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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0309300 |
| Transcript ID | LotjaGi6g1v0309300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein (DUF616); TAIR: AT5G46220.1 transmembrane protein (DUF616); TrEMBL-Plants: tr|A0A151RWD5|A0A151RWD5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0309300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62638334..62641337) extracted from Lotus japonicus Gifu genome v1.2.
CCAGCTTCAAGAGCGCCGCACCTAGATATGAACAAAAGTAACATGTTGATGAAATTGACAAGTAACCATATCCGTGGGCC ATTCAAACAATCCTCCATAACACAAAACACTAGAATGGAAGAAACCAAATCCATGAAACAGAAATCCCCAGAAAATAGTA CTATCACTACTTCATTATGGGGAAACTCATAACCACTTCCAAACCTCTCATTCTCCAATCAAAACTCCTCTGTTTTTCTC TGCTCTACCTCTTCACCACACTCTTTCTTGCTCTCTACACCACTCTCTCACAATCCAAATGCCTCTTCAGATCATCCCCT TTAGATCCCCTCCAGAAATCACTTTTCTCTTACCCTTCTTCCTATGGAGAACACAAATATGCTGTCTCTACCACCCGTTC TACATGTTCTTCCCCTGTTTTCTTTTCAGGTAATTAATTCTCCATGATCATGTTCCTGAATAATTTGTTTACATGTTCCC TTTTACGATCAAACATGATCACTTTTTGTTAATGGGTTGTGTTTCATGGATTCAGATTACTGGGATGTTGTGAAGGAGAT CAGCAATTTCAACAAGAATTCTCTATCTTCTTCAGGGGTTCTGAGATATATGCAGGGGAATGCTAATACATTTGGTGGGA ATCTCAGCACCCTTGCGAGGTTTTCTTATTTTGATCATCAAAATGATACCACAGAAGTCCCCTGCGGATTTCTGAAGAAG TTTCCAATCAGTGGTTCTGGTAAATTATGAATGAATTCAATTAGCATTCAAGTTTTTTTTAATGGATGGCAATATTCTAA TGTTATGTATTTTTTTGTTGTTGATGTAGATCGAATTGCCATGGAAAAGTGTGGCAATGTGGTTGTTGTTTCAGCAATCT TCAACGACCATGATAAAATCCGACAACCGAGGGGGCTTGGATCCAAAACACCAGAGGATTCATGTTTCTTCATGTTTGTA GATGATGTTACCCTAAAAGGTCTTGAACATCATGGATTGATTTCAATGAAATCTAGGGAATACAAGGTTGGTGTGTGGAG GATTGTGAAGGTTGTGAAAGAGGATTTGTATGAGAATCCAGCAATGAATGGTATCATACCAAAATATTTGGTTCACAGGC TATTTCCAAATTCCCAATTCAGCATTTGGATAGATGCGAAATTGCAATTGATCGTTGATCCATTGTTGTTGATTCATTCA CTTGTTATATCTGAGGATGTGGACATGGCTATATCAAAACACCCTTTTTATGTTCACACCATGGAAGAAGCAATGGCAAC TGCAAGGTGGAAGAAATGGTGGGATGTCAATGCCTTGAAGGTGCAAATGGAGACATACTGTGAGAATGGACTACAGCCAT GGAGTCCCGACAAGCAGCCCTACGCATCAGGTAATCAGAAATTTTCGTGAGTCTTAATTGGATGTCGGTGTAAAACTGTA CTACACTGTCGTCATTACATAGTTATTAAATTCTTGAAAATATTGACCAATTCACGTTGAAAGTTGATGAGATTGCTTAT GCTTGAATGCTTGATCAAGGAAACTGCCAGGCTAATAAGTTCAATCCAATCCAAATTTTGAAATCACATATTTGACCATT AGTATAATATAGCCCTTTAGCCTTGCAATGTCTTCAATGGGGAAGGCTTGTCTGAGGAAGGTTTCTTTCATATGGGGGAG TTTGAAGCTTTGGTGCTACTCCATTAGGTTTCTTTTTCATTTCAAGGAACCAGCTTAAGATTTCAGACTCATGTATGAAG AAATGTCACCCCTTCACTTTTCAAATGTGGCCCAAGAGCTTTGGATCTTTGTCATATTAGGCACAACACCTTTTTTTGGG TTTTGTAAAACATGGTTAAGCTTTATCTTTTCCTTAATTTTGACTTTTCACTTAGTGTTTGGAAATCTCTATATAATTTA TTCCGAAATTGGTCCTGTTGAGAAGCTCATGTTGTGTTAGCTAGCTAGTTACTGTGTTTCATGTGGATCTGTTTATTATC CTAAAGAATGATGCTGCCTTCAGTGCACAAAATATTTAAGTATCCTATGTTCTGTCTTTAAGTGTTTGTCTCATTCAATT CTATTTGAGAAAAAATAATTTTAGATAACAATTTAAAGAGATTAATTCTGCTAGAACTTATAAAGAGATTAGCTTATGCG TTGAACAAAAATCAATTTTGAGTTTTTACAAGTGAATTTCCCAATAAAAACATTTTTTCCGTAAATTTTGTGAACATGAA TCACTTTTTTTTTACCTGACTTTTATTATAATCATTTTTGTCAAAATTTCATCCAAAATTAATCGAGTCAACGCTGATTT AAACACGCACTGATTGGTTTTGGCAGATGTACCGGACAGTGCTTTGATCTTGAGGAGGCATGGATTGGGAAGTAACCTCT TCTCCTGTCTCATGTTCAATGAGATGGAGGCATTTAACCCAAGAGACCAATTGCCCTTTGCATTTGTTAGAGATCATATG AAGCCAAAACTGAAGCTGAACATGTTTGAGGTGGAAGTTTTTGAACAAGTGACAGTGGAGTACAGACACAATCTCAAGAG CAGTGTCAAGAAAGTGAGTAGTTCAGGAAGAAGGACCAAAAGGGCTGTCCCAGATTTGTTGTTTGTGAATAACAGGTGCC AGAAGTATCTATCCACAGTGTGGGGAGAGTCCAATGATTGATAATGATACCCCACAAGCACAGAAAACAAGCCAAAAAAT AAAATAAAATTGAAGATGAAAAGAAAAGAACCTAATGAGTATTTAACAGTTTGGAGGTGATTATCAATGAAAACAAAAGA GACACACACACAAACAAAAGAAAAACAATTCTTTTATTTATACAGAAAAGCTGACAACCTGTTACAGTTTACAGGAATGT TTCCTCTGTTCTTCTCTTCTGAATTTATTTATTTCTAAATATTCTCTATGCTCCAATTCTTTTTTGACTATTAAATTTGC TGTGGGGCTGTATAGTGTGCAAAGAATAATGATATCATTAATTA
CDS sequence (LotjaGi6g1v0309300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAACTCATAACCACTTCCAAACCTCTCATTCTCCAATCAAAACTCCTCTGTTTTTCTCTGCTCTACCTCTTCAC CACACTCTTTCTTGCTCTCTACACCACTCTCTCACAATCCAAATGCCTCTTCAGATCATCCCCTTTAGATCCCCTCCAGA AATCACTTTTCTCTTACCCTTCTTCCTATGGAGAACACAAATATGCTGTCTCTACCACCCGTTCTACATGTTCTTCCCCT GTTTTCTTTTCAGATTACTGGGATGTTGTGAAGGAGATCAGCAATTTCAACAAGAATTCTCTATCTTCTTCAGGGGTTCT GAGATATATGCAGGGGAATGCTAATACATTTGGTGGGAATCTCAGCACCCTTGCGAGGTTTTCTTATTTTGATCATCAAA ATGATACCACAGAAGTCCCCTGCGGATTTCTGAAGAAGTTTCCAATCAGTGGTTCTGATCGAATTGCCATGGAAAAGTGT GGCAATGTGGTTGTTGTTTCAGCAATCTTCAACGACCATGATAAAATCCGACAACCGAGGGGGCTTGGATCCAAAACACC AGAGGATTCATGTTTCTTCATGTTTGTAGATGATGTTACCCTAAAAGGTCTTGAACATCATGGATTGATTTCAATGAAAT CTAGGGAATACAAGGTTGGTGTGTGGAGGATTGTGAAGGTTGTGAAAGAGGATTTGTATGAGAATCCAGCAATGAATGGT ATCATACCAAAATATTTGGTTCACAGGCTATTTCCAAATTCCCAATTCAGCATTTGGATAGATGCGAAATTGCAATTGAT CGTTGATCCATTGTTGTTGATTCATTCACTTGTTATATCTGAGGATGTGGACATGGCTATATCAAAACACCCTTTTTATG TTCACACCATGGAAGAAGCAATGGCAACTGCAAGGTGGAAGAAATGGTGGGATGTCAATGCCTTGAAGGTGCAAATGGAG ACATACTGTGAGAATGGACTACAGCCATGGAGTCCCGACAAGCAGCCCTACGCATCAGATGTACCGGACAGTGCTTTGAT CTTGAGGAGGCATGGATTGGGAAGTAACCTCTTCTCCTGTCTCATGTTCAATGAGATGGAGGCATTTAACCCAAGAGACC AATTGCCCTTTGCATTTGTTAGAGATCATATGAAGCCAAAACTGAAGCTGAACATGTTTGAGGTGGAAGTTTTTGAACAA GTGACAGTGGAGTACAGACACAATCTCAAGAGCAGTGTCAAGAAAGTGAGTAGTTCAGGAAGAAGGACCAAAAGGGCTGT CCCAGATTTGTTGTTTGTGAATAACAGGTGCCAGAAGTATCTATCCACAGTGTGGGGAGAGTCCAATGATTGA
Protein sequence (LotjaGi6g1v0309300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKLITTSKPLILQSKLLCFSLLYLFTTLFLALYTTLSQSKCLFRSSPLDPLQKSLFSYPSSYGEHKYAVSTTRSTCSSP VFFSDYWDVVKEISNFNKNSLSSSGVLRYMQGNANTFGGNLSTLARFSYFDHQNDTTEVPCGFLKKFPISGSDRIAMEKC GNVVVVSAIFNDHDKIRQPRGLGSKTPEDSCFFMFVDDVTLKGLEHHGLISMKSREYKVGVWRIVKVVKEDLYENPAMNG IIPKYLVHRLFPNSQFSIWIDAKLQLIVDPLLLIHSLVISEDVDMAISKHPFYVHTMEEAMATARWKKWWDVNALKVQME TYCENGLQPWSPDKQPYASDVPDSALILRRHGLGSNLFSCLMFNEMEAFNPRDQLPFAFVRDHMKPKLKLNMFEVEVFEQ VTVEYRHNLKSSVKKVSSSGRRTKRAVPDLLFVNNRCQKYLSTVWGESND
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 40 | 40 | - | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| PANTHER | 1 | 450 | 450 | 1.6E-238 | – | |
| PANTHER | 1 | 450 | 450 | 1.6E-238 | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 17 | 32 | 16 | - | – | |
| Phobius | 33 | 40 | 8 | - | – | |
| Phobius | 41 | 450 | 410 | - | – | |
| Pfam | 113 | 407 | 295 | 7.8E-110 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0309300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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