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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0307700 |
| Transcript ID | LotjaGi6g1v0307700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial transcription termination factor family protein; TAIR: AT5G07900.1 Mitochondrial transcription termination factor family protein; Swiss-Prot: sp|Q9FK23|MTEF8_ARATH Transcription termination factor MTERF8, chloroplastic; TrEMBL-Plants: tr|G7IPZ8|G7IPZ8_MEDTR Transcription termination factor family protein; Found in the gene: LotjaGi6g1v0307700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62489853..62495325) extracted from Lotus japonicus Gifu genome v1.2.
GCGCAGCTAAAACCCTCTTGTGCGGTTCTGCCGTTAGGTTACCTTAAACCCTGTCTTCATCTTCATCTTCATCTTCATCT TCCACCATGTTTGGTCTACTCAATCGCAGAGCATTGCTCTGCTCAAACCTCAAAACCACCATCACCAGAACCCCCTCATT TCTTCAACACTTTTCCTCCTCAGAACAACACTCTTTCACCACCAACTACCTCATCAACAACCTCGCCTTCTCCCCTGAAA CCGCTTCCAGTATCTCCACCCGAGTTCGTCTCGACAACTCAGAGAAACCTGACTCAGTCCTCGCCTTGTTCAGAACCCAC GGCTTCACAAACCACCAGTTATCTCAGATCATCCGAACCCGCCCACTGTTCCTCTCCTCCGATCCCAACACCGCCATTCT TCCCAAATTCAACTTCCTTCTCTCGAAGGGTGCTTCAACTTCTGATCTAGTGGAAATCATCACCAAGGATCCCTGGCTCA TGCACTACAGCTTGGAGAATGCCATCACCCCATGTTATGATTTCCTCAAAAGGTACTTGGTTTCTGATGAATCCACCATA GAGGCTATAAAATCATGCACTGGTTTGATTTATTCTAAGCACCCAGAAAAAAATATTCAAACTCTGCTTGAGAATGGTGT CCCTGAATCACAGGTTCCGATTCTGCTGTGTCGTTCGGGTTATTTATTGAAAAGACATGACCCTTCTGACTTTAAGAAGG CAGTGGAGGAAGTAAAAGAAATGGGGTTTGACCCCAACAAGAAGTTTTTCATAGTTGCATTGAATGCTAAGACTATGAAA GTTTCACTGTGGGAGAGGAAGATTGATTTGTATAAGAAATGGGGTTGGTCTGAAGAAATTGTTGTTTCAGTATTTAAGAG ATATCCATGGTGCATGCTGGCATCTGAGAAGAAAATTGAGACTGTCATGGAGTTTTGGGTCAACCAAATGGGTTGGGACT CTCTGGTGCTCGCCAAACACCCGGTGCTTCTTTGGATTAGCTTGGAGAAAATAATTATTCCTAGGGCTTTTCTCTTGCAG TCTCTTCAATCCAGAGGTTTGATTAAGGATGCTAAATCGCCCGCAGCGTTTAAAGTTCCTGAGAAGATGTTCTTGCAGAA ATTTGTGAATTGTTTTGAGGAAGAATCTGCTCAGCTCTTGGAGCTGTATAAAGAGAAAAAAAGGAGCTGTATGAAGAGAC AAAATATCGTCCAAGATGACACAGTTGCAAATGCGACTGCCTAGTCCTATTTTGAGTTTGGAGTTCTGAATAAATAGTCA ATTTAAGTTGGTGATTTGTGTTAGCTTACTGAGTCTATTAATTGATATTACTTCAGCTCAAAGGGAAGTGCTTGTTGCAT TTGAAAACTGGAAGCATATTGGTTGTTCGTTGTTGTGATCAACTGATCATAGATTACTTGTTTGTTAGTCATCTAACTTG TTTTTCCAATTGCTAAATTTGGCACTTCATCACATTTGATTTTTTTTAGGATGGAATCGTTTTGAATGCTGTTTTCTTAC AGTTTTATTGGTTTTCTGTACTCTCTGTCTGTGGTTGCTTAGTTTCCATAAACATGAAAATTGAGTGAAAAGAGGAAAGG GGGGGGGGGGGGGTAATTTGAAGAAAAATTGCATGTTTTGAAGAGTAGATATTCTACTTGTTTTGTGCCTAGTTAATTCA CAAACACACTACTTATAGTGATCTGTTGCACTGCTATTGTTTTAATGAATTGAAAATTTCTGACATTTATACCAACACAT CAATGTGATGAGTGGTAATCTGTTTATGATATCAACAACCCCCTCATTGATGTCAGTAGTGGCGGAGCTTGCACAAAAAT TTTAGGGATCCAAAATTAAATAACATTTCAATACATAAACTGAACTTTGAGCCACTCACGCACGATGCACACACGCGAGT TATAAAAAGTATGCTATTTCAGAAATTAAATGAAGCTGGTTTCTCAGTTTGCTTGGCCTTAGCAATAACACAGCTTGCTG TCAGGTTTTGAAATCTGGATTTTTTATGGAATGCAATAAAGAAGAGGTCTTAAGAGCCAAAGTAATTGCTGAAAAGAAGA TGGAAAGCAAGGATTTCGCAGGTGCTCGAAGAATTGCCCTTAAGGCTCAGCACCTATATCCTGATTTGAAGAATATCACT CAAATGCTTGTTGTTTGTGATGTGCATTGCTCAGCTGAGCAGAAATTGTGTGGTGGCTTGATAGACTGGTATAAAATACT TCAAGTTGAGGCGACAGCCGATGATGCAACAATTAAGAAGCAATACAGGAAACTTGCTCTTCAGCTTCATCCTGACAAGA ACAAGTTTGCTGGTGCAGAAGCTGCATTTAAGCTGATTGGGGAAGCTCAAACAGTGCTTTTGGATAGAGGTAAACGATCT TCGTTCCACAGGAATCAAATGAACAGAAATGCAATGCAGTATCATCAGCGGCAAAAAAAGTCTTGGCCACCATCTCAGCA AACCAGTGACCGGCCCAATTTCACAAACTTGAATCCTCCTCCACAGCAACAACCATCTAGGCCACCGTCTCAGCAGGGGG TTAATGGCGGCCGACCGACTTTTGGTACCGTTTGCTGCTTCTGTTTGCATAGAAATCAGTATTCCAGGGAAGTTTCAATA AACCTCTTCACTGTCAACTTTGCAATAAGCCCTTCATGGCATTTGAGGTGAATTTGAAAAGTACAACTCCAGTAACTAAT TCAAGTCAGCAAGCTTTTATCAGAAAAAAGCCCCTACTTCAAATTTGCAAAATTTATTTTACATCAAGAGTTTTATTTAT TATTTAATTTTGTTTGTTCAGTATGTGTTTTCTTACCAAGGGAAGTGCTTGTTGCATTTGAAAACTGGAACCATATGGGT TGTTCGTTGTTGTGAATTGTTATCATCTGATCATAACAATTAATTTTGCTTGTTAAGCTGTTAGTCATCTAACTTGTTTT TCCAATTGCTAAATTTGGCACTTTATCACAATTGTTTTATTTTGTCTAGAGAGTAGAGGCTGCATGTTATTCTGCAACAT TAGGTGAAGTTATATGGTAAAATTTGAGGTCTCCTAAGAGCTCCTAAAACAGGACACTTTAGTTCCGTGTTACATAGTCA AAAATACCCCAAATTTTTATTTGAAGTCTTTTATATACAAAGAGTTTAAAATCACTTTTTAAAGTGAAAATCACGTTTAA TATTTGTTGAAAAACTTAAAATAAATTTTCATTTTTCAAAAAAAATTACGTAAAAAATAAAATCGATTATTTTTTAAAAG TACAATCACTTTTTTTAAGCAATAGCAAAAGAGCTAATTTGAGTACGTTTGTTTCAGCTTATTTTTAGAAAAAAAAAATA CTTTTTCATTTTTACGTTTGTTTCAACTTTTCAATAAATCATTATTTTACAAAAAGTTGAAAGCAGATTATTTGGAAAAA CTACTTTAGAGTGCATTCGTTTCACTTTTTTTAGAAAAAATCATTTTTTTTTTCATTTTTATGTTTGTTTCAGCTTTTCA ATAAATCAATTTTTTACAAAAAGCTGAAAGTATAAAGTAGATTATTTGGAAAAACTACTTTAGAGTGCGTTTGTTTCAGC TTTTCAATAAATCATTATTTTACAAAAAGCTGAAAGTATATTATTTGGAGAAGCTACTTTAGACTGCGTTTGTTTCAGCT TATTTTTAGGAAAATCACTTTTTCTCATTTTTATGTTTGTTTCAGCTTATTTTTAGGAAAATCGTTTTTTTCAATTAAAA TTCATATTTATGGAGCCAAACATAAATGAACTTATGTTTTTCCCAAAATCTCTAAAATTAATCTTTTATCCAGGAGCTTA AAATTTCTAATTCTCTATTCACAAACCCTTTGTTCATCTTCCTCTTCCACCATGTTTGGTGTTTTCCATCGCAGAGCAAT GCTCTGCTCCAACCTCAACATCACCATCATCAGAACTCCCTCATTTCTTCAACACTTTTCCACTTCTGAACAACACTCTT TCACCACCAACTACCTCATCAACAACTTCTCCTTCTCCCCTGAAACCGCTTCCAACCTCTCCACCCGAGTTCGTCTCGAC AACTCAGACAGACCCGACTCTGTCCTCGCCTTGTTCAGAACCCATGGCTTCTCAAACCCTCAGTTATCTCAGATCATCCA AAGCTACCCAAAGCTTCTTTCCTCCGACCCCATCAAATCCATTCTTCCAAAGTTCAACTTCCTTCTCTCAAAGGGTGCTT CAACTTCCGACCTTGTGCAGATTGTGACCAAGAATCCCAGTGTCTTGAAGCAGAGCTTAGCAAATACCATCACCCCATGT TATGATTTCCTCAAAAGATTCTTGGTTTCTGATGAGTCCACTATATACTCTATAAAATACTGTCCTTGCTTGATTTATTC TAAGCTTCCATCCATTAATGTTCAAATGCTGCTTGAGAATGGTGTCCCTGAATCAAAAGTTGCTCTTATACTTCGTCGTT GGGGTCATATCGTCAGTGAGCATCATCCTATCATTAAGAAGGCAGTGGAAGAAGTAAAGAGATTAGGATTCAACCCCGCC TCGACATTTTTCATTGTAGCAGTGATTGCTAAGATGATGAACGATTCCCTGTGGCAAAGGAAGACTGATTTGTATAAGAA ATGGGGCTGGTCTGAAGAAGTTATTGTTTCAGCATTTGTGAGACATCCATGGTGCATGCAGGCATCTGAGAAGAAAATTG AGTCTGTGATGGAGTTTTGGGTCAACCACATGGGTTGGGACTCTCTGGTGCTTGCCAAGCAACCGATACTTCTTACGTTG AGCTTGGAGAAAAGAGTTATTCCCAGGGCTTTTGTCTTGCAATTTCTTCAAAGTAGAGGTTTGATTAAGGATGCTAAATC GCCTACAGCGTTTAAACTTACTGATGATATGTTCTTGCAGAAATTTGTGAATTGTTTTGAGGATGAAGCTTCTCAGCTGT TGAAGCTGTATGAAGAGAAAAAAAATCAACCAAGATAAGATAGATGCAAATGCGTCTGTCCTATTTTGGGTTTGAAGATC TGAATAAATAGTAAATTTAAATTTGTGACTTCACTGACTTGTATTAGCTTATCTAGTTCTATTAGTTGATTCTATAGGAT TGATTCATAGCCTGAATGGAAACTTGTTGCATTTGACAATTGGAACCATATGGGTTGCTGTGATCATCAATACTTGTTTG TTAGCCATCTATCATGCTTTGCTGATAGGCCTATTTGGTGCTTTATCACCTTTGTGTTATTTTGTCAAGAGGCTTCCTGA CATACATGTTGTAGCACAATTTCTCTGCATCATTAGGTCAAGTTATATAGTTCGGTTCGGTTTAAGGTCTCAATTCATAT TTTATCTGTTGTTTTCAGCTATTAACTTATCATTGCTGTATTGTTTGAGGTTCAAGTCTTTGGTAATCTAATTTGAACTT AACAAATTATGTTGCTTGATCATATAAGATGGC
CDS sequence (LotjaGi6g1v0307700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGGTCTACTCAATCGCAGAGCATTGCTCTGCTCAAACCTCAAAACCACCATCACCAGAACCCCCTCATTTCTTCA ACACTTTTCCTCCTCAGAACAACACTCTTTCACCACCAACTACCTCATCAACAACCTCGCCTTCTCCCCTGAAACCGCTT CCAGTATCTCCACCCGAGTTCGTCTCGACAACTCAGAGAAACCTGACTCAGTCCTCGCCTTGTTCAGAACCCACGGCTTC ACAAACCACCAGTTATCTCAGATCATCCGAACCCGCCCACTGTTCCTCTCCTCCGATCCCAACACCGCCATTCTTCCCAA ATTCAACTTCCTTCTCTCGAAGGGTGCTTCAACTTCTGATCTAGTGGAAATCATCACCAAGGATCCCTGGCTCATGCACT ACAGCTTGGAGAATGCCATCACCCCATGTTATGATTTCCTCAAAAGATTCTTGGTTTCTGATGAGTCCACTATATACTCT ATAAAATACTGTCCTTGCTTGATTTATTCTAAGCTTCCATCCATTAATGTTCAAATGCTGCTTGAGAATGGTGTCCCTGA ATCAAAAGTTGCTCTTATACTTCGTCGTTGGGGTCATATCGTCAGTGAGCATCATCCTATCATTAAGAAGGCAGTGGAAG AAGTAAAGAGATTAGGATTCAACCCCGCCTCGACATTTTTCATTGTAGCAGTGATTGCTAAGATGATGAACGATTCCCTG TGGCAAAGGAAGACTGATTTGTATAAGAAATGGGGCTGGTCTGAAGAAGTTATTGTTTCAGCATTTGTGAGACATCCATG GTGCATGCAGGCATCTGAGAAGAAAATTGAGTCTGTGATGGAGTTTTGGGTCAACCACATGGGTTGGGACTCTCTGGTGC TTGCCAAGCAACCGATACTTCTTACGTTGAGCTTGGAGAAAAGAGTTATTCCCAGGGCTTTTGTCTTGCAATTTCTTCAA AGTAGAGGTTTGATTAAGGATGCTAAATCGCCTACAGCGTTTAAACTTACTGATGATATGTTCTTGCAGAAATTTGTGAA TTGTTTTGAGGATGAAGCTTCTCAGCTGTTGAAGCTGTATGAAGAGAAAAAAAATCAACCAAGATAA
Protein sequence (LotjaGi6g1v0307700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFGLLNRRALLCSNLKTTITRTPSFLQHFSSSEQHSFTTNYLINNLAFSPETASSISTRVRLDNSEKPDSVLALFRTHGF TNHQLSQIIRTRPLFLSSDPNTAILPKFNFLLSKGASTSDLVEIITKDPWLMHYSLENAITPCYDFLKRFLVSDESTIYS IKYCPCLIYSKLPSINVQMLLENGVPESKVALILRRWGHIVSEHHPIIKKAVEEVKRLGFNPASTFFIVAVIAKMMNDSL WQRKTDLYKKWGWSEEVIVSAFVRHPWCMQASEKKIESVMEFWVNHMGWDSLVLAKQPILLTLSLEKRVIPRAFVLQFLQ SRGLIKDAKSPTAFKLTDDMFLQKFVNCFEDEASQLLKLYEEKKNQPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 365 | 345 | 1.8E-164 | – | |
| PANTHER | 21 | 365 | 345 | 1.8E-164 | – | |
| Gene3D | 45 | 222 | 178 | 4.0E-21 | ||
| Pfam | 72 | 167 | 96 | 9.3E-17 | ||
| SMART | 86 | 117 | 32 | 0.31 | ||
| SMART | 122 | 153 | 32 | 4.6E-4 | ||
| Pfam | 176 | 341 | 166 | 7.5E-17 | ||
| SMART | 191 | 221 | 31 | 650.0 | ||
| SMART | 259 | 290 | 32 | 0.0066 | ||
| SMART | 291 | 325 | 35 | 1.0 | ||
| Coils | 346 | 366 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Double-stranded DNA binding | Interacting selectively and non-covalently with double-stranded DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0307700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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