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LotjaGi6g1v0315800.1

Overview

Field Value
Gene ID LotjaGi6g1v0315800
Transcript ID LotjaGi6g1v0315800.1
Lotus japonicus genome version Gifu v1.2
Description Agamous MADS-box transcription factor; TAIR: AT4G18960.1 K-box region and MADS-box transcription factor family protein; Swiss-Prot: sp|Q40168|AG_SOLLC Floral homeotic protein AGAMOUS; TrEMBL-Plants: tr|Q533S1|Q533S1_LOTJA MADS box protein AGa; Found in the gene: LotjaGi6g1v0315800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:63354247..63363447) extracted from Lotus japonicus Gifu genome v1.2.

ATTCATACCACTAAACTGATTAGAGGTGAAAAAAATAAAAAACCAAAAACAAAAAACAAAAAAATTAATAAAATATAGAG ATGATGGCAGATGAGAGTATATGTAGTAGTTTCTGATGCATAAACCATGATGGATGAAAGGTCGTTTTACTACTTTATAA ATACCCAATTCCTTCCTTGGCCACTTTGCTTTTGTTTTCTGATTGATATATCTCCTTCCCTTCCTGTTCTAATAAGTAGA AAAGAAAAACACCAAGAGCTGAACACACCTGTTGTATCCTTAATTATATTCTCCTTTTGTTTCCTCACCAGGTTAGTGAG CAAAATACTGAAACCACCATTTCAAATCCATTCTCACTGCTTCATCTCTTTTGGGTCAATCAAACTTTTTCCACTTCAAA CCCAGATTTAGCAACACAACCCCCCTAAGATTGCACACTATATTACTAGCTAGTAAATGAAATTTTTTATGCTAATGATG TAAATGTTGGGGAGTTAGGGGTAAAGAGGCTGTAGTGAAGATTCCAACTTTAGATTTTTTTCTTCCCCTTTTGATATTCT CCCTAATCAGACCAAGCTAGCTGAAAGACCATGATTTTTTTTATGATTGTTTAACCTGATATGTATTATGTAATATATGT TTGTCATATTGTTCCTGATAAAATATATTGATTGTGTTTGTTTCAATTGATTCAGCTTGCTTGCAGCAATGGATTTCCCA AACCAATCCATGTCAGATTCTCCACAGAGAAAGCTGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACCACCAA TCGCCAAGTCACTTTCTGCAAGCGCAGAAATGGCCTTCTTAAGAAAGCTTATGAGCTATCTGTGCTTTGTGATGCAGAGG TTGCTTTGATTGTCTTCTCTAGCCGCGGTCGCCTCTATGAATATGCTAATAACAGGTATATACTTTCTAAACAATCAAGG ATTTCAATTTTTCTGTGTTCTTATTTTCATGGTTTTTTTCTTCATCATCATATTCCTCATCTCAGAAGTCCTTTTGAGAA TTTTTTATATTTTTTATGTGAAGTTTTGAGATGGTTCTATGTCTATTTGGGGATTTGGGGTTTAGATTTTTGGTCCTGCA AATAGATCTTTGGAAGGATTTGAGCACAAAGAACATAATCATTTTTTTGTGATGTAGTACTTGAGAGTTGAGATAGAGTT TTTCCTCTTTCTATCTCTGTTTTCTGAGACCAAGTATCACTTGTCTTTCTTCACTTCCACTTTGGTTTTTTCCATGTATG AGGTTTGTCTTGATAAAAATTTTCTAGTTCTTGGTTTTGTTGGAAATATATAAACATAGATCTGGTGTTGCAATAGATAG AAATAGAAGCACTAGCAACAGGCAAGGATTTGGGAAGTTATGCAGCAGGCCTGTGAGATCAGCCACTACTTCCCCCAACT TCACTCTTCCATCCATTTTCTTGTTAATTTTTGGGTTTCCCATTTCCTCTTTCCTTTTCTATTATTCTCATCTTCTCTCT CTTACACAACTGTTAAGGTAAGCTAAGAAGGCCTAAAGCTAAAGCTGTCATGTGCTCCAAATTAGCCCAACCCTTCCCAT CTCCTTATTGACACTTCCTTAATAACACGTCAGTTAGACATCAAGAAAGCACAGTAGTACAATTTTCAAGCAACTTGTCA AACATGTCAAATTGAAATAATTTTTTTTTTTTGGATCTTTACTCTTTAGGGTTTGTAAAAAGCCCAAAACTAGTTTTCAT CAGATTATGCAGAATTAAACCAAATCAGCTCAGGGACACTCATACCCAGATAAAGATTTTCCATTATTCCAAATACCTAA ACCAAAGTTTCCCCAAATTTCACTCACACCCACGTGCAAGATCTCAAGCCAAGGTCAAACCTAACCCTAAGAATTAGGGC TTTATTAGCAAAAACAACAACTAATAAAGTTTTAGAAAGTTAACACTTTCCTTTTCTTTTGAGCCAAACAGGAACATGAA AATAGTCAAAATGGTGTGAAAGTTTCAATTTTTTTGGTTGATTTCACCCCCCTTTTAGGAAATGAGGGTTCTGTGAATCT GGTTAGGGTTTTAAGGACTAGTCTAGGATTTGTCTTGGTTGAAAAGAATCTTTGGTCATGTCACACATGATTTTTCAGTT CTTGACTTCTGACAAAAGAGTGAATTCATGTCATGATTCCCATACTTGGCTCTCTTTCCCTCTTCCATCCAAACCCTAAA TTTTATCTCCTATAGTCCAAACACCCCAACTCTGGGAAAATTTCCCCTCTTTCCCTTGTTTCCCCCCAAATTCTCTCTTA TATGTATTCAAAGAGTAATAAAAAAATTCATTCTTTTTACATTGACATAGCTTCAGAAACAACAAAAAAGACAGTGAAAT AAGTGAAGAGCCAATGAGATTGCTCAACACTACTGTTGGTATCTCAGACTGGGATTTGCTCTTGCTCAATAGCTTGCACT GTCAAATTTGTGAAAGAAAAGAAAAAGAAAAAGGGTTTCAATGAGAGAGAGTAAAGAGTGAAGTGATGAGTGAGGTAAAT GGTGGCAGAGACAAACGTACGATAATTAAGGTAGCCAATGGGAGAGTTCTAATCTGAATAAATATTTGGCTTCTTCCATG CAATGGGAAGCGTAAAAACTATTGCTGTTTCTGCTTCTTCTGCTGTCTGAAATGGACGGCTGTGATGTTCACAGACTTTC AGACACAAAGAAAAGAGCACAAAAATATAATCTTTTTTTTATGAGTGAACAGTTGAATTGATACCTAAAGTGTTGAGTAC TAACAAGTTCGTCTTTATCTTAACAAGTTCATCCTTATAAGAAAGAAATAGTTCTTCCATTTTACGCAATCAGGGACCCC GTGAGTACTTCTTTAAGGCGAGACGAACTTGTTAGGATATAACACTTTTGGAGACCAATTTAACCATTTATTTTTTTTTA TACATTTATATCATTCTTAAAAGTTAAAAAGCTTGAGATATTTGAGTGTTATGTGGGTACATTCGAGGTGGGTATTTCAA TGAGGCTGAAGGGTATTAACCACAGTGAAATGGGTTTGTGCCAAGTGGCAGGGTGAAAAATAGCTCTAGAAATAGTTGAA CCAATCATGTAGTGGGATTCCGTGCCAGCGTGGCAGGGGCAGCCAATCACTGCCTCGAGGAAATTAAGGTATCAGAAAAG CAAAAATGGTTTTTTCCTTAAATTCTTTTTTGGATATTCAAAATATTATTATTATTATTATATTTTGAATCACATCAAGT CAGATTTTGTTGATGGGATGAGTTAGACTTTCATGAGATCATTTGATGTTGCTTTTTTAAGAGTTGCGTTTAAGGTTCAG TTAACTGAGAGAGTTGGATGATTTGACCATCAACTAGGTTCAGCTTAATTTCTGGTTAATCTTCAATGTGTCATGTTTAA TTTCAGATTAAATTGAACACTAAATCATTTAATGCATTCATCCAAACTTGCTATTTCATTCTATATGTAGATGGGTCTAG TCCTCCTACTCAACCAGGAAATGAAAGATGTTTGTTTCATGTCTACGTAAGCCTTGACGACTACCGTCAAAAAACAGTGA AGAATTAATAAACACAGTAAAATGAAATTTGGCACTGTAGTAAGTGTTAAATTGTAAAAGTTTTGTACATAATTGAGGGA AATTGGGAAAAGATAAATGCCATGAAAGTAGATGATATGACTACTTTCAGATTTGATTTCAATGGTATTATACTCATTTG TTGATGGAAGTACCCATCAATTACTAATTGCACTTTTGGGCAATTAGTTTTCACTTATGTGATTTCGGTACCATTATTTT TCTAGTAAATTAAGAGTACTTGCAGTTTTAAAAATAAACGCCTTTACATATTTATTTTCTATTCAAATATTTTGGTGGTT TTGAGTGAAAGAAGATTTTTAGTGATGTAATCAAAATAATTTCAGAATAATTTATTTAAGAAATTAGAATTTGAGAGTTT TAAGTGGAACAAAAGTGATTAGGTGCTTCATTGTAATAATTTTAAAATTTGAGGAACTAGATTTGCTAAAAATTTATAGA TGACTAAAATTATGCATCCTTTATCTAAAGTAGAGTGACCAAAAATGCAATTAACCATATTATATAATATTTTTTATAAT GTTTTTTTTTGAACGTATTTTTTTTATAATGTTATTTGATTTAATTTACTAAAGTTAGTCTTCTATTACTAGTGATTCTT TTTTTTTGTAAAAACACAAATTATTTGATATACTCAGTTCAAGAAATAAAAGTTTTATTGGACTTTGATTACTAGATTGA ACACTTCTTAGGATGATTTTTTCAAATCATTTTGATTTCAATTGTACGGAACTGTCAAATACATAGCTTGATACTTGTAG ACAAATTGGGAATTTTGAACTGACTTCTTTTCTCATTTTTGTTCATTTCTGAACAATATCTTGTTGCGTATGAAACAATG CAAAGCTCCAAGAGTAGACATGCTGACCTCAGGACATGATGTGAAATTTTATTTTTCTACAAATCCACCTCCAATTACAT AAGTCTTCTGGATTTATAGGATAAACCAATGTTCTATAAATGGAACTAAGATTTTGAAAATATAAAATTAATAGATTATT TAAGATGATAAGTTTGAATGTAAAATTCAATTTGACATTTTTGTTGTCTGTTCTATCTTTTCCTTCACCCATATATGGGA AAATCACAGCTTTCCAACCTCTTCAATTTTTTCCCTTCAATACAATCATGAGATTAATATAATAAGAGTGGCATTGCAAC CTAGTACCCAGTAAGTTGGAGTTGAATCAGTTAACTACTTCTCTGTGCAGTTTGAATTAGGTTTTGATGAATTGTTTGAA GTAGGCTTTGATGAATTCTTTACTAACAAAATTCAACTGAATTGCTTAACAATCACATAGAACCTTCATATGTTGAACAT TCCAATGCATTCCATTGGGTGAATGTACGCTGAAAATCATGATCTTAATTTGTGAGGTATTAAATGTTATTTTGAACTGA AAACCAAACAAATAATTAAGAGTTCAATTAGAGTATATATAACTAGGTTACCTTTAAAATTAAAGTTTCTCTCTAATATT TGAGAGAGTTTCATTGATGCATACACAAAGATATTCAAGGGGTATATACACTTGAAATTACTGGTATTGATTTGAGGCTT AGCTTATAGCACTTGAAAATTAAAAAGATACAATTTTAGGTCTGACTATCTCAAACTTTCTATTCTTCCATCCTATGTTT AACTATATGTTGTAATGTTTCATGAGAAACCATATTACTTGAGAAGCAATTATGGTGATAGTTAGACTATACATAAGGTT GTGAGTACTAAACAAATGAGATGTATTATGTACTTCTAAGAATGTTTCAGCTCTGTCAGGCTCTTGAAGATTTTAATAAG ACAGTAAAACCAATTTTCATCTCCTTTTGTTTGCATTTTAATGTTCTACTTGCAATTGTTATTTTACATAATAACTTACA AGCCCTTGTAAGTTGCTTATCCACTTAGCTTGCTAACATCCAATAAACTCTAATTTCAAGTTATTCTTTTAATCATTGCA GTGTCAAAGCAACAATTGATAGGTACAAGAAAGCATGTTCAGATTCATCTGGGGCTGGATCTGCTTCTGAGGCTAATGCT CAGGTATATTGCTTCATTATTTTATATTTCTTCAAGTCACAGTGTTGGAAAAAAGGTTAAAAGTCTTACATTGATGGACA AAGAAGACATATGAATATAAATCATAGAAGAATAAGTACATAAATCCTAAGGGGTATTGGAAAACAAGTAAAAGAGAAAA GTCACAAAAGTAACAACTGGATCAAACTAATCTAATTAGACTTGAGGGGAGTATTAGAAAAAGTAAGAGATCGCACTTGT TGATTAAAGATAAACTATAGGTGCACAAGTACAGAAAGCCTTAAACCATTTTGGATTAGCACCCTTAGATGATAAAGATT AGAAAAGTCATAAAGTACTCTCTCACACCCACAGCTATAAACTAATTTGGGCTATCTAATGAAAAAAAATTAGCAAATAG ATTGAGTACATCAATTTAACCATTGGTCAAAGTGTTTTAGCACCTAACTTACATTTATAGATAGAAATATTTGATTTAAT TTTATTATTTAAAGTAAGACTTACATCAATGATGTCATGAATCATCATCAGTTTTATCAGCAAGAGGCAGACAAACTGCG TGTGCAAATTAGTAACCTGCAGAATAACAACAGGCAAGTTGAAGAGATTTCACTTTTCAATTTGTTTTTAACTGGTATTA TCTGAGCATGGTTGCTGAAAAAGTAAATAATAAAGTGCAGGCAAATGATGGGTGAGTCTTTGGGCTCTATGAATGCCAAG GAACTCAAAAACCTGGAGACTAAGTTAGAAAAAGGAATTAGTAGGATTCGTTCCAAAAAGGTATGTCATGTTGTGAAAAT ATCTTTCTATAATTGGCTGGTAAATCTTGCATTTTACTGACTTTGTCCTTCTTGCTTGTGCTACATCCCAAACATCAACA TCAGAATGAGCTACTATTTGCTGAAATTGAGTACATGCAGAAAAGGGTAAGTATTTTCCTTGTATTCATGTTTTTATTTT TATTTTTCAAGTTTTATTTTTGAATGTATTTGTCTTTAGTCAGTATAAGGGGACTTGTTTGGTCCTGAGTTATCAATGGT TATGAAAGGTGAACAAGAATATCATAATTTAGCATGTGATTGTGTTCTAATTTTGGCTCAAAAAGTTGCAGTTTCAGTGA GATCTTCTTGTGTACAATGGACATCTTCAATTGTGGTGCTACATTCTGTTTGTTTGTGTTGGAAAAAGTAGAAAAACTCA CATCAATGAGAAAAGAAGAAATATAAGACAAAATAAGCTAGAATCATAAGTGAATATAAGTTTGAAATAAAGACACTTTG TGTGTTTGGATGGAGCATTTGTAAAGGATGATGTAATTTTTGGAGGAATTTAAAATGCACTTTGTTAAATTCAAACACAA TGAATTTAACATTCCTCCAGAAGTTACGTTATTTTCTACAAATGCTCAATCCAAGCACACTATAAGATATTTTGAACAAA CTAGCATAATAAAACCTCCAAAGTAAATTACATTTACACAATTAAGAGTATATTTGGATACCAGTTGATCATAACAAACT TTCATCTTATTTCATATACAAAATTTCATTTATTTTTTATCTTGAGATGCGTGATAATGTTGTTTATATTGACACCAACT GATATGTAAACATAATACTATAATCTAACTACTTATAGAAAGTTTTGAATACCCACTATTGCTTCCAATGTATCATAACT TTAATGAACAATGCAGGAGATAGACTTGCACAATAACAACCAGCTTCTTCGGGCAAAGGTGTGTCTTTATCTTAATTTAT GTTGTTTCTCTCACATAAATGTGCAATGTTGGTAATGTTATGATTCATTTGGGGGGTGTAGATAGCTGAAAGTGAGAGGA ACCACCCTAACTTGAGCATTTTGGCTGGGAGCACCTCAAACTATGAGTCTATGCAATCTCAGCAGCAGCAACAGCAGCAG CAATTCGACTCTCGCGGCTACTTCCAAGTCACTGGATTACAACCCACTACACATACTCAGTATTCGCGCCAAGACCAGAT CTCATTACAACCCAGTAGTCAGTATGCACGCCAAGACCACATGTCCCTTCAATTAGTGTAAGCATATCATCATCCCTTAT CATCATTCAAATTCATACTACAAATTATTTGAGAAAATTTTTTTAGGGCTTATACAATAAAGATATTCAATCTAACAAGT GTTTTTTTTTCCTTCTACTCTTGTGCAGGTAATGTGTTTGCGGTTGAGAAGTACTAAGACTTGTAGTTTGCAATTTAGTA TTATAGCAGCAGATGAATGCTAAGGTTAATATATATATAATTTAAGCAGAACTATGTGGAGGGAATTTAAATGTAAGTGT TCCCTCAGTACTGAGTAGTTGCTTAATTTGTAGACGTTTCATAAGAGTACTCTATCCTGTATCTATATTGAAACGCTCCC TGATATGTTTAGTACTGTGTTCTATGATTATGGAAAACACGAGACACCTTGACATGTTGTTTTGCAAGTTTGTTCACAAG TGAATGAAAATTGCAAAATATGTTATGGCCTTTATTGGTGGAGTGGAGGGTATAAATTTGCTATTGCTATACACACACAT ATATACTCCAGCTAAACATGAGGTTTGATATAAACTGTACAAGGCAAACTATTACAATAACTAGTACTATTTACACAAAA AATCTTTGGGGTTACCAAAAAGGATCTCATGAGTAGATTAAAATGTCATCTTTTCGCCTGGTATGGATGGCAAAACTCTC CCTACCAAGTGTTTAATGCAGTTGCATTCATATGGGATTCAAACTCGAGACCTCAGCTGAAACTAGAATATGCCCTTGCT AATCTAATGGATGAGATTAATTAATTTGCATGTTTTTTCTCACAACTTGGCTAGACTGGAGATATCCATTGGGTGAGTGA TGGAGGGAAAGGAAGCACGAAATGCTAATTTGGCCAGTATTTGGTTGGCAATTTCAGTAGGATGAAATGAATCCCAAAAT AAATGCAAGTTCCTGTGAACGCATGGCTTCTTATCAGGAACACATTGCCCATTATCCCCAACTTCACAGCATTTAGCAGT AATACTCCTCATACCTGATGAATTCCATATATATAGTGATCAACATTTAATTAATTTATAAATTAGTGATCAAATTAAAA CTTATATATTGACTAAAAGTGTATTTACAAGAAATTAAAAAGTTATTACCGGGTAACAAAGGGTTGTCGGATGAGATTAG AGCATTATTGATGTAGATAAATTTAGCGTTTTTAAGTGATAAGTCATTGTTGAATTGATCAACCAGTGATTTGATGTTGT CATTGAAAATCACCACTGCTTCGTTCTCCTCCTCAACACATTTAGAAGACCCTTTTCTCCCGTGAAGTTCAATTTGACGT GGAATGCAGCCTACAAGGCTCAGCCCAGTTAATGCAAATTTTCTTGCACCTGTTTTGTGCAAAGCCTGCCAAAAAGACCT TCTTTTAATACAACATTGTGAAAAGCATATTACTATAGGGACCATTGGGTATTTATGCCAAACATACTAGACAAAAACAA A
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0315800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGGATGAAAGGTCGTTTTACTACTTTATAAATACCCAATTCCTTCCTTGGCCACTTTGCTTTTGTTTTCTGATTGA TATATCTCCTTCCCTTCCTGTTCTAATAAGTAGAAAAGAAAAACACCAAGAGCTGAACACACCTGTTGTATCCTTAATTA TATTCTCCTTTTGTTTCCTCACCAGCTTGCTTGCAGCAATGGATTTCCCAAACCAATCCATGTCAGATTCTCCACAGAGA AAGCTGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACCACCAATCGCCAAGTCACTTTCTGCAAGCGCAGAAA TGGCCTTCTTAAGAAAGCTTATGAGCTATCTGTGCTTTGTGATGCAGAGGTTGCTTTGATTGTCTTCTCTAGCCGCGGTC GCCTCTATGAATATGCTAATAACAGTGTCAAAGCAACAATTGATAGGTACAAGAAAGCATGTTCAGATTCATCTGGGGCT GGATCTGCTTCTGAGGCTAATGCTCAGTTTTATCAGCAAGAGGCAGACAAACTGCGTGTGCAAATTAGTAACCTGCAGAA TAACAACAGGCAAATGATGGGTGAGTCTTTGGGCTCTATGAATGCCAAGGAACTCAAAAACCTGGAGACTAAGTTAGAAA AAGGAATTAGTAGGATTCGTTCCAAAAAGAATGAGCTACTATTTGCTGAAATTGAGTACATGCAGAAAAGGGAGATAGAC TTGCACAATAACAACCAGCTTCTTCGGGCAAAGATAGCTGAAAGTGAGAGGAACCACCCTAACTTGAGCATTTTGGCTGG GAGCACCTCAAACTATGAGTCTATGCAATCTCAGCAGCAGCAACAGCAGCAGCAATTCGACTCTCGCGGCTACTTCCAAG TCACTGGATTACAACCCACTACACATACTCAGTATTCGCGCCAAGACCAGATCTCATTACAACCCAGTAGTCAGTATGCA CGCCAAGACCACATGTCCCTTCAATTAGTGTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0315800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMDERSFYYFINTQFLPWPLCFCFLIDISPSLPVLISRKEKHQELNTPVVSLIIFSFCFLTSLLAAMDFPNQSMSDSPQR KLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKACSDSSGA GSASEANAQFYQQEADKLRVQISNLQNNNRQMMGESLGSMNAKELKNLETKLEKGISRIRSKKNELLFAEIEYMQKREID LHNNNQLLRAKIAESERNHPNLSILAGSTSNYESMQSQQQQQQQQFDSRGYFQVTGLQPTTHTQYSRQDQISLQPSSQYA RQDHMSLQLV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 14 14 - –
TMHMM
TMhelix
15 37 23 - –
Phobius
TRANSMEMBRANE
15 36 22 - –
Phobius
CYTOPLASMIC_DOMAIN
37 47 11 - –
Phobius
TRANSMEMBRANE
48 67 20 - –
TMHMM
TMhelix
49 66 18 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
68 330 263 - –
PANTHER
PTHR11945:SF418
77 276 200 2.1E-107 –
PANTHER
PTHR11945
77 276 200 2.1E-107 –
SMART
SM00432
82 141 60 3.4E-41
IPR002100
ProSiteProfiles
PS50066
82 142 61 33.669
IPR002100
CDD
cd00265
83 152 70 2.13321E-45
IPR033896
SUPERFAMILY
SSF55455
83 154 72 5.62E-33
IPR036879
PRINTS
PR00404
84 104 21 9.1E-33
IPR002100
ProSitePatterns
PS00350
84 138 55 -
IPR002100
Pfam
PF00319
91 138 48 2.8E-26
IPR002100
Gene3D
G3DSA:3.40.1810.10
94 157 64 4.5E-29
IPR036879
PRINTS
PR00404
104 119 16 9.1E-33
IPR002100
PRINTS
PR00404
119 140 22 9.1E-33
IPR002100
Pfam
PF01486
165 252 88 3.2E-27
IPR002487
ProSiteProfiles
PS51297
168 258 91 15.119
IPR002487
Coils
Coil
168 195 28 - –
Coils
Coil
205 225 21 - –
MobiDBLite
mobidb-lite
302 330 29 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000977
Molecular function RNA polymerase II regulatory region sequence-specific DNA binding Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0045944
Biological process Positive regulation of transcription by RNA polymerase II Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
Subterm of
Positively regulates
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0315800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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