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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0320000 |
| Transcript ID | LotjaGi6g1v0320000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT5G19790.1 related to AP2 11; Swiss-Prot: sp|Q6J9S1|RA211_ARATH Ethylene-responsive transcription factor RAP2-11; TrEMBL-Plants: tr|V7BSI8|V7BSI8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0320000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63673422..63675039) extracted from Lotus japonicus Gifu genome v1.2.
CCTATGTAAAACTTATAACATTGTGTCGATATCAGCAACAAGGCCTGCAATAGTGATGTTCTAATACATACACACAAATT ATGCACGGCCACAATATTTAATTTAGCACCAATGAAAATATTCTGCAATCTTGACATGTTCTTATTTATCTATTTCCTAG AGTGGCATATGCTTGCTTTCTAATTTAAGCTTATAAACGATCCTGCATTGAAGCTCCAAAAGGTTCGGTTATTCATGTAA TGCCACAGTTTGATATTTCAAAGAAGCAAAAAATGGGAGCACCAACATGTGGAATCCGTAGCCGAAAGAAGTCATCAAGA GGCCACCACAGGTTTGTAGGCGTTCGTCAAAGGCCATCAGGGAGATGGGTGGCAGAGATCAAAGATTCTCTCCAGAAAGT TAGGCTCTGGCTCGGAACATTTGACACCGCGGAGGATGCAGCTCGCGCATATGACAATGCTGCTAGAGCTCTGAGAGGTG CTAATGCTAGAACTAACTTTGAATTGCCTGAGTCTGAAACCACTGGTGGTGCTGCTAAGCGTGGTTCTGGTTCCAATTTC ATGCCTACTGAGCCTTTTTCCTTTGAGGATGCAAATGAGTCAAGTGCAGATGCTGATGGTCTTCTTGGTGCACTCAAGGC TAAACTGTTGGATGGAACAAAGGAAGGGAAGTTTCAATTTCCATTTCCTGCTACTAATTGTGCAGGACACGCTGTTCAAC CTGGCATGGTTAATCCAATATCAACTCAGAAATGTTATGGGAAGAAGGAGAAAGAGAAAGAGAAAGAGAAAGAGTTGTCA TCAACAACTTCACTCTATCATATGAATGGAACTTCCAACACTTTGCCTTCTTTGTTGAGTCCTTCATCAAACACTTCTAC TAAGAGTGTGGTTCTCCCAAATCATGATCATATGGAAGGTGTTGTAGCTAGCAGTTCTGGAATCAACTATCAACAACTTT GTCAAACTCCACCTTTAACAAGCATGACATGGTCCAATGACATGGCATATGAATTGCCTTGGCCTATGCAGATGAACCAA GTTACTACTGACACTGCAGCAAACTTTCCATGGCCACTTTATGGGGTGATGGAGCCTAGTGTTGATATGACATGTACAGA TCAGGGACCATCACATAGCAATAAGAGTGGCCAAACAAATATGATGAGCATGCAATTGCCTCAAGTTGGGGGAGGGAGTG AAGGCTTCTGGTCAATGGAGCAGCAACAATTTGTGCAGAGTGAGAACAACAAGTGGTTTGGTTCTAGTGGCTCTTGGGAT CCACTTTTCTATGTTCCCTCTGAGCTAGGCTGATTAATTAGTGAGAATATGTCAATGAAAGAGATCTCAATTTGTTTTTA ATATTGAATTTACAAACCATTCTTTAGTCTTGATATTATATAAGACCCTCTCTGTATGCACAAATTCACAAAATTTCTTC TGTGAGGAAAATAGAATGTTGTCTCTTCCTAGGATTTGGAGTCACTAAATTCATGCTATCAAGGATTTGAAGTTTTACAA TCTGACCATATGACTCACATTTTGCGTTACTTATTTCACATATACAATTTTACTCGGAACGTGAGTTGAGTTGTCCGACT TTGATCGAACAGTCCCTA
CDS sequence (LotjaGi6g1v0320000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCACAGTTTGATATTTCAAAGAAGCAAAAAATGGGAGCACCAACATGTGGAATCCGTAGCCGAAAGAAGTCATCAAG AGGCCACCACAGGTTTGTAGGCGTTCGTCAAAGGCCATCAGGGAGATGGGTGGCAGAGATCAAAGATTCTCTCCAGAAAG TTAGGCTCTGGCTCGGAACATTTGACACCGCGGAGGATGCAGCTCGCGCATATGACAATGCTGCTAGAGCTCTGAGAGGT GCTAATGCTAGAACTAACTTTGAATTGCCTGAGTCTGAAACCACTGGTGGTGCTGCTAAGCGTGGTTCTGGTTCCAATTT CATGCCTACTGAGCCTTTTTCCTTTGAGGATGCAAATGAGTCAAGTGCAGATGCTGATGGTCTTCTTGGTGCACTCAAGG CTAAACTGTTGGATGGAACAAAGGAAGGGAAGTTTCAATTTCCATTTCCTGCTACTAATTGTGCAGGACACGCTGTTCAA CCTGGCATGGTTAATCCAATATCAACTCAGAAATGTTATGGGAAGAAGGAGAAAGAGAAAGAGAAAGAGAAAGAGTTGTC ATCAACAACTTCACTCTATCATATGAATGGAACTTCCAACACTTTGCCTTCTTTGTTGAGTCCTTCATCAAACACTTCTA CTAAGAGTGTGGTTCTCCCAAATCATGATCATATGGAAGGTGTTGTAGCTAGCAGTTCTGGAATCAACTATCAACAACTT TGTCAAACTCCACCTTTAACAAGCATGACATGGTCCAATGACATGGCATATGAATTGCCTTGGCCTATGCAGATGAACCA AGTTACTACTGACACTGCAGCAAACTTTCCATGGCCACTTTATGGGGTGATGGAGCCTAGTGTTGATATGACATGTACAG ATCAGGGACCATCACATAGCAATAAGAGTGGCCAAACAAATATGATGAGCATGCAATTGCCTCAAGTTGGGGGAGGGAGT GAAGGCTTCTGGTCAATGGAGCAGCAACAATTTGTGCAGAGTGAGAACAACAAGTGGTTTGGTTCTAGTGGCTCTTGGGA TCCACTTTTCTATGTTCCCTCTGAGCTAGGCTGA
Protein sequence (LotjaGi6g1v0320000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPQFDISKKQKMGAPTCGIRSRKKSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDNAARALRG ANARTNFELPESETTGGAAKRGSGSNFMPTEPFSFEDANESSADADGLLGALKAKLLDGTKEGKFQFPFPATNCAGHAVQ PGMVNPISTQKCYGKKEKEKEKEKELSSTTSLYHMNGTSNTLPSLLSPSSNTSTKSVVLPNHDHMEGVVASSSGINYQQL CQTPPLTSMTWSNDMAYELPWPMQMNQVTTDTAANFPWPLYGVMEPSVDMTCTDQGPSHSNKSGQTNMMSMQLPQVGGGS EGFWSMEQQQFVQSENNKWFGSSGSWDPLFYVPSELG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 7 | 356 | 350 | 2.1E-134 | – | |
| PANTHER | 7 | 356 | 350 | 2.1E-134 | – | |
| Gene3D | 30 | 89 | 60 | 5.3E-27 | ||
| SMART | 31 | 94 | 64 | 2.9E-35 | ||
| Pfam | 31 | 80 | 50 | 3.4E-12 | ||
| ProSiteProfiles | 31 | 88 | 58 | 20.495 | ||
| CDD | 31 | 88 | 58 | 2.91008E-32 | ||
| PRINTS | 32 | 43 | 12 | 1.2E-7 | ||
| SUPERFAMILY | 32 | 88 | 57 | 6.54E-20 | ||
| PRINTS | 54 | 70 | 17 | 1.2E-7 | ||
| MobiDBLite | 85 | 120 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0320000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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