCTCAAGCAACATGCTGAGGCATCTGGAAATCCTTTATGGGGGCTTGGTGGTCCTCATGATGT CCCCACCTATGACCAGCCACCACACTCCAATAACTTCTTCAAGGATGGGGGTTCTTGGGAGTCTCAATATGGAGACTTCT TCCTTTCCTGGTATTCTAATCAGCTTATCACTCATGGTGATTGCCTCCTCTCACTAGCAGCTTCTACTTTCGGTGACACC GGAGTGACAATACATGGAAAAATCCCACTCATGCACACTTGGTATGGAACTCAATCCCATCCTTCCGAGCTAACAGCAGG GTTCTATAACACAGCTAACAGGGAGGGTTATGAACCCGTTGCAAAAATCTTTGCTAAGAACTCTTGCAAGATTATGTTGC CTGGATTGGACCTTTCCGACGCAAACCAGCCGAGTGAAACCCGCTCGAGCCCTGAGTCACTTCTTGCACAAATTATGGCA TCTTGCAGAAATCATGGTGTAAGGGTTTCAGGTCAAAATTCTTCAGTTTTTGGTGCACCAGAGGGTTTTGATCAAATTAA GAAGAATTTATCAGGAGATAATGTGCTGGACTTGTTCACATATCAGAGAATGGGAGCATATTTCTTTTCTCCTGAGCATT TTCCTTCATTCACAGAGTTTGTTCGAAGCCTTAATCAACCGGAACTGCACTCAGATGATCTTCCTACCGTAGAGGAAGAA GGCACTGAATCTGCAGTTAATAGTCAAGAATCAAGCATAAGCATGCAAGCGGCCTAAGTGCATGGTTGGAAATCCCTCTA CAATTGATTCTAAGGCCATAATTAATTTTGGGGAGAAGATTCTTTGAGTAGCTTCTGAGTTTCAGAGTTTGTTCTGAAAA ATGAGAAGGTGATTCAAACATGTTGTAAATTTGTAATGATAATAATCATGTATATAATAATTAGTTGTGTCCTTGTAATT TGTATGGGACGAGATTGTTGTAGGTCATTATGTAAGCATAGCAAGATGAGGATTCCTATTTCTGGTTAAACCTCAAGCAG AGTTGCATTCCAATTATTCCTTATAATGTATCGAAGTTGTTGGGTAGCAGATAACCTTTTTATCATTTGTGCTTT
CDS sequence (LotjaGi6g1v0306000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTTTCGGTTATTGGAAGCTCTCAAGCGAAGTTGGGAAAGTCTGATTTGGTGACTAGGGAACAGGGTTTTTGTTT TGTGAAGGAAAGTTGCAGGATTGAAAATAATAGAGTTAGTTTTGGTGGGAATATGAGGTGGAAGAAGGATGGTTTGCGTT TCAGTTTGAGAGCTGTTCATCATGCTGAACCAGTTCTAGAGAAGAAGAAGAAGAAGAGTCATTCTGGGTCTGGAACAGGA TCATCCAATTCGGTAGATGGTGTAAGATTATTTGTAGGGCTGCCTCTAGATGCCGTTTCTTACGACTGCAGTTCATTAAA TCATTCTAGAGCAATTGCAGCTGGCCTAAGAGCGTTGAAGCTATTAGGAGTAGAAGGTGTTGAGCTCCCTGTTTGGTGGG GAATTGTTGAGAAAGAGGCCATGGGAGAATATAATTGGTCAGGCTATCTTGCCATTGCTGAGATGGTTCAGAAAGCGGGT CTCAAGCTCCATATGACCCTTTGCTTTCATGGGTCTGAAAAACCAAACATTCCCCTACCCAAATGGGTGTCCAAGATTGG TGAATCTCAGTCCAGTATTTTCTTCACAGACCGGTCAGGACAGCGTTATAACGAATATCTGTCGCTAGCGGTTGATAATC TTCCAGTTCTTGATGGGAAGACACCAGTTCAAGTGTACCAAAGTTTCTGTGAGAGCTTCAAGTCTTCATTCTCTGCCTTC ATGGGCTCTACAATTACGGGCATTTCCATGGGTTTAGGACCAGAAGGCGAGCTACGGTATCCATCTCACCACCACAGAAA TGGTAAAACTCAAGGAGTAGGGGAATTTCAGTGCTATGACCAAAACATGCTCCAACTTCTCAAGCAACATGCTGAGGCAT CTGGAAATCCTTTATGGGGGCTTGGTGGTCCTCATGATGTCCCCACCTATGACCAGCCACCACACTCCAATAACTTCTTC AAGGATGGGGGTTCTTGGGAGTCTCAATATGGAGACTTCTTCCTTTCCTGGTATTCTAATCAGCTTATCACTCATGGTGA TTGCCTCCTCTCACTAGCAGCTTCTACTTTCGGTGACACCGGAGTGACAATACATGGAAAAATCCCACTCATGCACACTT GGTATGGAACTCAATCCCATCCTTCCGAGCTAACAGCAGGGTTCTATAACACAGCTAACAGGGAGGGTTATGAACCCGTT GCAAAAATCTTTGCTAAGAACTCTTGCAAGATTATGTTGCCTGGATTGGACCTTTCCGACGCAAACCAGCCGAGTGAAAC CCGCTCGAGCCCTGAGTCACTTCTTGCACAAATTATGGCATCTTGCAGAAATCATGGTGTAAGGGTTTCAGGTCAAAATT CTTCAGTTTTTGGTGCACCAGAGGGTTTTGATCAAATTAAGAAGAATTTATCAGGAGATAATGTGCTGGACTTGTTCACA TATCAGAGAATGGGAGCATATTTCTTTTCTCCTGAGCATTTTCCTTCATTCACAGAGTTTGTTCGAAGCCTTAATCAACC GGAACTGCACTCAGATGATCTTCCTACCGTAGAGGAAGAAGGCACTGAATCTGCAGTTAATAGTCAAGAATCAAGCATAA GCATGCAAGCGGCCTAA
Protein sequence (LotjaGi6g1v0306000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVSVIGSSQAKLGKSDLVTREQGFCFVKESCRIENNRVSFGGNMRWKKDGLRFSLRAVHHAEPVLEKKKKKSHSGSGTG SSNSVDGVRLFVGLPLDAVSYDCSSLNHSRAIAAGLRALKLLGVEGVELPVWWGIVEKEAMGEYNWSGYLAIAEMVQKAG LKLHMTLCFHGSEKPNIPLPKWVSKIGESQSSIFFTDRSGQRYNEYLSLAVDNLPVLDGKTPVQVYQSFCESFKSSFSAF MGSTITGISMGLGPEGELRYPSHHHRNGKTQGVGEFQCYDQNMLQLLKQHAEASGNPLWGLGGPHDVPTYDQPPHSNNFF KDGGSWESQYGDFFLSWYSNQLITHGDCLLSLAASTFGDTGVTIHGKIPLMHTWYGTQSHPSELTAGFYNTANREGYEPV AKIFAKNSCKIMLPGLDLSDANQPSETRSSPESLLAQIMASCRNHGVRVSGQNSSVFGAPEGFDQIKKNLSGDNVLDLFT YQRMGAYFFSPEHFPSFTEFVRSLNQPELHSDDLPTVEEEGTESAVNSQESSISMQAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 538 | 538 | 8.7E-261 | – | |
| PANTHER | 1 | 538 | 538 | 8.7E-261 | ||
| Gene3D | 81 | 537 | 457 | 4.5E-152 | – | |
| SUPERFAMILY | 87 | 519 | 433 | 4.16E-161 | ||
| Pfam | 92 | 492 | 401 | 2.6E-79 | ||
| PRINTS | 123 | 137 | 15 | 6.5E-34 | ||
| PRINTS | 144 | 162 | 19 | 6.5E-34 | ||
| PRINTS | 253 | 275 | 23 | 6.5E-34 | ||
| PRINTS | 326 | 345 | 20 | 6.5E-34 | ||
| PRINTS | 362 | 378 | 17 | 6.5E-34 | ||
| PRINTS | 379 | 390 | 12 | 6.5E-34 | ||
| PRINTS | 397 | 420 | 24 | 6.5E-34 | ||
| PRINTS | 434 | 456 | 23 | 6.5E-34 | ||
| MobiDBLite | 509 | 538 | 30 | - | – | |
| MobiDBLite | 521 | 538 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Polysaccharide catabolic process | The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. | ||
| Molecular function | Beta-amylase activity | Catalysis of the reaction: (1,4-alpha-D-glucosyl)(n+1) + H2O = (1,4-alpha-D-glucosyl)(n-1) + alpha-maltose. This reaction is the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains. |
Expression pattern of LotjaGi6g1v0306000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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