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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0308200 |
| Transcript ID | LotjaGi6g1v0308200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60S ribosomal protein L18a, putative; TAIR: AT1G17080.1 Ribosomal protein L18ae family; Swiss-Prot: sp|Q8L9S1|R18AL_ARATH 60S ribosomal protein L18a-like protein; TrEMBL-Plants: tr|I3T9B4|I3T9B4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0308200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62551163..62555470) extracted from Lotus japonicus Gifu genome v1.2.
CGCCAAACAAAATGCAGAAACATCACGAAAACAAAAACAACATGATTTGTGAGTGTACGATGAGAATTGAAGAAGAACAA GATGGGTGTCAATTCTTCTCCTATGAGCGAGGAGGAAGGTACGAACAGAGGAATAGCCACCGATCACCATTACTATGGAA CCTTTCAAGGCGTTGCTAATTACTACCCTTCTCCTCCTCCTCCAAATCCAAACTCTCCCGCTTCCAACGGTGGCGCCTAC GCTTATTACCAAGGACAAGGACAAGGGTACCACGCTCTTCCAGGTACAAACAAGCATTGATTTTTATTGGATTCAGTTTC TATTTTTGATTAATTTGAGGTGTTAGGTTACAAATAATAATGTATTCACAATCATCTTTGTAATGTTATGCCAGTTTATG CTGTTGCGGAAGGAAGGCCTGTAAGAGAACGTCGTCTTTGTTGCTGTGGACTTGGTCTCGGTTGGTTCTTGTGAGTTTAC TTTGCCAGATTCTATTTTTTTTCTGAAGTGAAAGTGTTTAAAGATTTAAATTGCAACTTGCAAAGGCTCAACACAAAATT CATGATAAGTACCAAATTTGCATTTCAACCGCTTTGCCGTGTGCCCGTGTCATGAAATTATCTGGAATGTCTTTGTCTCT GTTCATATTACTGGCTTGTAAAGTCTCCCAATCAGAAATGCTAACTTAACTGTAATTAGCTTGAAACTTTCTTATCTGGT TTTTATTCATTAATTACTTGCTTCATTGTACTAGTGCTTGTCATTATGAATATGAGGTTAACATAATGTTGGAGGTTGGC TGCCATGGTCCCTTTGTTATGATTGTAGTTCCACTTTTGTCAAGGCTTATGAGTTATTTCATATGTTGCCTCAGGTCTAT TTCTAATGAAAATGCCATTTCAACTGGGAAGTATCTTATAGTAAAAAAATTGTCTGAAAATTTGGGTATTTTTATGACTG AGTGTGTTATATTGATTGTATTGTGTTGCTCCTTCCATGTACTTTTCGCTCGCCTATCCTTGCCAATCCTTTTTCTAGTC CCTTACCCTCCAAATGTGGAGAAATTTCTCCTTGATGATCCTCACTGGCAGTGCTCTCTAAGACTTCCTTCTTTTGAAGA ACCAAAGAATTAATGATAAAATGCGTGTTTGAAAGAGACACAGAAAATACTTCCCTAATATTTGCATTGTGTGTTTTCCT TACTCTCATATCAGTAATCAATTTTTTCTACACTACCCTGTTAGGCAGCTCTCTGTATCTTTTAATCAGTGTAGACCTTT AACAGAAGATTGAAAAAAGTATTGTCATTCGAAGGCACAAAAACCCACCTTTTCCCAGAGAAAAGTGTGAGCTCCTTCCA TTAAATTTATATTTGATCCGTGCTCAATGGTAAACCAAGTTGGCTCTAATTATGTTAGAGGGATGCTGCTTTCCAATGTG TAATGACATTGTATAGCTTTTTGTCATTGAAGCATGTGCTTTTTATTTTTGCTTTTGAATTTCTGATTTTTTTTTGTAAG GTTCAAGAAGACTTGTCCTCTTGCTTTATATCTCTCTCTCTTTTACCCTAATTTTTCATCTTTTTGTCTTCTTCGTTTGA AAAGAATTGTTTTGTGTTGCTGAATGGATCTTCATCTCATGATCATGGTGAGTACTGGACAAAAGAAAACTTAGCCACTA CCTGTTTACGTGGAAAAATAAAAAAATTATAATGAACCATTGGACAATGTAATATACTAATATGTATCAAAACCAAATTG AAGTGCTATTAAGAATTTATCAGATCATCACGCAATGTTTTGACTTAATCAAGAATAATAGAAGTAAATGCTTTAGTTAA GATGAGCACAAATCATAAGAGGTCAGATTAAGATTGGATGCAATGAGCCAATGGCTGTTATGCTCAATGGCCAATGGCCC CCATCTTTACGATTAGTGTGATGATGATGGTAGAGGTTTGATTGTCTAAATAATAAACCATCTATCTCCCTCTCCAACTT TCGATAGTATTGTTAATTTTTTCTGATAATATTGATGGACCCTATTTAATTTGTATTTGAAGGTTTATAACTGGTTTTTT TCTTGGTGGCGGTCCCTGGTACATTGGAGCTTTCTTGCTACTATGTGTGCAGATGGATTACCGAGAAAAGCCTGGATTAA TTGCATGCGCAGTTGGTGTAAGTGTTTGTTGCATATTATTTCATTTTTCACTTGTGTTGGGTTGTGTTTATTGTATTAAG GCTGTGGCATAGTAGGGGGCTAGAAATTTTCCGAAGATAGCTTTGGTTGTTGCACTCTCTTAAGTATCCATCTCATGTAT TTTTTTGGCTGTTGATGATTGGATGACAAAATCCCATTTTCTTATCTGCTGGTGTCATGAGAATCTTGTAACTTCCTAAA GTCCTCTAAATGGAAACTGAAGTTCAACAGCTAGCTTAGTTCCTAAAAAGCAGGATCTAGAAGCGACTTCAGTAACACAT TTATGGTGAGGTTATTTTTAGTATTGAGAATTGGAAGTGAGTTATTCAATCAGGAGAAGTTGGGTTAGAGTGGAAAACAG TGTTTGAGATAATAGGCATGAAGTCATTAGATAGAAGGTTGGTATGTGATTTGAGCATGTGTGAAGACCAATAGAAGTAC TGATTAGGAGGGTAGACCAGATGGAGAATAGTCCAATAGTTAGGGATAGAGGAAATCAGGGAAAATTATAGATCAGACTA ATAAGAGAGATTTATATTTAAATGTTATATTATTAAACATTATTAAGGTACAGGGCATTATGACATTACTGGATCCATTT TATCTGCTCCATGAAAGAGTTTGATTATAGTTGTTGTGTTATCATTGTAGATTGATGATTATATAGGACGAAGAAAATAT TTCATATTCAAAACTATGTTAGATGCATTCGTTCGCACTACTTGGACATTCTAAAATTGGGACATCCAATCAACACCCGC AGTTTGTGGTGGTTTGTTACAGCCACAAATAGCGAGAGTTAAAAAGTCTTAAAATGCATTTTTGATGATCTGAGACTGTA CGCAAGCTTTGTGCTCACATATGTCTCAAGCTGCCAGAAATGCTTCTTATGGTTTTTGCTATTTTTCGCAAATTGCGGAC GTCTAACTGTTGACTAGATGTCTCGAGTTTTGGATGTCTGATAATCATTATCCTATATGATTTAGGCTGCTATGTAAATC CGTAAAAATATCATCTCCTATACTAATATGAGAAAAAAATGCTCAATATTGTTTTACCATGTATGCCTTCTTACTATATT TGATGATTGAGCATAAAAATAGGATCCTTGTTGCTAGGACGTCAAGTTAATTGTCTACGCCTTTAACAAGATAGAGATTT TTCATTTGAATAATGCTACTAACTACTAAGTACTAACAACACACATCATCTTGCATCATTACAATTTTCAACATCTAATT ATAATTGAATGGACCTTGTATTTTGCTCTCTCATACTTTTCTACATAGTCTGATGTACTTGATGGTGATGTACACCAAAC ATTAATCATATTTTAAATTCATCCTGGTACTTTCTCACAAACATCCTTTGTGCGCGTCATTTTTTTAAGAGAAAGCTCTT AAAAATGGTCTTATGGAAACTGATGTATAATCACATTAATTCTGTAAACACTCTAAGAAATTAACAAAATCATCAAATTA AGTTTTATGTTGCCACTAAACAAAGTTTCTAAAGAACGAATTTTGTGATGTTTTTAGATCTGTAGGATAGTTTGTTAGTA CATAAACATTCAGAAGATTAACGTGATAAATCATAATACATTGGATTTGAAAGATTTAGGAGCTTTACTTAATTTATTTA TTAGTATTATATTAGACTTGGATTGGAAGTTTTCATCTTGTCTGTGCTCACTTCAACTATGTACTTTTGTATTTACAGTC CCTCGTTGCTGTGATAGCTGTTACTCTTGGTGTTGCACATCCACATCTGGCAAAGTTGACATGAAAATACAAACTATGGT GTGTTTGATTTTCCACTCCAAGATCCGTTAGGGCGGTTTGGCACCTCGAAATTTTGAATCTCCAATTCCTGTGCAGAGAA CGTGAAAGGAAAAGAGGAGCTAAGTTCAGTTGAAATGCTAACCGGCATTATATATTATTGTACATTGAACTGTAGAATCT TTTATAGCTGACTGCATTTTCTTGCAGAAGAAGATGACAAAGTTTGTAAAAATGATACGCACCTCTTTATGTATGTTTGA CAAATTAATCAATTACAAGTTTGTATGAAGTGTTGTTTTAATATTTTTAATAGTAAAAGTTATTTATG
CDS sequence (LotjaGi6g1v0308200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGTCAATTCTTCTCCTATGAGCGAGGAGGAAGGTACGAACAGAGGAATAGCCACCGATCACCATTACTATGGAAC CTTTCAAGGCGTTGCTAATTACTACCCTTCTCCTCCTCCTCCAAATCCAAACTCTCCCGCTTCCAACGGTGGCGCCTACG CTTATTACCAAGGACAAGGACAAGGGTACCACGCTCTTCCAGTTTATGCTGTTGCGGAAGGAAGGCCTGTAAGAGAACGT CGTCTTTGTTGCTGTGGACTTGGTCTCGGTTGGTTCTTGTTTATAACTGGTTTTTTTCTTGGTGGCGGTCCCTGGTACAT TGGAGCTTTCTTGCTACTATGTGTGCAGATGGATTACCGAGAAAAGCCTGGATTAATTGCATGCGCAGTTGGTTCCCTCG TTGCTGTGATAGCTGTTACTCTTGGTGTTGCACATCCACATCTGGCAAAGTTGACATGA
Protein sequence (LotjaGi6g1v0308200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVNSSPMSEEEGTNRGIATDHHYYGTFQGVANYYPSPPPPNPNSPASNGGAYAYYQGQGQGYHALPVYAVAEGRPVRER RLCCCGLGLGWFLFITGFFLGGGPWYIGAFLLLCVQMDYREKPGLIACAVGSLVAVIAVTLGVAHPHLAKLT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 88 | 88 | - | – | |
| PANTHER | 8 | 145 | 138 | 3.4E-51 | – | |
| PANTHER | 8 | 145 | 138 | 3.4E-51 | – | |
| Phobius | 89 | 113 | 25 | - | – | |
| TMHMM | 91 | 113 | 23 | - | – | |
| Phobius | 114 | 124 | 11 | - | – | |
| TMHMM | 125 | 144 | 20 | - | – | |
| Phobius | 125 | 144 | 20 | - | – | |
| Phobius | 145 | 152 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0308200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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