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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0314600 |
Transcript ID | LotjaGi6g1v0314600.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | senescence regulator (Protein of unknown function, DUF584); TAIR: AT1G29640.1 senescence regulator (Protein of unknown function, DUF584); Swiss-Prot: sp|O49292|PPD4_ARATH PsbP domain-containing protein 4, chloroplastic; TrEMBL-Plants: tr|D7KDV9|D7KDV9_ARALL Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0314600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63275571..63277974) extracted from Lotus japonicus Gifu genome v1.2.
TACAAGTTAATTACAAGAAAAGAAAATACATAAATCAAATCAATGCACTAATTGTTAGAATAAACTGCTCCCGGATAAAA ACTAATCCACTCATGAATCATGTTTCAACAGCTAATATTCAGTACATATTAACTTGTGAATTCGAAAAGAGAAACTGTCT TAACTCGTGAACTGTATCATTCTTGGTCCGTAGCAGATAAAGCCAGACCGTGACGATAGGACTGGGACCCAGGTGAATGG TGAAAAATATCAAGAACTCGAGAAAAGAGAAACTGTCTTAACTCGTGAACTGTATTTTTCTTGGTCTGTAGCGTAGATAA AGCCAGACCGTGACGATAGGCGTGGGACCCAGGTGAATGGTGAAAAATATCATGAACTCGAGAAAAGAAAAACGGTCTTA ACTCGTGAACTGTATTTTTCTTGGTCTGTAGCGCAGATAAAGCCAGACCGTGACGATAGGCATGGGACCCAGGTGAATAG TGAAAACCATGGGAGGTGGTTTTATTGACAAAAAGGGACCGACTAAAGAGAGAAGAAGGGTGAAGGAGGGAGGGGCATGG TAGAATTGAGAGATGAGAAAAAGAAAGCAGGGACCGCACTCAATGTCCTTACAATGACGCAATCTGACAACACACAAAAA GTTTACTCAGTACGCTTCTTTTTCATGATCTATAAATTAAACCCCCAAACCTTTCACTGTTTCATTCCCAACACCAACAA CAACAGCAACAACATTAAGAACATTTCTGTTCATCTTTCAATAGTACATGTCTGTCTCTGACAACTTGAACCTGATTAAC CAAATGGCAGAGGACGAGGAGTTCTCTGAATCCGAGGTTGTTTTCTCTGACCACCATGACAACAACAACAACCACAACCT TCCCATTGCGGAGGTCGAAGACGATGACGCCGAGGAGAGCAAGGATTCTGAGGAGGAGAAGAAGGACTCTGTGGAGGAGA AGAAGAGGGCTGCGAGGGTGAGCTCGATGCCGGTGAACATTCCTCAGGCGAAGGTGCAGCGCTGGGATTCAGATGAGTCG GAGGAGATGGAGCCGCCGCATGTGATCGTGGGGCGGAGGGTCGCCGGGAAAATGGCATTCTCTGTGTACACCGGGAACGG GAGGACTTTGAAGGGGAGGGACTTGAGGCGTGTCAGGAACTCCATTCTGAGGTTGACTGGGTTTATTGAAGCTTGACTGG TTCTGCACATTGGTACTTCTATGACAGCGTGTTTGGTTGATCAGAAAATTGGCATGAAAGGGAAAGAGAAATTGTCTTCC TTCCTTAGTTTCTCTTAGATTATTATTGCTTTCTTTTCTATTAGTTTTAATTTTTGAGATCTTTTTCTAGTCTCATCATC GATATGTAACAGAGAGAAAATATTAGAGAAACTGCAGAGAGAGCATTTGAAGATAGGAAATGAAATGAATTTGATTTGCC TTTTTAATTGAATTTAGTGTTTGATTCATCTTGTAAATATATTCTGGGTTCTTTGATTGTGTTGATTGTTTCATTGCTGG ATCAAGCAGCTTTCCAGTTCGGAGATTCTGGGTGGCAGCTTCTGCCATGTTCAAACTTCAAAGGTATGTGCAGTGCACAC AATGCTGGGACTTGGCAGCTTCTGCGCGTCATCAGTTAATTGTGTGTTTGTATTTTTTTCAGCGTACATTTCACACAGTT GAATGTGTCTTTTTTTTTTTTTTTTTCAGTTTATGCTCTTTTGTCATTATTGGGGCGTGTGCATGAATCTTCTTCGTTCA GCCCACCTGATCGTAAATACAAACACACATTAAAGATTGCTTGCTTTTGGTGTCACATTTCTTCTGCTTCACACATGAAT GATTAATTGTGTTTTGTATTTTTCTCAGTGCACATTTTACACAGTTGAATGTGTCTTCTTTTCCAGTTCATGCTCTTTTA TCATTATTGGGGCGCGTCTATGAATCTTCTTCGTTCAGCGCACCTGATCGTAAATACAAACACACATTAAAGATTGCTTG ATTTTGTTGTCACATTTCTTTTGCTTCACACATTAAGGATTAATTGTGTTTTGTATTTTTCTCAGTGCACATTTTACACA GTTGAATGTGTCTTCTTTTCCAGTTCATGCTCTTTTATCATTATTGGGGCGCGTCTATGAATCTTCTTCGTTCAGCGCAC CTGATCGTAAATACAAACACACATTAAAGATTGCTTGATTTTGGTGTCACATTTCTTTTGCTTCACACATTAAGGATTAA TTGTGTTTTGTATTTTTCTCAGTGCACATTTTACACAGTTGAATGTGTCTTCTTTTCCAGTTCATGCTCTTTTGTCATTA TTGAGGCGCGTGCATGAATCTTCTTCGTTCAGCCCACCTGATCGTAAATACTAACACACATTAAGGACTGCTTGCTTTAA TTTG
CDS sequence (LotjaGi6g1v0314600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGTCTCTGACAACTTGAACCTGATTAACCAAATGGCAGAGGACGAGGAGTTCTCTGAATCCGAGGTTGTTTTCTC TGACCACCATGACAACAACAACAACCACAACCTTCCCATTGCGGAGGTCGAAGACGATGACGCCGAGGAGAGCAAGGATT CTGAGGAGGAGAAGAAGGACTCTGTGGAGGAGAAGAAGAGGGCTGCGAGGGTGAGCTCGATGCCGGTGAACATTCCTCAG GCGAAGGTGCAGCGCTGGGATTCAGATGAGTCGGAGGAGATGGAGCCGCCGCATGTGATCGTGGGGCGGAGGGTCGCCGG GAAAATGGCATTCTCTGTGTACACCGGGAACGGGAGGACTTTGAAGGGGAGGGACTTGAGGCGTGTCAGGAACTCCATTC TGAGGTTGACTGGGTTTATTGAAGCTTGA
Protein sequence (LotjaGi6g1v0314600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVSDNLNLINQMAEDEEFSESEVVFSDHHDNNNNHNLPIAEVEDDDAEESKDSEEEKKDSVEEKKRAARVSSMPVNIPQ AKVQRWDSDESEEMEPPHVIVGRRVAGKMAFSVYTGNGRTLKGRDLRRVRNSILRLTGFIEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 15 | 15 | - | – | |
MobiDBLite | 1 | 95 | 95 | - | – | |
PANTHER | 13 | 141 | 129 | 3.4E-40 | – | |
PANTHER | 13 | 141 | 129 | 3.4E-40 | – | |
Pfam | 22 | 141 | 120 | 9.7E-25 | ||
Coils | 45 | 72 | 28 | - | – | |
MobiDBLite | 54 | 70 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0314600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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