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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0310600 |
| Transcript ID | LotjaGi6g1v0310600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF1365 family protein; TAIR: AT1G30130.1 DUF1365 family protein; Swiss-Prot: sp|Q99733|NP1L4_HUMAN Nucleosome assembly protein 1-like 4; TrEMBL-Plants: tr|A0A151RWJ1|A0A151RWJ1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0310600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62930591..62934411) extracted from Lotus japonicus Gifu genome v1.2.
CATTTCCCTCCATTTTAGTTTTCTTCCACTCTTGTATTGTATCTTCTATTCTTCTAAAATATTAAAACAAAACAAATTAG GCAACCAAAATTGCTCTTGTGGTTGCATTGCAACCATAACAAAGGCAGCCAAACTAATAAAGGAAGGAAGAGACTTGACT TGATTTGAGTGGTCAAAAGCTTGTTAACACAGAACACGATAATGGAAATTCTTTATCTTCTATGCTCTATCATCTCCAGC TCCTTCACTTCACTCATACTCTCCCTTCTCCTTCCATTTCAAGCACTACTACGGCGGCTAGGAACCTCACGCGCCGCATC TTCCTCCACTAATGGCGGAGCTGAACCGATATCTCTCTACGAAGGTACAGTCTGGCACCAACGCCGGCACCCCGTTATCC ATTCCTTCAAATACCAGGTCCGCTACGCGCTTATCGATCTCGACCGTGAGTCTCACGCGCCGCCGGGTCACATTTCCTCC GACGAGGCTCGCCAGTTAACTGACACCGATGGACCCATGTAATGAATCTTCAATATTCTCTATTTTTGAACCATTGGGTT CTCTCAGAGCCATGCAAAATTTCACCTTGTTGTTTCATTTGACTTTTTAGCTTTGATTTGAAATTGCTTAATGTTGAAGT TGAATCCAATTTTGCAGCTTGCTCTTGACAATCCCTCCTAGTGTGGGGTATGAACAGAATCCTTTGAGTGTGTATTATTG CTATGATGTTGAAGGCTCATCTACACGTTTGAAGAAGTGCATTGCTGAGGTGTGTGGTAAAATATGCTCTCTGTTCTTAG TTTCTAAGGCTTCATATTATGTATGTTCCTAGCTGAAATCATGAATGGCTAATGTTTTTTTTTTCACCATCAACTCCATT TTACTTTCCCAAACCAATTAGAATGATGAAAATACAATAAAATTAGGCCTATAACTTTGATGGGGTTTCTTACTTTCTTT TAATATATATTTTTTTGGCATTAAGCAATCGACTGCATTTTAGAAGCTTTCTTTTTTAAGATTCTCTTTGTTTAATGAGA AGCAGTTTATGGTGTCTTTTTGTGGGATATGTAATTTGGATCTAATATTTGAGAAGTCAGGATTGTTCTTTTCCAATTTT GTTAGCAATGTCACTAGTTAGAATATTACTAAACTGCTGATTTTTTGTTTTGTTTCAGGTAACAAATACACCATGGGGTG AAAGAGTATCTTTTATTTTCAATCCGCACTCTGATTTAGTAGCCAAAGCTTTGCATGTCAGCCCTTTTATGGTATGTAAA CTATGCCATTTTCTTTGCTGCATATAGGACATTTTGGTTCAAATTGTTACTTGTTCTGTGACTATTATTAGATGGAAACA ACAACAGTGGTTTCCTTACCTCCACTCTTTCCTTATAATGTTTGCTTCTTCTTCTTTTGATTTTTGTGTCTTGTTTCACA TTGTCCTGCAACTGATTTTGGTGTTCATCTTTCTAAACTAAAACAGTTTATCCGGTGATTTTGAGTCTATTTGCACTGAT AAAAACAACAAGAGATAAATTTTGTATTTTTTTTTTTTATTGAAGCATGGTTGACGGATATATATTTTCTGTGACACCAA ATGAACTGTTATGTTCTCACATTCACATAACACTGTCTGCAAGTAATTAACCAATGTTTGATCAGTTGAGGAGCTTTTTT GTTTTTTACTCGTTGTGTTCTTGTATTCATTCATGTGCCCAAACTAGCTAGCGTGATGCTTCTGATTCAGGTTTCGGCTG TTGGAAAAAGGATTAGTTATATGACAGTCTGCTGTATACCATTGTTTGGAGTTTTGTTTACAGAGTATTTGTCATACTTT TAAGGGGTAACCGCTCTTGTTTGATCTGCTATGGGATGAATGCATTTTGAAAAATTACAAGAATAAAGCTATGGTTATAA GTATGAACTTACAAATGTAATTTTGTATATTATATGGGATGATCTTCACTTATAATACTTCATTATATGATGTGTTTCTA TTTGAACGCAAGTTAAATTTTTTGTCATTCTCATAATAGAGAGTAAATACAGAATTATTTACTATCACTTGTTAGTCAAA TGCAACTGGAATGAAGTGATGTAACATAGACTTTGGATTCGTAAGACATCACAATTCTTATACATATCATGGTTTGCTAT TTGATGCTTAGCCTACATGGTTAAATTTATATAAAATCACAATAAGTTAAAATAATTTTCTGCATTTTATTGGTAAGAAT CTCCTTGAACTATTGTAGGATATGCTTGGGAGTTGGAATATCAAAGCAAATGACCCTGGAGAGAATCTTTCCATATCAAT TTCAGTTCATCATCCTGAGCATGGAAACTATTTTACTGCCAGCCTGAAAGCCAAGAAGCTGTGCTCATCATCAGAGCCAG ATCATGCAGTTTTCTTTTGGTTGATGCCTCATAAGGTTGCAGTATGGATATATTGGCATGTAAGCTTCAATTTTGCTATA CCTCTCTCTTACTGTGTTCTTAAAGTGCAAATTCTATCAGACTGATAAGTTTTTCTTAGCTAGCAATTTAGAATCACACC TTGCCCTTGGTGGCATGACACCATCGTTTTCTTCCAGTATAAGAACATGTGAATTTTTTTTCAAAACTTGAGATTGGGAT ACTAGAGGACTAGTTTGGGCCTGTAAGTCAATCGATTTTTGCATTTGAGTTGAGAAATGCATCCTAATTTTCTGTGTTTA AAACCAAATGATTCCGTAGATCAGAAACACATTATTTTGTGTGCTCAAGAACCTTAGTTTTGTGACAATAGATAAATAAA TCATTTTCTTGCTTTATTTAACTCAGCATGCTGTTTTTGGAACACCTTTGATCTGTTTAGGAATTGCTTTATGTTTTCAA TTGATTTTTTGCATCTACGGAATGTGTTGTGTTCACCCTCCTGAATATTGTTTTCTCCAGGCCATTAAACTGTGGTGGAA AAATGTACGATTTGTCCAACACCCGAGATATGCCACACCCACGTACAAGGAGGAAGCTTTGATACGGGATAAGAAACTGC AATGTTGTGGCTTTAGTGATGATACCAGACATCTACAAGAAGGAGGAAGTGACCAGGTTTGTTTAGCAGAAGTAAGTCCT AGAAACAGGCGGTTTAAATGGACCGATGCTGAGTGGCCATGGTCGTAGAACATAGTAAACATTGTTTTTGGGTGATACGA AGCATTTGTCTTCACTTTTTACTTATATGAAACCGTCCCGAACGGTAATGTTGTATGCCAGTTTCTGTGGCTAGGGGTGG CCAATATATCTCATATTTTTGCAGTTGATGTCTTACATAATTAGGCCAAGAATTCTAGTATTTACCTTGTGACTACCACT AAGTAGGAGTTTTGTGAGGCTTCTGGTTTGAAGTTTTTACTTGAGAACTCTAAGTAATGTGGTTAACATCGAGAAACCCG GAGTGATGTGCTCATGAAAGTTATCTCAAAGAGGAAGGAGCTTTGACATACATTTTTCAGTCAAATGGTAAATGACTTTG GCACTTACATCGGTTTTCATTCCATTTTCACCTTTTTTTAATTTCTTAGTTTTCTCTTATTTTCCTAACACATCACTCAT CATATCATTCATTTCTCTTTATTTTATTCCTAACTCGCTTTGAGCGTGATTGGATTTGTGGCATAAGCAAAAATAATTCC TTAGTGAAGACCGAACCACATGTTACATGCTATACAAGCTCATAATATAATTTCCTGGCAACAACGTGGAAGGGGGGAAA AGGAAGAAACCAAAAGAAAAATTGTGTTCCCATGTATATTCTTCAAGAAACTCATGTGCAA
CDS sequence (LotjaGi6g1v0310600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATTCTTTATCTTCTATGCTCTATCATCTCCAGCTCCTTCACTTCACTCATACTCTCCCTTCTCCTTCCATTTCA AGCACTACTACGGCGGCTAGGAACCTCACGCGCCGCATCTTCCTCCACTAATGGCGGAGCTGAACCGATATCTCTCTACG AAGGTACAGTCTGGCACCAACGCCGGCACCCCGTTATCCATTCCTTCAAATACCAGGTCCGCTACGCGCTTATCGATCTC GACCGTGAGTCTCACGCGCCGCCGGGTCACATTTCCTCCGACGAGGCTCGCCAGTTAACTGACACCGATGGACCCATCTT GCTCTTGACAATCCCTCCTAGTGTGGGGTATGAACAGAATCCTTTGAGTGTGTATTATTGCTATGATGTTGAAGGCTCAT CTACACGTTTGAAGAAGTGCATTGCTGAGGTAACAAATACACCATGGGGTGAAAGAGTATCTTTTATTTTCAATCCGCAC TCTGATTTAGTAGCCAAAGCTTTGCATGTCAGCCCTTTTATGGATATGCTTGGGAGTTGGAATATCAAAGCAAATGACCC TGGAGAGAATCTTTCCATATCAATTTCAGTTCATCATCCTGAGCATGGAAACTATTTTACTGCCAGCCTGAAAGCCAAGA AGCTGTGCTCATCATCAGAGCCAGATCATGCAGTTTTCTTTTGGTTGATGCCTCATAAGGTTGCAGTATGGATATATTGG CATGCCATTAAACTGTGGTGGAAAAATGTACGATTTGTCCAACACCCGAGATATGCCACACCCACGTACAAGGAGGAAGC TTTGATACGGGATAAGAAACTGCAATGTTGTGGCTTTAGTGATGATACCAGACATCTACAAGAAGGAGGAAGTGACCAGG TTTGTTTAGCAGAAGTAAGTCCTAGAAACAGGCGGTTTAAATGGACCGATGCTGAGTGGCCATGGTCGTAG
Protein sequence (LotjaGi6g1v0310600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEILYLLCSIISSSFTSLILSLLLPFQALLRRLGTSRAASSSTNGGAEPISLYEGTVWHQRRHPVIHSFKYQVRYALIDL DRESHAPPGHISSDEARQLTDTDGPILLLTIPPSVGYEQNPLSVYYCYDVEGSSTRLKKCIAEVTNTPWGERVSFIFNPH SDLVAKALHVSPFMDMLGSWNIKANDPGENLSISISVHHPEHGNYFTASLKAKKLCSSSEPDHAVFFWLMPHKVAVWIYW HAIKLWWKNVRFVQHPRYATPTYKEEALIRDKKLQCCGFSDDTRHLQEGGSDQVCLAEVSPRNRRFKWTDAEWPWS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 278 | 278 | 1.2E-94 | ||
| Phobius | 6 | 24 | 19 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 25 | 30 | 6 | - | – | |
| Phobius | 31 | 316 | 286 | - | – | |
| Pfam | 52 | 257 | 206 | 1.6E-44 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0310600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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