Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0310900 |
| Transcript ID | LotjaGi6g1v0310900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphopantetheine adenylyltransferase; TAIR: AT1G30190.1 cotton fiber protein; Swiss-Prot: sp|P27612|PLAP_MOUSE Phospholipase A-2-activating protein; TrEMBL-Plants: tr|I1MF21|I1MF21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0310900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62957333..62958424) extracted from Lotus japonicus Gifu genome v1.2.
CAAATCTCAATTTTATAAAAATTCAGTACAATAAGCTTCACTCTCCTGTCACTTCCTACTTTCAGAAGAAGATTGTACAA TGAAAGAGTACAAACCAAAAGATCATACTCTAAATAGAGCAAAGAATTTGTCCTTCTTTGCCTCTATCTTCTCTCTTTTC TTCTATCTTTGTGTCTTCTACGTCTTCAATCTCTCTCCCTATACTCTTCTCAACAACAACATCTTTTGGTTTTTCATGTC AAACACTCTCATCCTCATCATAGTGGCTGACTATGGAGCATTCTCTTCATCCAACAAAAAGAAACAAGACCTCTATGAAG AGTATGTGAAGCATAGTTCTCAAGCAAGAAATCACCATGTCTCCCAACTTGTTCCAGAATATGATGAACAAGTTGATAAA CAATGCATTAATCCCAAAAAGGAGCTACATGGTGAGATTTTGCAGGAGAAGAAAGAAACTATTTCTGATCAGATTGTTCC TGAACGTGTGTTGGAAATTGTAGTGCAAAATCAACCAAAGAAGCCTAGAGAACGTGCCAATGAGAAAAAATCACCAGAGC TTCATTTGCAATTAGATGATGATGATTATTATAAAGAACTTCATGAGGAGAAAGCAATAGTTCCTGCAAGAATTTATAGG CGCACTAAATCTGATAGACACAATAGAGCCAAGCATGAGATGGAGAGAATGAACCCAGTGAGAAGGTTGGAGAGTATGAA GAAGGTGGAGCCAAAAGTTGAAGAAGAAGAAAATGAGTTTTCTAGGATGACAAATGAGGATCTTAATAGGAGGGTAGAGG AGTTTATTCAGAAATTCAATCGGCAGATTAGACTCCAGGCAACAATAAATCAATGTGCATGAAATTTAATTAGAAGGGCT TCTAGGTGTTAATTACAATCACATAGCTAGTATTCCAAAAGTTTTGCAGTCTTGTACCTTTTGTACTTGTCTAAATAATC ACATGTTAGTTGCATTTTGCTGTCTTATATTTTCTCAGGCTTGTTTACATATGGTTTACAAGTTCAAAAAAAAATAAAAA AATTTGCAAATTAATTTCAAGATATAAGGAGCGTTTAAGTTTAATAAATAAT
CDS sequence (LotjaGi6g1v0310900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGAGTACAAACCAAAAGATCATACTCTAAATAGAGCAAAGAATTTGTCCTTCTTTGCCTCTATCTTCTCTCTTTT CTTCTATCTTTGTGTCTTCTACGTCTTCAATCTCTCTCCCTATACTCTTCTCAACAACAACATCTTTTGGTTTTTCATGT CAAACACTCTCATCCTCATCATAGTGGCTGACTATGGAGCATTCTCTTCATCCAACAAAAAGAAACAAGACCTCTATGAA GAGTATGTGAAGCATAGTTCTCAAGCAAGAAATCACCATGTCTCCCAACTTGTTCCAGAATATGATGAACAAGTTGATAA ACAATGCATTAATCCCAAAAAGGAGCTACATGGTGAGATTTTGCAGGAGAAGAAAGAAACTATTTCTGATCAGATTGTTC CTGAACGTGTGTTGGAAATTGTAGTGCAAAATCAACCAAAGAAGCCTAGAGAACGTGCCAATGAGAAAAAATCACCAGAG CTTCATTTGCAATTAGATGATGATGATTATTATAAAGAACTTCATGAGGAGAAAGCAATAGTTCCTGCAAGAATTTATAG GCGCACTAAATCTGATAGACACAATAGAGCCAAGCATGAGATGGAGAGAATGAACCCAGTGAGAAGGTTGGAGAGTATGA AGAAGGTGGAGCCAAAAGTTGAAGAAGAAGAAAATGAGTTTTCTAGGATGACAAATGAGGATCTTAATAGGAGGGTAGAG GAGTTTATTCAGAAATTCAATCGGCAGATTAGACTCCAGGCAACAATAAATCAATGTGCATGA
Protein sequence (LotjaGi6g1v0310900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKEYKPKDHTLNRAKNLSFFASIFSLFFYLCVFYVFNLSPYTLLNNNIFWFFMSNTLILIIVADYGAFSSSNKKKQDLYE EYVKHSSQARNHHVSQLVPEYDEQVDKQCINPKKELHGEILQEKKETISDQIVPERVLEIVVQNQPKKPRERANEKKSPE LHLQLDDDDYYKELHEEKAIVPARIYRRTKSDRHNRAKHEMERMNPVRRLESMKKVEPKVEEEENEFSRMTNEDLNRRVE EFIQKFNRQIRLQATINQCA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| PANTHER | 6 | 256 | 251 | 7.5E-72 | – | |
| PANTHER | 6 | 256 | 251 | 7.5E-72 | – | |
| TMHMM | 16 | 38 | 23 | - | – | |
| Phobius | 16 | 36 | 21 | - | – | |
| Phobius | 37 | 47 | 11 | - | – | |
| TMHMM | 48 | 70 | 23 | - | – | |
| Phobius | 48 | 68 | 21 | - | – | |
| Phobius | 69 | 260 | 192 | - | – | |
| Pfam | 233 | 253 | 21 | 6.3E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0310900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…