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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0313200 |
| Transcript ID | LotjaGi6g1v0313200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein plastid transcriptionally active 12; TAIR: AT2G34640.1 plastid transcriptionally active 12; Swiss-Prot: sp|F4IHY7|PTA12_ARATH Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12; TrEMBL-Plants: tr|G7IP39|G7IP39_MEDTR Plastid transcriptionally active protein; Found in the gene: LotjaGi6g1v0313200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63121068..63127223) extracted from Lotus japonicus Gifu genome v1.2.
CCTCTTCAAAATGATAAGGGAAATGTCAGTGTAGCAGTAGCTTGATAAGAGACACAGCTGACTGTCTCACTCTCCGGCAC TGCAAATTCTCTCCCTCCCTCTCTGCTTCTCCAACTTCACTCTGCACCACCATCTACGACGACGTTTCGATTTCTCATCC CCACCCTCCCACCACACCACACCACACCACTACTGCAAAACTCAGGTTTCTACTTTCTAATCCGCTTTGGTTTTCTCTGA GGCGACAACTATGGCTTCCATTCAAGCCAATCTTGTTCCCAACTTGTCCTTCAACCATTTCCAGGTTAGCATAAAAGGGT GTTCAAAGTTCAATTTTTTACCATCTGGGTTGCTACCCTTTTCTTCCTTATCTGCATTTTGCATTCACATGAACTCACTC AAAAGCTAAAAAAATCCAATTTTGAAGTGGCTGAACTGAAAAAATTTACACTTTTCCTCTTATTTTCACATTTTGAAGTA ATTTATTATGTTTTTATATTATGTAATTTGTTGCTAATTTATAGTATACAATGATTGAAACCCCGTAGACACCATCATCA TCATACCTGGTAGGTGTTGGTAATTTGCAATGTAGAGTTGGTTTCAGCAAGTCAAGGAGGAGGCTTCCTTCTCATATTTG TATAAAGTGTTGTGAAAAAAAGAAAGATGAATATACTGAGCTTGAGCATGTATCAGTTGAACGTCCACCCTATTACAGTT ACATGGACTCCACCTCCGGTCAGCTTGAGCCGGCTTCCGGTGCTCGGTCCAGTCTTCCTGAAGAAGACTTATGGCCTGAA GGAACTGTTAATCAAGTCAGGGCTGGTAGAGCACCTCCTCCGACTGGTGAATCGTCAGGAACGCCGTCTTATGGAAGCAA GCCTGGGAGTAGGAGGAAGAAGGGCAGAACTTCTATTTCTGCTTCTTCTGATGATGGTTCTTCCTCTGAGGCTGTTGCTG AATCAACTGACACTGCGCTGCTTGAGGTTTCGGTTGAAGAACCCTTCGAGGATGACTCTCCGGATTCCTCGTCATCTGAC TATGTTGTTTATCAGTCTGAACCCGTGGAAGAAGAGGCGTCTGAGTTCGACCTTGATAAGAGGCTTGGAGTTCCTCATCC ATTTGTTGATCCGAAAATCAAAAAGCCGATAGAGGGAACACTTACAAGTGAAGAACTGTGGTGGAATTGGAGGAAGCCAG AGAAAGAGCAATGGTCCAGATGGCAAAGGAGGAGACCTGATGTTGAAACGGTTAGTGTGCATGAAAATAGTTGTGGATTG TGTTTTGACTTTGCAATTAAGATGTGTTTGTGCGTGTGCATTCATTGGTTTTTTCTGATGAAAGACGATTTAAATCCAAA CTGTCCTTAATGGTTTGATCAAAAGTATTCCTTTAGATTGCTCTCTATTTGGTCCACCCCTCCTTAGAGATAGATCTTCT GCACATATGCCTAAACCACCTAAGACGAGACTCACCATCCTTTTTGCAATAGGTGCTACCCCGAATTTCACTTTAATGCT TTCTCTGCTATCGTGCCGTATGTGTCCACTCATCCCTACAACATGGAGCATACTTTCTTGTTATAGAACTTTTCCATGAA ATCATTTGTAGCAAGATACTCAGATGCTTCCAGCCCTGATGTTAGATACTATGATTTGTTAGATCATTTACAACAGAAAC TGGGCAAGTAAAGCCAATCAAATATGAGTCACAAATCCTATTATTGATAGTGAAGTCTTACGTCTTGTGCCTGAACTTCT TAATAATTTCAGGTTTTCCTGAAAGCCATGGCAGAAACTGGGCAAGTAAAGCTTTATGGTGAAGAGCCAACATTAACTGA ATGTGCTCTTTACCGAGCAAGGCGCCATCTTTATAAGGAAGAAAGGTATTGCGGATTATTATGCTCATGCGACATCTTTC CCAATGTCGTTAATGTAGTTGTTAACATCAAAGTTGTTCTCAATTTTTATCAACTTTCCAAAATTACTCATAACCCACTT TTCTTAATTTATGTCCATCATTAATGCATTTGAGATTGGAAGAAAGTCCAATTATATCAGGGTATTCTGGTAAAAAAATA ATCAATGCACCACAAACTTTAAGTTGGTTTTTATTAAAAAGACAAGTTATACCTCCCATTTGGTTATTATATAATAAGGA CTAGAGGGAGTACTTTAAAAAATCTCTGGCAGTCAATAATCAATTTACTCCTTTTATTTAACGAGTGGAAAGTTGAGTTT TGCGTCTTTGTCAAAGTGTATTTGTTGGGTGTGAGTGTTGTCAAAGAAAATGTAGTCGCCAAAGGGAAGACCCAACTTTT TAGCAAGTTATAGTTTCCAGGCTGCTCAGAAGTTAGGGATAGGAACGATTCTTCAAGCATGTGGATGCAAGCCTCTTTCA GGGGTATTTTTTAAAAATATAAAAAGATAGTTAGTTGTATTTTTTACAAACATTAAAAACCATATTTTCTGATTTTTGCA GGCTTCAGGCTGAGCAAGAGAGACTGGAAAGGATTGGTCCAATGGCATACTATTCAGAATGGGTAAAAGTATGGAAGGGA GACACATCTCGCGAAGCTATTCAGAAGCACTTTGAAGACACCGGTGAAGATGAAAATACTCAACTAATTGAAATGTTTTC CCACCAAACTGCCGAGGAGTATCGCATTATGATGGGAACTGATCTTCGTATTCCTAGGGATCCTTTAGCAATGCGAATGA GGGAGGATCAGATAAAGCAAAGTATTGACTTTAAAAATTAATATTTGTGTCATTTTGAGTCATCTTATGTCTTTTGGCCA TTTATCTTGCTTTTTAGGATTCTAGTATTAGTCAACTTCATATAGAATTGTTTGTCAAAGAACCATTTGACCTAAAAGTT TAAGCTATTAGATGAGGGCAGGATAATGAGTAATTGAAAAAAATTCTGTTCTTTCTTGCAGTATGGGGTGGAGATCCGGT TTACCCAACTGTGAACTATATTCAAGATCCAGATGTAGTGATTGACTTTAGGGGGCCAGATTTTCATGAACCGACACCAG ATATGTTAGCTTATCTGAAGGAGGTTGTTTGCTCTGACCCTCATCTTCTTTGTTTTCTATCATTTTTTTTCGCTCTTCGC TGCAAATTTTGATTGCTAAAGGGAGTAAATTGCTATAATTAACCTCTTTAGATTCTCCAGGATGGAGTGCTCTGGAGATT TTTGGGATAAATTTTGTCACCCTACTAATAATGTTCTTAAATCCGGCTTTATATCTATGTGCTATCCTGTTTCCAAAATA TAAGCTTGGTTGATCATTGACTATTATTTTTGTCCACCTCCTAACTTTACTATGATATCATATCATACGATCATGGTTCT AACATCTTAGGTATCTCAGCTCACCTTTACTCTCTAAATAAAAAAAAGTGAAAGGCAACTCCCCTTGCTGGTTTATAAGA TGTAAAGGTGGAACAATAGCTCTTAAATTCATTTACATTCTAGTCCTTTAAAATTATATGCTGCTTGTTGCTTTGCTTGT ATAAGGATAAATGCCAAGAACACATGACCTGCTTTCATAATTTTGTTGTTTTACATTTTTATCTTTAGCGTAGTGATGTA GTTACGGTAGCCAATTTTTTTTTTCCTCAAGTGAGTTTTTTCCCATTTCCTTTTCTATTGATTGTTGAAATTTTTCGATT TTCAGATGTATCATGCAAAGACCAATTTTTAACGATAATTTATTTATGAGAAAATTACTGAACTTTTTCCATTATGTGTT CAGCATGGAAAAATCATTTCAAGGGAGGAACTTGACAAGATTCTGGCAAAGGAAAAGAATGAACAAGTTGAGGTAAGAAA TCAATAAATATGAACTTCATAATACTAATAGTGATGATACAGATCGAATGAATTATTTTGCAAACAAATGACGTGCATAT AAATTGTTTTCTTGAACAAATGACGTGCATATAAATTGTTTTCTTGAATAGGTTTATTTCTTTATATGGTTTGCCTTAAA ATGGGTTTTGGAAACTGGAAAGTGAAATACACATTGGATTTTCAGGATTTACTGTGGTAGTTTTCCAGGTGCTAACCCTT TTGGATGTGGTCTACTGTTATTAAGATGTGAACGTGTCAGTTGCATGGCTGAAAGGTTTTATAGATAAGTGTCATTTGTT CTAGTAAATTTTGCAATTTTCTAGGTCCCTGTTATCCAAAAAGCCTTGGTGAATAAATCAAAGTATGATGTACTTTACAA ACATAAAAAGTTAAAATACAATAAAAGTGAAAGCTGAAACCTGAAGCTTTACCACCAAATAATGCTGTTGAGGGAGAAGA GGTTAGACCTTAGAAGTTCCTTTAGACCCAAAGCATTGGAAATAGAATTGACTATTTTTAACTGAGTTTAGTTCTCAGTT CTCACAGTGAGTGGCCAAATAAGCAACGCTTCATAAATTCAATGTCTATCAATAATGATGTGGTTGGAACTTGGAAACAC CAAGGAGTATCATTCACTTTTCTTTTTCTCAATACAAAGTACTAATTTTGCTTAATAGGCTGGAAATTATCACTCTATTA GGAATCCTGAATAGTTCACCATCTTTGTTGACACAGTTGAAGCATAAAGTGTAAAACAAAAATTCATGAAAATAGTTTGA CTTTCATTTGGTTTTCTGGCCTGGTCTCTTCAATCTGGTTGACTAATAACGGTAAAGAGCCATTTTAAGGTAAAGGTATA GAAGAGTAACTTTTCTCTTTAATATACCGACCGGTCATTTGATCCTTATTATTTTGTTTAAGGATAGATGTATGACCATT TTTTACTTTATAAAAAATTGTAGCATGTTTTGATAATACATTAACAGCAGAATTTTGGCGGAATTACTTAGTATATCTTG CCTGTGTTGATTTTTTTGCCTGAACTTTGTACTTCACTCAAGTGTTATGTTATGAAGCTTCATTGAACCTTTTATAACCC TTTCTTTCTGTTTGCGTCCTCCTTCTTCATTCAAATACTATCTTCTATCACCTGTCATGCTGTTATAGTTTGATGACCTT TATTTGCAATATGGCAGTTGACAGACATGGATGAAGCTATGGCCAAAGCCGTTGATATTGGTGAAAATGATGTGAGTTTC AGTTCACGTCTTTATAAGATTTCATTTACTCTTGTGACTGAACAATACCACCTTGTCTAAGGAGCTTCATTCCTTAATGA TTGGTAGTAAGATTTCTACCCCTTTTTATCTCTTTATTAACCAGGATGAAGAGGATAGTGAGCTTGATGAGGAAGAGGGA GATGGAGAGGAAGAGGAAGAGAAGATTGATCGTAAATGGAGTGTATTGAAAACTACTCCCCAGCCTCGCAAGTCAAAGGT ATTGTAAATCAGATATTTTCTTCTAGTTTTATTCCTACTAGTGTCATCTGTTTTCTTAATTCATAAGTAATCCATCCCTT CGTCTCCCTCCTTGAACATGCAGGCAAAACCCAAGAAAGATGGTCCTATGTCCCTGGAGGAAGCTGTAGACGATTCTGAA AACTTGACTGATTTCCTCTTGGACTTTGAAGAAGAAGAGTGAAATGCCTCTCCTTGCGAAGTGTAGACATGCACCTTATG TTGTAGACAGGATGAAAGGTTTGCATGTAAAGCATTGCTTATCAAATTTTTGAACCATTAGTAACATCATCTAGGCATTC CACAATGGTTAGGGTGGCTCAGGCAATAAATGTTGGAAAGAGATTACGAATTCTAGTAGCTCAAAAGTTATAGAAACATT AAGCCAGTCTTTAGTTCCCGTTTGTTTCCAAAACCTTCCTAGGTACACATTTCTGATATCTTGAGTCTTCTTCACACGGA ACTTAGCAGATATTTAAGTATATTGCTGCTCATTGTAATTTTGGTGCAAACTGAAACATGATATATTAAATATTAAATCA CATCTTCTTTCTCGCTATTATAGTGCTGCACCCAAATTCCTACAAGTTTGAAGCCATCAAATCTTATATTTATTTTGAGT CTATTTTAATTTCTTAGCATTTCTATATTTTTTCCATCCAAGCAGCAACATTTAAATATTTATTTCTATTTGATTTGTCT CCCTCTTTTTCACAAACACTGGCGAGAAAGTTGTTTTTTGCTTAATTATTTCATTTGATTATTTACTTTCCAGTTG
CDS sequence (LotjaGi6g1v0313200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCATTCAAGCCAATCTTGTTCCCAACTTGTCCTTCAACCATTTCCAGACACCATCATCATCATACCTGGTAGG TGTTGGTAATTTGCAATGTAGAGTTGGTTTCAGCAAGTCAAGGAGGAGGCTTCCTTCTCATATTTGTATAAAGTGTTGTG AAAAAAAGAAAGATGAATATACTGAGCTTGAGCATGTATCAGTTGAACGTCCACCCTATTACAGTTACATGGACTCCACC TCCGGTCAGCTTGAGCCGGCTTCCGGTGCTCGGTCCAGTCTTCCTGAAGAAGACTTATGGCCTGAAGGAACTGTTAATCA AGTCAGGGCTGGTAGAGCACCTCCTCCGACTGGTGAATCGTCAGGAACGCCGTCTTATGGAAGCAAGCCTGGGAGTAGGA GGAAGAAGGGCAGAACTTCTATTTCTGCTTCTTCTGATGATGGTTCTTCCTCTGAGGCTGTTGCTGAATCAACTGACACT GCGCTGCTTGAGGTTTCGGTTGAAGAACCCTTCGAGGATGACTCTCCGGATTCCTCGTCATCTGACTATGTTGTTTATCA GTCTGAACCCGTGGAAGAAGAGGCGTCTGAGTTCGACCTTGATAAGAGGCTTGGAGTTCCTCATCCATTTGTTGATCCGA AAATCAAAAAGCCGATAGAGGGAACACTTACAAGTGAAGAACTGTGGTGGAATTGGAGGAAGCCAGAGAAAGAGCAATGG TCCAGATGGCAAAGGAGGAGACCTGATGTTGAAACGGTTTTCCTGAAAGCCATGGCAGAAACTGGGCAAGTAAAGCTTTA TGGTGAAGAGCCAACATTAACTGAATGTGCTCTTTACCGAGCAAGGCGCCATCTTTATAAGGAAGAAAGGCTTCAGGCTG AGCAAGAGAGACTGGAAAGGATTGGTCCAATGGCATACTATTCAGAATGGGTAAAAGTATGGAAGGGAGACACATCTCGC GAAGCTATTCAGAAGCACTTTGAAGACACCGGTGAAGATGAAAATACTCAACTAATTGAAATGTTTTCCCACCAAACTGC CGAGGAGTATCGCATTATGATGGGAACTGATCTTCGTATTCCTAGGGATCCTTTAGCAATGCGAATGAGGGAGGATCAGA TAAAGCAAATATGGGGTGGAGATCCGGTTTACCCAACTGTGAACTATATTCAAGATCCAGATGTAGTGATTGACTTTAGG GGGCCAGATTTTCATGAACCGACACCAGATATGTTAGCTTATCTGAAGGAGCATGGAAAAATCATTTCAAGGGAGGAACT TGACAAGATTCTGGCAAAGGAAAAGAATGAACAAGTTGAGTTGACAGACATGGATGAAGCTATGGCCAAAGCCGTTGATA TTGGTGAAAATGATGATGAAGAGGATAGTGAGCTTGATGAGGAAGAGGGAGATGGAGAGGAAGAGGAAGAGAAGATTGAT CGTAAATGGAGTGTATTGAAAACTACTCCCCAGCCTCGCAAGTCAAAGGCAAAACCCAAGAAAGATGGTCCTATGTCCCT GGAGGAAGCTGTAGACGATTCTGAAAACTTGACTGATTTCCTCTTGGACTTTGAAGAAGAAGAGTGA
Protein sequence (LotjaGi6g1v0313200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASIQANLVPNLSFNHFQTPSSSYLVGVGNLQCRVGFSKSRRRLPSHICIKCCEKKKDEYTELEHVSVERPPYYSYMDST SGQLEPASGARSSLPEEDLWPEGTVNQVRAGRAPPPTGESSGTPSYGSKPGSRRKKGRTSISASSDDGSSSEAVAESTDT ALLEVSVEEPFEDDSPDSSSSDYVVYQSEPVEEEASEFDLDKRLGVPHPFVDPKIKKPIEGTLTSEELWWNWRKPEKEQW SRWQRRRPDVETVFLKAMAETGQVKLYGEEPTLTECALYRARRHLYKEERLQAEQERLERIGPMAYYSEWVKVWKGDTSR EAIQKHFEDTGEDENTQLIEMFSHQTAEEYRIMMGTDLRIPRDPLAMRMREDQIKQIWGGDPVYPTVNYIQDPDVVIDFR GPDFHEPTPDMLAYLKEHGKIISREELDKILAKEKNEQVELTDMDEAMAKAVDIGENDDEEDSELDEEEGDGEEEEEKID RKWSVLKTTPQPRKSKAKPKKDGPMSLEEAVDDSENLTDFLLDFEEEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 528 | 519 | 2.0E-254 | ||
| MobiDBLite | 77 | 200 | 124 | - | – | |
| MobiDBLite | 142 | 157 | 16 | - | – | |
| MobiDBLite | 454 | 528 | 75 | - | – | |
| MobiDBLite | 455 | 475 | 21 | - | – | |
| MobiDBLite | 512 | 528 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to light stimulus | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. | ||
| Cellular component | Chloroplast | A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. | ||
| Biological process | Positive regulation of red or far-red light signaling pathway | Any process that increases the rate, frequency or extent of the red or far-red signaling pathway, the series of molecular signals initiated upon sensing by photoreceptor molecules of red light or far red light. |
Expression pattern of LotjaGi6g1v0313200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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