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LotjaGi6g1v0309200.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0309200
Transcript ID	LotjaGi6g1v0309200.1
Lotus japonicus genome version	Gifu v1.2
Description	DUF538 family protein (Protein of unknown function, DUF538); TAIR: AT5G46230.1 hypothetical protein (Protein of unknown function, DUF538); Swiss-Prot: sp\|Q9SKT7\|NDB4_ARATH External alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial; TrEMBL-Plants: tr\|K7MAI5\|K7MAI5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0309200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:62636456..62637798) extracted from Lotus japonicus Gifu genome v1.2.

CACAAAAATCATGACAAAAGCTCACCGGTTTTTCATCACTAAAATGTGATCTGGTTTGACTCATATATCTCATGACTCAT CCCATCCCCATTTAACTAAACTAAACTACCACACCCACACAAAACTAACTGTCACTGGCCCCACAATAAGACACCTTCTA ATTCCTATTCTAATTCTAGTTACACTCTCACTGAAATTTCTCATCTCATTCTTGAATCAACCTTCAAATTTTCCCATCAA ACTTCCTCAGAAAATCCAAACAAACAAAAAACACATCCATATCCATACATTGTTTTTGATTGATCAATAAACCATGGCAA CACAACAGCAGAGAGAAGAGGCAGAGATCTATGAGGGAGAAGCATTGTGCAAGCAAAAATCTCTGCTTCTCATGGATGAG ATTCTCCTCCCAAGAGGATTGCTTCCTCTGGAAAACATCTTTGAGATGGGTTACAACCGCACCACCGGTTTCGTGTGGCT GAAGCAGAGGAACAAGAAGGAACACCGCTTCCACAACATCGGCCGCACCGTGTCGTTTGACAAGGAGGTGACGGCGTTCG TGGAGGAGCACCGCATGCGGAGGCTCACCGGAGTTAAGACCAAAGAGCTCTTCATTTGGCTCACCATCTCTGAGATCTTC GTTGATGATCCGGCTTCCGGTAAGATCTCATTTGGCAGTTCCTCTGGGATTGCCAGGTCCTATCCTCTCTCTGCATTTGC TCTCCAAGAGGATCAAACGTCACAACAACACCAAAATGCAGTTGCAAGAAAAAAGTGATGCTATTAATTGATTTTGAAAT GTAACTGTATGTTACTCTTTGGAAGAATCTCATGATAAGACACATATATGTTAAATGGAAAATCATAAACCACAAGTACT TCCAATAAGATTTCAAGCATGTTCAACATTGATTTCAATATTTCCCACTACAAGGTACCCTCTGTTGTAGAATTACATTA GAAATAAAATTACACAATTGATATCACTATAGTCCGTGTCTACTGTATATAACAAGAAACGAACTTCAAAAAAAAAAAAA AAAACAAGAAACAATTGAGTTTTAGAATGACAATGCATGAAAATTAAACTCATTCGGATAAATTCAAAAGGAATGGTTAT GGAGATACAAACATATTTCAATATACCTCACATTATGGTCACTTCTTCACTAAATTCAAACAGATCATACATCATACACG GAAGCCAGCAATTGAGACTACACTGCTGCTTTTGAATTTTGATCTTTCTTGCATTCCTTGTTCTTTTTCTTTTTCTCCTT ACTTTCTGTTGATGTTGTAATACAGGACAATAAGAATGAGGGTAGAGATCAACAAAAATGTAC

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0309200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAACACAACAGCAGAGAGAAGAGGCAGAGATCTATGAGGGAGAAGCATTGTGCAAGCAAAAATCTCTGCTTCTCAT GGATGAGATTCTCCTCCCAAGAGGATTGCTTCCTCTGGAAAACATCTTTGAGATGGGTTACAACCGCACCACCGGTTTCG TGTGGCTGAAGCAGAGGAACAAGAAGGAACACCGCTTCCACAACATCGGCCGCACCGTGTCGTTTGACAAGGAGGTGACG GCGTTCGTGGAGGAGCACCGCATGCGGAGGCTCACCGGAGTTAAGACCAAAGAGCTCTTCATTTGGCTCACCATCTCTGA GATCTTCGTTGATGATCCGGCTTCCGGTAAGATCTCATTTGGCAGTTCCTCTGGGATTGCCAGGTCCTATCCTCTCTCTG CATTTGCTCTCCAAGAGGATCAAACGTCACAACAACACCAAAATGCAGTTGCAAGAAAAAAGTGA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0309200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATQQQREEAEIYEGEALCKQKSLLLMDEILLPRGLLPLENIFEMGYNRTTGFVWLKQRNKKEHRFHNIGRTVSFDKEVT AFVEEHRMRRLTGVKTKELFIWLTISEIFVDDPASGKISFGSSSGIARSYPLSAFALQEDQTSQQHQNAVARKK

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31676:SF7 View details on PTHR31676:SF7 Search for proteins/transripts with this domain View external data on PTHR31676:SF7	3	139	137	2.4E-55	–
PANTHER	PTHR31676 View details on PTHR31676 Search for proteins/transripts with this domain View external data on PTHR31676	3	139	137	2.4E-55	IPR007493 Show description in modal box View details on IPR007493 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF141562 View details on SSF141562 Search for proteins/transripts with this domain View external data on SSF141562	7	143	137	2.88E-33	IPR036758 Show description in modal box View details on IPR036758 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:2.30.240.10 View details on G3DSA:2.30.240.10 Search for proteins/transripts with this domain View external data on G3DSA:2.30.240.10	12	146	135	4.2E-20	IPR036758 Show description in modal box View details on IPR036758 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04398 View details on PF04398 Search for proteins/transripts with this domain View external data on PF04398	26	136	111	4.5E-30	IPR007493 Show description in modal box View details on IPR007493 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0309200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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