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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0313200 |
| Transcript ID | LotjaGi6g1v0313200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein plastid transcriptionally active 12; TAIR: AT2G34640.1 plastid transcriptionally active 12; Swiss-Prot: sp|F4IHY7|PTA12_ARATH Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12; TrEMBL-Plants: tr|A0A067GIV8|A0A067GIV8_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0313200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63121071..63127144) extracted from Lotus japonicus Gifu genome v1.2.
CTTCAAAATGATAAGGGAAATGTCAGTGTAGCAGTAGCTTGATAAGAGACACAGCTGACTGTCTCACTCTCCGGCACTGC AAATTCTCTCCCTCCCTCTCTGCTTCTCCAACTTCACTCTGCACCACCATCTACGACGACGTTTCGATTTCTCATCCCCA CCCTCCCACCACACCACACCACACCACTACTGCAAAACTCAGGTTTCTACTTTCTAATCCGCTTTGGTTTTCTCTGAGGC GACAACTATGGCTTCCATTCAAGCCAATCTTGTTCCCAACTTGTCCTTCAACCATTTCCAGGTTAGCATAAAAGGGTGTT CAAAGTTCAATTTTTTACCATCTGGGTTGCTACCCTTTTCTTCCTTATCTGCATTTTGCATTCACATGAACTCACTCAAA AGCTAAAAAAATCCAATTTTGAAGTGGCTGAACTGAAAAAATTTACACTTTTCCTCTTATTTTCACATTTTGAAGTAATT TATTATGTTTTTATATTATGTAATTTGTTGCTAATTTATAGTATACAATGATTGAAACCCCGTAGACACCATCATCATCA TACCTGGTAGGTGTTGGTAATTTGCAATGTAGAGTTGGTTTCAGCAAGTCAAGGAGGAGGCTTCCTTCTCATATTTGTAT AAAGTGTTGTGAAAAAAAGAAAGATGAATATACTGAGCTTGAGCATGTATCAGTTGAACGTCCACCCTATTACAGTTACA TGGACTCCACCTCCGGTCAGCTTGAGCCGGCTTCCGGTGCTCGGTCCAGTCTTCCTGAAGAAGACTTATGGCCTGAAGGA ACTGTTAATCAAGTCAGGGCTGGTAGAGCACCTCCTCCGACTGGTGAATCGTCAGGAACGCCGTCTTATGGAAGCAAGCC TGGGAGTAGGAGGAAGAAGGGCAGAACTTCTATTTCTGCTTCTTCTGATGATGGTTCTTCCTCTGAGGCTGTTGCTGAAT CAACTGACACTGCGCTGCTTGAGGTTTCGGTTGAAGAACCCTTCGAGGATGACTCTCCGGATTCCTCGTCATCTGACTAT GTTGTTTATCAGTCTGAACCCGTGGAAGAAGAGGCGTCTGAGTTCGACCTTGATAAGAGGCTTGGAGTTCCTCATCCATT TGTTGATCCGAAAATCAAAAAGCCGATAGAGGGAACACTTACAAGTGAAGAACTGTGGTGGAATTGGAGGAAGCCAGAGA AAGAGCAATGGTCCAGATGGCAAAGGAGGAGACCTGATGTTGAAACGGTTAGTGTGCATGAAAATAGTTGTGGATTGTGT TTTGACTTTGCAATTAAGATGTGTTTGTGCGTGTGCATTCATTGGTTTTTTCTGATGAAAGACGATTTAAATCCAAACTG TCCTTAATGGTTTGATCAAAAGTATTCCTTTAGATTGCTCTCTATTTGGTCCACCCCTCCTTAGAGATAGATCTTCTGCA CATATGCCTAAACCACCTAAGACGAGACTCACCATCCTTTTTGCAATAGGTGCTACCCCGAATTTCACTTTAATGCTTTC TCTGCTATCGTGCCGTATGTGTCCACTCATCCCTACAACATGGAGCATACTTTCTTGTTATAGAACTTTTCCATGAAATC ATTTGTAGCAAGATACTCAGATGCTTCCAGCCCTGATGTTAGATACTATGATTTGTTAGATCATTTACAACAGAAACTGG GCAAGTAAAGCCAATCAAATATGAGTCACAAATCCTATTATTGATAGTGAAGTCTTACGTCTTGTGCCTGAACTTCTTAA TAATTTCAGGTTTTCCTGAAAGCCATGGCAGAAACTGGGCAAGTAAAGCTTTATGGTGAAGAGCCAACATTAACTGAATG TGCTCTTTACCGAGCAAGGCGCCATCTTTATAAGGAAGAAAGGTATTGCGGATTATTATGCTCATGCGACATCTTTCCCA ATGTCGTTAATGTAGTTGTTAACATCAAAGTTGTTCTCAATTTTTATCAACTTTCCAAAATTACTCATAACCCACTTTTC TTAATTTATGTCCATCATTAATGCATTTGAGATTGGAAGAAAGTCCAATTATATCAGGGTATTCTGGTAAAAAAATAATC AATGCACCACAAACTTTAAGTTGGTTTTTATTAAAAAGACAAGTTATACCTCCCATTTGGTTATTATATAATAAGGACTA GAGGGAGTACTTTAAAAAATCTCTGGCAGTCAATAATCAATTTACTCCTTTTATTTAACGAGTGGAAAGTTGAGTTTTGC GTCTTTGTCAAAGTGTATTTGTTGGGTGTGAGTGTTGTCAAAGAAAATGTAGTCGCCAAAGGGAAGACCCAACTTTTTAG CAAGTTATAGTTTCCAGGCTGCTCAGAAGTTAGGGATAGGAACGATTCTTCAAGCATGTGGATGCAAGCCTCTTTCAGGG GTATTTTTTAAAAATATAAAAAGATAGTTAGTTGTATTTTTTACAAACATTAAAAACCATATTTTCTGATTTTTGCAGGC TTCAGGCTGAGCAAGAGAGACTGGAAAGGATTGGTCCAATGGCATACTATTCAGAATGGGTAAAAGTATGGAAGGGAGAC ACATCTCGCGAAGCTATTCAGAAGCACTTTGAAGACACCGGTGAAGATGAAAATACTCAACTAATTGAAATGTTTTCCCA CCAAACTGCCGAGGAGTATCGCATTATGATGGGAACTGATCTTCGTATTCCTAGGGATCCTTTAGCAATGCGAATGAGGG AGGATCAGATAAAGCAAAGTATTGACTTTAAAAATTAATATTTGTGTCATTTTGAGTCATCTTATGTCTTTTGGCCATTT ATCTTGCTTTTTAGGATTCTAGTATTAGTCAACTTCATATAGAATTGTTTGTCAAAGAACCATTTGACCTAAAAGTTTAA GCTATTAGATGAGGGCAGGATAATGAGTAATTGAAAAAAATTCTGTTCTTTCTTGCAGTATGGGGTGGAGATCCGGTTTA CCCAACTGTGAACTATATTCAAGATCCAGATGTAGTGATTGACTTTAGGGGGCCAGATTTTCATGAACCGACACCAGATA TGTTAGCTTATCTGAAGGAGGTTGTTTGCTCTGACCCTCATCTTCTTTGTTTTCTATCATTTTTTTTCGCTCTTCGCTGC AAATTTTGATTGCTAAAGGGAGTAAATTGCTATAATTAACCTCTTTAGATTCTCCAGGATGGAGTGCTCTGGAGATTTTT GGGATAAATTTTGTCACCCTACTAATAATGTTCTTAAATCCGGCTTTATATCTATGTGCTATCCTGTTTCCAAAATATAA GCTTGGTTGATCATTGACTATTATTTTTGTCCACCTCCTAACTTTACTATGATATCATATCATACGATCATGGTTCTAAC ATCTTAGGTATCTCAGCTCACCTTTACTCTCTAAATAAAAAAAAGTGAAAGGCAACTCCCCTTGCTGGTTTATAAGATGT AAAGGTGGAACAATAGCTCTTAAATTCATTTACATTCTAGTCCTTTAAAATTATATGCTGCTTGTTGCTTTGCTTGTATA AGGATAAATGCCAAGAACACATGACCTGCTTTCATAATTTTGTTGTTTTACATTTTTATCTTTAGCGTAGTGATGTAGTT ACGGTAGCCAATTTTTTTTTTCCTCAAGTGAGTTTTTTCCCATTTCCTTTTCTATTGATTGTTGAAATTTTTCGATTTTC AGATGTATCATGCAAAGACCAATTTTTAACGATAATTTATTTATGAGAAAATTACTGAACTTTTTCCATTATGTGTTCAG CATGGAAAAATCATTTCAAGGGAGGAACTTGACAAGATTCTGGCAAAGGAAAAGAATGAACAAGTTGAGGTAAGAAATCA ATAAATATGAACTTCATAATACTAATAGTGATGATACAGATCGAATGAATTATTTTGCAAACAAATGACGTGCATATAAA TTGTTTTCTTGAACAAATGACGTGCATATAAATTGTTTTCTTGAATAGGTTTATTTCTTTATATGGTTTGCCTTAAAATG GGTTTTGGAAACTGGAAAGTGAAATACACATTGGATTTTCAGGATTTACTGTGGTAGTTTTCCAGGTGCTAACCCTTTTG GATGTGGTCTACTGTTATTAAGATGTGAACGTGTCAGTTGCATGGCTGAAAGGTTTTATAGATAAGTGTCATTTGTTCTA GTAAATTTTGCAATTTTCTAGGTCCCTGTTATCCAAAAAGCCTTGGTGAATAAATCAAAGTATGATGTACTTTACAAACA TAAAAAGTTAAAATACAATAAAAGTGAAAGCTGAAACCTGAAGCTTTACCACCAAATAATGCTGTTGAGGGAGAAGAGGT TAGACCTTAGAAGTTCCTTTAGACCCAAAGCATTGGAAATAGAATTGACTATTTTTAACTGAGTTTAGTTCTCAGTTCTC ACAGTGAGTGGCCAAATAAGCAACGCTTCATAAATTCAATGTCTATCAATAATGATGTGGTTGGAACTTGGAAACACCAA GGAGTATCATTCACTTTTCTTTTTCTCAATACAAAGTACTAATTTTGCTTAATAGGCTGGAAATTATCACTCTATTAGGA ATCCTGAATAGTTCACCATCTTTGTTGACACAGTTGAAGCATAAAGTGTAAAACAAAAATTCATGAAAATAGTTTGACTT TCATTTGGTTTTCTGGCCTGGTCTCTTCAATCTGGTTGACTAATAACGGTAAAGAGCCATTTTAAGGTAAAGGTATAGAA GAGTAACTTTTCTCTTTAATATACCGACCGGTCATTTGATCCTTATTATTTTGTTTAAGGATAGATGTATGACCATTTTT TACTTTATAAAAAATTGTAGCATGTTTTGATAATACATTAACAGCAGAATTTTGGCGGAATTACTTAGTATATCTTGCCT GTGTTGATTTTTTTGCCTGAACTTTGTACTTCACTCAAGTGTTATGTTATGAAGCTTCATTGAACCTTTTATAACCCTTT CTTTCTGTTTGCGTCCTCCTTCTTCATTCAAATACTATCTTCTATCACCTGTCATGCTGTTATAGTTTGATGACCTTTAT TTGCAATATGGCAGTTGACAGACATGGATGAAGCTATGGCCAAAGCCGTTGATATTGGTGAAAATGATGTGAGTTTCAGT TCACGTCTTTATAAGATTTCATTTACTCTTGTGACTGAACAATACCACCTTGTCTAAGGAGCTTCATTCCTTAATGATTG GTAGTAAGATTTCTACCCCTTTTTATCTCTTTATTAACCAGGATGAAGAGGATAGTGAGCTTGATGAGGAAGAGGGAGAT GGAGAGGAAGAGGAAGAGAAGATTGATCGTAAATGGAGTGTATTGAAAACTACTCCCCAGCCTCGCAAGTCAAAGGTATT GTAAATCAGATATTTTCTTCTAGTTTTATTCCTACTAGTGTCATCTGTTTTCTTAATTCATAAGTAATCCATCCCTTCGT CTCCCTCCTTGAACATGCAGGCAAAACCCAAGAAAGATGGTCCTATGTCCCTGGAGGAAGCTGTAGACGATTCTGAAAAC TTGACTGATTTCCTCTTGGACTTTGAAGAAGAAGAGTGAAATGCCTCTCCTTGCGAAGTGTAGACATGCACCTTATGTTG TAGACAGGATGAAAGGTTTGCATGTAAAGCATTGCTTATCAAATTTTTGAACCATTAGTAACATCATCTAGGCATTCCAC AATGGTTAGGGTGGCTCAGGCAATAAATGTTGGAAAGAGATTACGAATTCTAGTAGCTCAAAAGTTATAGAAACATTAAG CCAGTCTTTAGTTCCCGTTTGTTTCCAAAACCTTCCTAGGTACACATTTCTGATATCTTGAGTCTTCTTCACACGGAACT TAGCAGATATTTAAGTATATTGCTGCTCATTGTAATTTTGGTGCAAACTGAAACATGATATATTAAATATTAAATCACAT CTTCTTTCTCGCTATTATAGTGCTGCACCCAAATTCCTACAAGTTTGAAGCCATCAAATCTTATATTTATTTTGAGTCTA TTTTAATTTCTTAGCATTTCTATATTTTTTCCATCCAAGCAGCAACATTTAAATATTTATTTCTATTTGATTTG
CDS sequence (LotjaGi6g1v0313200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCCACCTCCGGTCAGCTTGAGCCGGCTTCCGGTGCTCGGTCCAGTCTTCCTGAAGAAGACTTATGGCCTGAAGG AACTGTTAATCAAGTCAGGGCTGGTAGAGCACCTCCTCCGACTGGTGAATCGTCAGGAACGCCGTCTTATGGAAGCAAGC CTGGGAGTAGGAGGAAGAAGGGCAGAACTTCTATTTCTGCTTCTTCTGATGATGGTTCTTCCTCTGAGGCTGTTGCTGAA TCAACTGACACTGCGCTGCTTGAGGTTTCGGTTGAAGAACCCTTCGAGGATGACTCTCCGGATTCCTCGTCATCTGACTA TGTTGTTTATCAGTCTGAACCCGTGGAAGAAGAGGCGTCTGAGTTCGACCTTGATAAGAGGCTTGGAGTTCCTCATCCAT TTGTTGATCCGAAAATCAAAAAGCCGATAGAGGGAACACTTACAAGTGAAGAACTGTGGTGGAATTGGAGGAAGCCAGAG AAAGAGCAATGGTCCAGATGGCAAAGGAGGAGACCTGATGTTGAAACGGTTTTCCTGAAAGCCATGGCAGAAACTGGGCA AGTAAAGCTTTATGGTGAAGAGCCAACATTAACTGAATGTGCTCTTTACCGAGCAAGGCGCCATCTTTATAAGGAAGAAA GGCTTCAGGCTGAGCAAGAGAGACTGGAAAGGATTGGTCCAATGGCATACTATTCAGAATGGGTAAAAGTATGGAAGGGA GACACATCTCGCGAAGCTATTCAGAAGCACTTTGAAGACACCGGTGAAGATGAAAATACTCAACTAATTGAAATGTTTTC CCACCAAACTGCCGAGGAGTATCGCATTATGATGGGAACTGATCTTCGTATTCCTAGGGATCCTTTAGCAATGCGAATGA GGGAGGATCAGATAAAGCAAATATGGGGTGGAGATCCGGTTTACCCAACTGTGAACTATATTCAAGATCCAGATGTAGTG ATTGACTTTAGGGGGCCAGATTTTCATGAACCGACACCAGATATGTTAGCTTATCTGAAGGAGCATGGAAAAATCATTTC AAGGGAGGAACTTGACAAGATTCTGGCAAAGGAAAAGAATGAACAAGTTGAGTTGACAGACATGGATGAAGCTATGGCCA AAGCCGTTGATATTGGTGAAAATGATGATGAAGAGGATAGTGAGCTTGATGAGGAAGAGGGAGATGGAGAGGAAGAGGAA GAGAAGATTGATCGTAAATGGAGTGTATTGAAAACTACTCCCCAGCCTCGCAAGTCAAAGGCAAAACCCAAGAAAGATGG TCCTATGTCCCTGGAGGAAGCTGTAGACGATTCTGAAAACTTGACTGATTTCCTCTTGGACTTTGAAGAAGAAGAGTGA
Protein sequence (LotjaGi6g1v0313200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSTSGQLEPASGARSSLPEEDLWPEGTVNQVRAGRAPPPTGESSGTPSYGSKPGSRRKKGRTSISASSDDGSSSEAVAE STDTALLEVSVEEPFEDDSPDSSSSDYVVYQSEPVEEEASEFDLDKRLGVPHPFVDPKIKKPIEGTLTSEELWWNWRKPE KEQWSRWQRRRPDVETVFLKAMAETGQVKLYGEEPTLTECALYRARRHLYKEERLQAEQERLERIGPMAYYSEWVKVWKG DTSREAIQKHFEDTGEDENTQLIEMFSHQTAEEYRIMMGTDLRIPRDPLAMRMREDQIKQIWGGDPVYPTVNYIQDPDVV IDFRGPDFHEPTPDMLAYLKEHGKIISREELDKILAKEKNEQVELTDMDEAMAKAVDIGENDDEEDSELDEEEGDGEEEE EKIDRKWSVLKTTPQPRKSKAKPKKDGPMSLEEAVDDSENLTDFLLDFEEEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 124 | 124 | - | – | |
| PANTHER | 1 | 452 | 452 | 2.5E-237 | ||
| MobiDBLite | 66 | 81 | 16 | - | – | |
| MobiDBLite | 378 | 452 | 75 | - | – | |
| MobiDBLite | 379 | 399 | 21 | - | – | |
| MobiDBLite | 436 | 452 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to light stimulus | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. | ||
| Cellular component | Chloroplast | A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. | ||
| Biological process | Positive regulation of red or far-red light signaling pathway | Any process that increases the rate, frequency or extent of the red or far-red signaling pathway, the series of molecular signals initiated upon sensing by photoreceptor molecules of red light or far red light. |
Expression pattern of LotjaGi6g1v0313200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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