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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0322900 |
| Transcript ID | LotjaGi6g1v0322900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Light-dependent short hypocotyls protein; TAIR: AT2G42610.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9S7R3|LSH10_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10; TrEMBL-Plants: tr|I3T9J9|I3T9J9_MEDTR DUF640 family protein; Found in the gene: LotjaGi6g1v0322900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63878098..63878655) extracted from Lotus japonicus Gifu genome v1.2.
CCTCACACCATCCAGTCCACCATGTCTGCTGAAATGCAAAACGATTCCACTCAAGCTTCATCGTCGTCTTCACGACCATC TGCGGCTCCTTTGAGCCGCTATGAATCACAAAAACGGCGAGACTGGAACACCTTTGGCCAGTACTTGAAGAACCTGACAC CGCCAATTTCAGTGTCTCAGTGCAACTTCAACCACGTGCTGGACTTCCTTCGGTACCTCGACCAGTTCGGGAAGACCAAG GTCCACTTGCACGGCTGCATCTTCTTCGGCCAACCTGACCCGCCGGCGCCCTGCACCTGCCCTCTCAGGCAGGCTTGGGG GAGCCTTGACGCGCTCATCGGAAGGCTTAGAGCCGCCTATGAAGAGCACGGCGGCTCACCGGAGACTAATCCCTTTGGAA GCGGAGCTATTCGTGTGTACTTGCGTGAAGTCAAGGAGGGTCAGGCAAAGGCTAGAGGGATCCCATACACAAAGAAAAAG AAGAAGAAGAGGAGCCTAATAACGGGGAGTCATGATCAAGTTCAACCCTCAAAGTCCTTCAAGCAATTGGCTTCTTGA
CDS sequence (LotjaGi6g1v0322900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGCTGAAATGCAAAACGATTCCACTCAAGCTTCATCGTCGTCTTCACGACCATCTGCGGCTCCTTTGAGCCGCTA TGAATCACAAAAACGGCGAGACTGGAACACCTTTGGCCAGTACTTGAAGAACCTGACACCGCCAATTTCAGTGTCTCAGT GCAACTTCAACCACGTGCTGGACTTCCTTCGGTACCTCGACCAGTTCGGGAAGACCAAGGTCCACTTGCACGGCTGCATC TTCTTCGGCCAACCTGACCCGCCGGCGCCCTGCACCTGCCCTCTCAGGCAGGCTTGGGGGAGCCTTGACGCGCTCATCGG AAGGCTTAGAGCCGCCTATGAAGAGCACGGCGGCTCACCGGAGACTAATCCCTTTGGAAGCGGAGCTATTCGTGTGTACT TGCGTGAAGTCAAGGAGGGTCAGGCAAAGGCTAGAGGGATCCCATACACAAAGAAAAAGAAGAAGAAGAGGAGCCTAATA ACGGGGAGTCATGATCAAGTTCAACCCTCAAAGTCCTTCAAGCAATTGGCTTCTTGA
Protein sequence (LotjaGi6g1v0322900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAEMQNDSTQASSSSSRPSAAPLSRYESQKRRDWNTFGQYLKNLTPPISVSQCNFNHVLDFLRYLDQFGKTKVHLHGCI FFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGSGAIRVYLREVKEGQAKARGIPYTKKKKKKRSLI TGSHDQVQPSKSFKQLAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 1 | 178 | 178 | 1.8E-105 | – | |
| PANTHER | 1 | 178 | 178 | 1.8E-105 | ||
| Pfam | 15 | 139 | 125 | 5.3E-63 | ||
| ProSiteProfiles | 26 | 153 | 128 | 76.749 | ||
| MobiDBLite | 144 | 178 | 35 | - | – | |
| MobiDBLite | 162 | 178 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0322900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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