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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0323600 |
| Transcript ID | LotjaGi6g1v0323600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF538 family protein (Protein of unknown function, DUF538); TAIR: AT4G24130.1 DUF538 family protein (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9UKM7|MA1B1_HUMAN Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase; TrEMBL-Plants: tr|M5WN02|M5WN02_PRUPE Uncharacterized protein; Found in the gene: LotjaGi6g1v0323600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63933633..63938307) extracted from Lotus japonicus Gifu genome v1.2.
AAGGGGACAAAAATATATTGACAAAAAATAATAGCGAAGAAAAAATAGGGAGCCTTAGGCTTAGAGCTCTTACAGTCTTG AAAATTTACATTTTTCAAATTCATTTGCTTAACTGCTCAAACTATGACAAACATATTAAACAAGCTGCAAGCAATTTAGA CATACAAGCAGGTGAAGGCCGGCTGAAAAACAACCTGGGAAACATGTTTGATGGTCAATACAAAGCTACTCCTCTTGGTT TCTCCGCTCTGTGTGTTATGCGTGAGTATATAACAACCAATTGAATCAGTTAACTAAACCCATCTCAAAACAAAAGATAC TTGTTTGAGATTCAATATTTCAAGACTTCAAATGGCACAGAAAGATGGGGCAGCTGTTGCTAAAGGCCATGAAGAAGGAA CAAAACTGGCAATCTCTATCTTGGAAGAGTTTGGACTTCCACTGGGACTTCTTCCTCTGGCTGACGTAATTGAAGTTGGT TTTGTTAGAGGCACCGGTTACATGTGGATCCTGCAAAAGAAGAAGGTTGAGCACAGCTTTAAACTGATTAGCAAGCTGGT GAGTTATGATACTGAAATAAATGGTTATGTGTTGAATAACAAAATCAAGAAGCTCAAAGGGGTGAAAGCCAAGGAACTCA TGCTTTGGCCTCCTGTCAATGAAATTACTGTTGATGAACAACCCGCCGGAAAGATTCACTTCAAAAGTCTAGCTGGTATC ACCAAAACCTTCCCAGTTGGGGCTTTTGCTGCAGGCCAGTAATTGAGATGCAACTATGATATCAACTGCCTGAGACTAAA GCAGCTTCCAAAGAATTTTCAATCTATGCAATAAATCTGTCACCTTTCTTTTTTAATTTTCTTCCTGATGTATTCCTTTT TTTTTGAACGATTCCTGATGTATTCCTGATCAAAGATAAAAGTGATATAGTAAGAGATACAAAGATTCAGTTAAAATGGC TAAAATTAAATTACAGGGAAAGTGAAAATAATAAAGTCTATTGGCTCCTACCAAGCAGTCATCCCTCCTTTTGAATAGTT AGGTTGACGTTCTCTTGATTCATAACAAAATATTGTTGATCCATATAGCTAACATCACTTGGTGGGTGGTAGAAGACTTG TTGTCTTTATACACAAACATGCACACATTGTCCACCGTCCTCAACAATAAGTTTCACATATTTGAGTAACACAAGGCTTC CCCAATCAAGCACATCTCAAATATTGCCGAGATAACAACGTTGCGATTAATGAACGTGAACACCATTTGCAGCAATTATA TTCGATCTCTGGTAAACATTCTGACCTTTTCAACGGGGAAATTGAGTACAGCTTCATTGCCTCTCATGGCAAATGCACCT AGGTCATAAGCTAAAGAAGCAGCCTGTGCACTATCAAAGGTTCCAAGCCAGACCTTGTTGCTGTTCCTTCTTGTATTTCT GATATTTGCTGTAAACTTCCCCCAATGCCTTCTCCTGACACCTATATGGCATGTCCTTACAATACTAGTCTGCACTTCTT TAGCTTTGAACTTCTCTGCCAATCACTTTGGCTCATTGTTGTTTCCTTCTGTCGGTGCCTGTGAAATCATGGAGAAGTCA ACCATATCGAAGGAAAGAAAAATCATGAATAGGGTTATGAGCACCATTGCTTGAAAATGATTCGAACAAAAGGAAATGTT ATATTAGGAAACTGCTTTGTTTCTTATTCATCTCTCCTCTGGGCTATATTTTATTTCTTCAAACCCCACAATACCTTATT CAAATATCAGTTGGTGTAATTATAGTGTGGAAAGTAGAAACCTTTTTAGGAAAAACAATGATCTGTTGAAAATTTATTTG AAACCTTTCCAAAATATAAATTAGAGCAAAAATAATTAGGGCTGGAAAAAAACAGCACTCGTCAAATAGCACTCGATCAC CATATCACTCAAAGCTGATAGTCAAAGTTAATCACACAATTCTAGCAGGCATCAGACTAAAACAATGAAACCATTACATA ACTGAATTCCCTTTATCAAATATATACTCTAAATCCTTTAAGAAGCACGAAGAAGTTCTAAATCTTACAACCAAGGTGGG GGTGGGCAACGAATATGTATAACTTGAAAATTATGAATATCCAAAATGCCAAATGGGTAACAAATGTAAGGAAGCACAGA AGCATTTTATTCGTGACACGTAAAAAAAAAAAAACCAGTCAATTGTTGACATCAAAATGGCACTGCTTCAAAGTAGACAT CAGATTGAAGCAAATTATTATATTTAATTTAGAGTATTATTAAAAAATGAGGCCATTCAGAAACAAAATAACATCAGTTA GCCATGTACTTTGCGATTAGATTTTCAATTTATAGTCAAATGATAGAAACTGCAGAGAATAGAATCATGGAATTCATCAA AACTTATAATAGAAACTGTGACCAGTCAGGGTGGTTATCTAATAGGATTGTGATGTTGTGATGTCAAACACTAATCTTAT ACTCCGACTTATATTAACATTTTAAGTCAAGAACAAGAGTAGTACTACTAATACAAACCTAACCCAACAACACTCCTAAC ATGTTATTAGAACTGACCCTCAATGTGTGCATAAACTCAATAACTAAATGAGAGGATAAAAATAAGCTTGAACTGCAATC TCTTGAAAGCAGATTAGCAGAGGCAAAATGACATGTCTATTTAACAGTATAGAACCAAAATCTCTTGATAGCAAATTATA CCCTATACGGTACCGAATATACATTAAGGCACTTGAATTTGTAGAGTGGCAAACCAAAACAAATGTACCTGCCATTCTTA ATAATCCTAGTACAAAACTTGCAGCAAGAAAATATCAAGCTGATGGTTGTCTGTCAAAAGATATCTATGCAAAACAAAAT GAAACTTCTCATGTAATGCTTGTTTATGGTAAACCTCGCTTAGACAATGCCAGAGTTAAACACATATAGATCCAGTAAGG TATTGTAATGCCCCTTCTCAATGTCCTCCTCCTTTACTTGATGAAGAATAAGGGTCTCAATAATCAAGTCTTCCCAATCA ATATCGTCAACTACAGTTCCTCTTCTCTTCTTCCTTCTTCTCTCAGGATAAGAATCATCTAAAAGGTCAGGATTCAAAAT ATCACCCAGACCATCCTCTGAAGGCTGCGCAATTCTTTTTATCCTCATCTTAGCAGCATTGATCTTCTCTTGCCTCCTTT TATATTTCAATTGACCAGTAACAAATGAGGGTGGCATGGCATCCATTCCAACATCCTTCTCTAGTAAATTCATGAGCAGA AGCTTTTTGCTCAGCTCTGACTTCCCATCCCACCACTCCCTACAATCCTGGAGATTAAGTCCTGACCATTGAAACTTCTG AGCATTATCGCTGTTTGAAAACTTAGCACCACGATTCTCTTCTAAAAATCTCTTATACAACATGGATAAACATTCAGGTG AAATCTGAAACCCGTCAACATCCTTGATAGCTGCTAGATCAGCATTACTTCCTAATGAAAAATACTGAGAGTCCTTTCTT GATGCTATGCCAATAAACCCATATTCACAACCACCATCATCATCATCCTGTCTTAAGCATTCAGCAACAACATCTGCCAA ATCTAACCTAGGCTGATCAAGATTCTTTCTCTTCTCACCAGGTTTCGACATAGACTTCTTCTCCATATACTGAATCACAA ACGGCGCATTCCTAACAATGTTCTTAGTGGTAATATCCTTTCCCCAAGGCAACACCTGTGCAACTTTCACAAGTGTCTCA AGAAGCTCCCTGTACCTAGTTCTACAAGTGGAAACCACAGCATGAACTTCCTTAGCCAAATCATCCATCCGAACTTCAAC CTGATTCAACTCCGCCACCAAAACCAAAACCGCAACCACCAATGGAAGCGGCCGGCGACCGGTGCTCAAGTACCACTTCA CCGCACACTGAATCAAAAACACCCCCTGCTTCCGCATCCGGTCCAACGTCCACCCCTCAACATCAGCAAAACTGGGAGAA TTCTTGAGCGTCCGTTCCAATGAATGCACAATGTCAAACTCAGGAAAATCAGGTCTCTTCAACCCCAAGAAATCAATAAC ACGCAGTATCATCCTCCCGAGCTCATAAACATCCGAATCAACCGCGGACGCGACCTCCGCCATAGGCAGAGGGCGATCAT CCTTCCGCATAATCACATAAGCACAAGCACCAATCAAAACCTCAAACCAATGCCCCATCCCAAACTCACCCTCAGTGATT TGAGATATCATGCTTTTGACATCAACAGTCTTGGACCCTAACCCTAACCTATGTGTCAACTCCTCGATGGTGGTGTTGGC AGTGAAGAGTTTTCTGTCTTTGTAGGAGTAATGGCTGCCTGCACCGGCGGTTCCGACGCGGATGAAGGTGCCGACGGGGC CGTTGATGCCGCCGATTTGGGCTTCGAAATTGTCGAAGGGTTGAACGGCGGAGCATGAGGAGCAGAATAATTCGCCGGTG GTGTCGTCCCGTGTGAAGGATCTTTTGCCGCAGTGGATGCAGGAATTGGAGCTCGACATGAACAAGAATGGAGTAGCAGT TCAGGAGAGTGAGGGTATCATTCGCACTCTCCTTCCTCTGTCTCGATTTAGGGTTCGATAATGGCGATTGTGGAAATACC TCTGAGTTTTGGTGTTGAGTTTTCTGCAATTCTGG
CDS sequence (LotjaGi6g1v0323600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACAGAAAGATGGGGCAGCTGTTGCTAAAGGCCATGAAGAAGGAACAAAACTGGCAATCTCTATCTTGGAAGAGTT TGGACTTCCACTGGGACTTCTTCCTCTGGCTGACGTAATTGAAGTTGGTTTTGTTAGAGGCACCGGTTACATGTGGATCC TGCAAAAGAAGAAGGTTGAGCACAGCTTTAAACTGATTAGCAAGCTGGTGAGTTATGATACTGAAATAAATGGTTATGTG TTGAATAACAAAATCAAGAAGCTCAAAGGGGTGAAAGCCAAGGAACTCATGCTTTGGCCTCCTGTCAATGAAATTACTGT TGATGAACAACCCGCCGGAAAGATTCACTTCAAAAGTCTAGCTGGTATCACCAAAACCTTCCCAGTTGGGGCTTTTGCTG CAGGCCAGTAA
Protein sequence (LotjaGi6g1v0323600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQKDGAAVAKGHEEGTKLAISILEEFGLPLGLLPLADVIEVGFVRGTGYMWILQKKKVEHSFKLISKLVSYDTEINGYV LNNKIKKLKGVKAKELMLWPPVNEITVDEQPAGKIHFKSLAGITKTFPVGAFAAGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 136 | 136 | 7.1E-73 | – | |
| PANTHER | 1 | 136 | 136 | 7.1E-73 | ||
| Gene3D | 3 | 134 | 132 | 1.1E-24 | ||
| SUPERFAMILY | 6 | 133 | 128 | 1.44E-36 | ||
| Pfam | 21 | 133 | 113 | 5.7E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0323600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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