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LotjaGi6g1v0317100.1

Overview

Field Value
Gene ID LotjaGi6g1v0317100
Transcript ID LotjaGi6g1v0317100.1
Lotus japonicus genome version Gifu v1.2
Description Thiosulfate sulfurtransferase GlpE; TAIR: AT2G21045.1 Rhodanese/Cell cycle control phosphatase superfamily protein; Swiss-Prot: sp|Q8RUD6|STR19_ARATH Rhodanese-like domain-containing protein 19, mitochondrial; TrEMBL-Plants: tr|I3S939|I3S939_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0317100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:63464155..63468846) extracted from Lotus japonicus Gifu genome v1.2.

CCGGTGGTGAATGTACAACGGGATCACCCGCATAAGAAAGAGGTCGCGGCTAATAGCTCACCAAATATAGGAGTCGTTTG CCAGTCGGTGGTGTCACTCGCCTGGTAGAGGAGTCGCGAAAGAGTGGTCAGGTCACTCCTGACTAGTCCAGTTTTGATTA AGGAAAAAATTTCAAACACTCTTTAGTTTTGTTCTCAAGTCAATAAACTTAAGAGAAGTGAGAGGCTTTGTCAGACCATT TGTTGTTTGAAGATCAGCAGGAATATGACAAACTTTGAGTGACTTGCTGAGAACCTTCTCTCGAACAAAATGTAAGTCTA ATTCCAGATGCTTAGTCTTTGGAGTGAAGAACATGATTATGTGGTAGTGAAACAAAGCTGAGATTGCCACACAGAATTAC AGGAGTATGAAACTGAAACTGTAGCTCAGTGAGGAGATTGCATCCAAAGTAACTCTCCTAAGTGCTGGCTAAACTTCTAT ATTTCATTTTTTAAAATTTTGAAATAGCATAAAGCATGAAAGAATATGTCATTACAAGTACCAAAATTAAAATTATAAAA ATGCATCCTATCATCACCACTACATGTCTGGCCTAACCCAAGGCGAAAAGTTTATGGTCAATCATGGAGGGATAGTACTA GTAGAACATTATTAATAAATGTCAACCTTTTCAGAAAATAAACAAATTAAGAATATGAGGATATAGTGCCATTTTTTCAT ATATAATAGAGTTCTTAATTTTTTTATTACATAGGTAGCTTGCACGGCAAGAGTTAATGGCTAAGTTTATGTACAATTAA ACAACACTTGCGAATAAATATATTGTATCAATCAGAAAGTCAACTTTAGAGAATCACAGGCCTTGGCGAAGCTATTTTAC ATGCATAAATACACTTCATATATACAAGTAACTGGGATTCAAGACTTTCCTGATCAGAGCTAAATCAACTTTATCTGCAA AGAAAGGAATGGATGCACCTAAAGAGTAAGAGTTCAGAATATGTTCCATTTTATGCCTGTAGTTTATGGCCTTGGTTTGA AAACCCTATGACTTTAATTATGTCATATGCACTACTCACATTCTGATTTATCCCTGTTTGCAGTCATCAAGATGTTGTGA ATGTGGATGTCGAAGCTGCCAAAGATCTGCTCAATTCATCTGGTTACCGTTATCTCGATGTGAGGTATCAAAGGGATTAA GTTTCTCCAATTTCATCTTCTTTTTTGTTTTTTTTAGGAAAAAACCAGTGAAAAAGAAGAAACTAATGTCCTTTCTTTTT TCCTATGAACAGAACAGTTGAGGAATTCAACAAAAGCCATGTTGATAATGCTTTAAATATCGCCTATATGTTTAGCACAG AAGCAGGTATATTGGATTATAGAATGGTAGCTTCATCTTTTGATTTCAGTTTTCTAGTCCTTAAGAGAAAATGCAGCCAC AAAGTATGAAAATATTTTGGATGAATAAATTCAGCAAACTTTCTTCAATGACACTTGTTTTCTTTGTCCTCTTTGCAAAT CAACAGGAAGGGTGAAAAATCCTGATTTTCTTGACCAGGTAGCAGCAGTATGCAAGAGTGAGGATCACTTGCTTGTGGTA AGAAATCTAAGCTAGCCTTCTAAAATATAAAACAGAAACAATCTCAAGAAAAAGATCAAAGATGTTGACTTATGATAATG GATCACAAATTCAGGCGTGCAACAGTGGAGGAAGAGGACGCAAAGCTGTTATAGATTTGCTTGATTCAGTAAGTCTGTGA CTAATCTCAAATTCTCAATCTTAGTTCAAGGTTACTGCTACATGCATATTTTGGTATGAATGACAACTAATACAAATTTG CCTCCTCTAGGTGTCAAAAGTGCACTTTAAAGAATAAACATGCATTATAAGGGTAGATTGAGATTTTAATTAAGTTTATG GTTTATTGTACTGTGTATGTGTTTTGTCATGATTTATTCTGTAGTCTTGTAGAGCCAAATGAATAAAGTAAATGGAGAAC TGAAAAATACATACTAAACTTGGTAAACGAATTTAGTGTGTTTGAAATATCAGTTGAATGTAACGTGAATGAACTTTCAT CCCAATCCATAAAAAGAGTTTCGTTTACTTTTTGGCTCAAAGTGCTGACGTCCGTTTGATCACGTATTGTGTAGGGATAT AAACATGTTTTTAACATGGGGGGAGGCTACTCTGCGTGGGTGGATGCTGGATTTGCTGGGGACAAGCCAGCAGAAGAGCT CAAAACTGCTTGCAAGTTCCGTCCTTGAGAGTGTTCATATTTTACACCACTGCCTAGTGAACATTGAAGGATGTATTATC TTATATCTTGCCTTCTCTAATTTTATGAATAAAGCTCAATGTTTCACTAGATGGTTAATTCATATTTGCTTGTACCAACT TCCAATGTAACAAAAAACAAATATCACAATGATGCATGAATAAGAAGAAACTGGACATTCATTTCCTCAAGCTTTATATT ACAGGGTCATTTGGCTCTCTAAAACTTGTGACTTTTTCTAACACATCAACCCTAATGCACGGTGATCTTCAAAATAATAA CATGAAGAAAAACTGAAAAAGAAACATTCTCAGGTTCCCTGTTAAATCATTCAGCTTCCCCACGTTTTGCTGCTTTAAGG AAAGATGCACTCTTGGTAATTTCACGCACTGGCTTGTTGGTTTGTCTGATGAAACTGTAGGTCCATGTACCAGCCACAGC ACCCAGAATCGGTGAAACGATGTATATCCATATTCCTTTGTACTGACTGTGCACAATAGCAGGTCCTAAGCTCCTTGCTG GATTCATTGATGCTCCAGTGGGAGGCCTGTTAAATATATTTTCAAAGCACAAATGAGTTCTAATAAGTTTGACCTTGCTT CTGCAATGATTTAAATCTGAATTTTATGGAATTATGTACATTCTTAATGTAAAATCCTGCACTAAATGGTATATTTCAGT TAGGTTCTGAGATAGGTTAATACCCGGCAAACAACACATTTAGGAGAACTGTAGAGCCAACTGCAAGTCCAGCCAACTCA CCAATCTGCAGGAATTAAAATTGAAATGAATCAACAAGATCTATAATTCTATATGTATCTGAAGTAGGACTGAAGAATGT TTATATATGTAGGTGAGGACTGAGGAGAATATATATTTTGGTTATACATTTCTTGAATATAATTATATAAGAACATGAGA TCTTACCGCTCTGTTATCAGTGGCAACTCCAGAGACGACGAACATAAGTAAGAAAGTGATTATGAATTCAATCACAAATG CTTGCAGGTCAGAACCAGCTGGGAGTGTCCCTGTAAACTGATTCTCCTTGCCACTAAATATAAGTCTGAGAGTTCCAGTT GCAAGTGTGGATCCAATTACCTGAGCTATTATATAAGCTGGTACCTACAATCAATATGATTCAAATGAAACAAAACTCAA TAATTTGAGACAAATTGAGATAGCAAAGACAAGAAAGAAGGTATAAAGAGGTATTTAATTCAATTCAACTTTAATACGGT ACGCAAAATTGGTGCATATTTTGTATTGAGGAAAAATGACAAAAATATGTTACATATAATTGAATCACATTCTCCTGTAT ATTAGCAAATCTTACATTTGACCAAAGTGATCTAGTAAAAAGGCTATTTTGATTCATTCACCTGCTTTAAGGGAAATCTT TTGGTGGTAGCATGAGCAATGGTAACAGCTGGGTTGAAATGTGCACCAGAGATGTGACCAATAGAGTAAACCAAAACCAT TACAGCCAGTCCCCAAACAATTGCAATCCCAGGAAGTGACACCACCTTGTCATTATTAAGGTTCACCACCACAGAAGCAC ACCCAGCAAATATCAAGAAGTATGTCCCTATCACCTCTGCTACCAACTACATTCAACAATCAACAAATTGTCACATATTT TCAAGCTCCATAATATAATCAATAAGTTGATTCAAAAAGAGACTACACCCTTCATGGATTCTGGATTCTAATATACAACT AAATCAAATAGTTTGGAACTTAATAATAGACAAACAATTTATTTCATAAAACCCTAATGGATTGTGACTAATTGGGAAGA AAGGAAAAGGAAAGAGAAAGACACCTTCTGCAAAAGAGGGACACAGTCTTCTTCAATGCTTTCACACTTTCTGGTGGCAT CACCATTTACATTAAAAACCACCTCGTGATTTCCGCTGCTTCCTGAATTATCAGCCATGACAGACAGAGAATAAGGAAAA GCCTAAGAAATGCCCTGCTTTGTCAAACAATGCTGTAGAAAAAAGGCTATATGGATTGATGTTGAGAGATTGCACTTGTT CAATTTCTTTCCAGATGGGGAAGGAAATTTGAGAATGCAACCTCTTTTTTTTTTTCTGGGAGCTAGTGCCTTATTTCTCA GCAATCACCATGCAATTTGCAATCTCCTTTGTTCTGTTTCTGTAGGTAACAATTTTATATGTGGTATTTGTGGTTGTGAT GTGAGAGAAGCATTGAAAGCTTGTCCAACGATTCACCGAAAATGCAGTTATGGGCATGAAATTAATGGCTTATTTTTGGT TTATAATAACCTCAAATTTCGTCAATACTAATGGTATGGGGTTGCTTGTCTGTACACACGTAGTATGCAGTAGATTTATA TAGGGGATGGGAGGGAATCAAGGTATTCAAAGATAAAGATATTCAAAGATCA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0317100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGCACCTAAAGATCATCAAGATGTTGTGAATGTGGATGTCGAAGCTGCCAAAGATCTGCTCAATTCATCTGGTTA CCGTTATCTCGATGTGAGAACAGTTGAGGAATTCAACAAAAGCCATGTTGATAATGCTTTAAATATCGCCTATATGTTTA GCACAGAAGCAGGAAGGGTGAAAAATCCTGATTTTCTTGACCAGGTAGCAGCAGTATGCAAGAGTGAGGATCACTTGCTT GTGGCGTGCAACAGTGGAGGAAGAGGACGCAAAGCTGTTATAGATTTGCTTGATTCAGGATATAAACATGTTTTTAACAT GGGGGGAGGCTACTCTGCGTGGGTGGATGCTGGATTTGCTGGGGACAAGCCAGCAGAAGAGCTCAAAACTGCTTGCAAGT TCCGTCCTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0317100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDAPKDHQDVVNVDVEAAKDLLNSSGYRYLDVRTVEEFNKSHVDNALNIAYMFSTEAGRVKNPDFLDQVAAVCKSEDHLL VACNSGGRGRKAVIDLLDSGYKHVFNMGGGYSAWVDAGFAGDKPAEELKTACKFRP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR44542:SF14
1 135 135 2.2E-69 –
PANTHER
PTHR44542
1 135 135 2.2E-69 –
Gene3D
G3DSA:3.40.250.10
3 121 119 1.1E-28
IPR036873
SUPERFAMILY
SSF52821
9 119 111 1.96E-25
IPR036873
SMART
SM00450
13 120 108 2.3E-14
IPR001763
Pfam
PF00581
16 116 101 3.3E-14
IPR001763
CDD
cd00158
18 115 98 3.19627E-20 –
ProSiteProfiles
PS50206
23 123 101 15.587
IPR001763

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0317100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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