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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0323800 |
| Transcript ID | LotjaGi6g1v0323800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT2G27430.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45; TrEMBL-Plants: tr|I1MER6|I1MER6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0323800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63950730..63954217) extracted from Lotus japonicus Gifu genome v1.2.
AGTATCTAAATCTATTCCTTAATAAATGCATAAATTTGAGATGATGTACCATAATATTCACCATTACATTAAAGCGATAC AACTCTGTTCTGTGCATGTGCTCTGTTCTTAATTCCCCTGTATTTTTTAAGTTCACGGAGCTCTTTTAATAGTCTCATTG ATTCGCTTTCTCTCACTTCTCCCTCTGTTCTTTCTCTGCCTGTGAACTCACAAGCACGAGCAAACAAAATTATAAAAGAA TCAAAATACCATACACTTTTTCAATTTCTCACTTTGTTACCTCCTCACTTCACAAAGCAAACATGTCAACTCATTCATCA TCATCTTCTTCTTCTTCTATCTGGGCAGTGTCGAACATAAAGCTTCAGTTCTTTGCCCGCATCAGACGGTTTCTACAATC CAAAGCAACCCGAAAGCGCTGTGACGCCTCTGATCGATTCATCATAGCGAAAAGCAGGGCTGAACAGAACAACAACAAGG ATGAAAATCTTGAAACAGTTCAAGTTATGGAGGCGAAGCATGAGGAGGAGGAGGAAGAATTTGAGGAGTCTGCGATCACC CTGTTGCAGAGGACTGTGAAGATGCTTCACTTTGGGAGCTGGGAAGAGAAGGAGGTGGCTGCAAAGGAGATTGGAAGGTT AGCTAAAGAGGATGTCAAGGTTAGAAAGTTGATAACGGAACTCGGGGTGGTGCCGGTGTTGGTATCGATGGTGGCGTCGC CGGTGGCTACCCGCCGCCAGGCAGGGTTGACGGCGTTGATCCAACTAGCTGATGGAACCTACACGTGAGTTTTTTTTTGG AATTACTCTGTTTCTTATTTCTTCTTGTCTTTTAGTTGATGCTACTTATCACTATACTTTTTTGTTTTTGTTTTTAGTGT TTTATTCTTCTTGTTTGATTTCAAAAAGATCAACAAGAAGCAAGTAGCTCAATAATACACTTACATGTTGTCAACTTGAT GTGAAACTTGTATGTTTAATTCGAGTTTGAAACTTAGTGACTAAAATTTCAAGTTCTTTAGATTTCACTGTTTGAAATAT TGAATTAGTTCCCTATCTGATGAGTTTAAAGAGTCTAACTTGTTAGAATAGATGTCTATCTATCCAATGGCATAGAAAGA CAAAATGAATTGTTAGAACTTAAAACACAAAATTATTGTTTAGTTTAGCATACTGTCATGGAAGAAATCATAAAAAAATT AGAGCTGAATGTGTACATGGGTTGAGGTCCACTAACTTGAAATCATGTACAAGGGGCATGAATAAGCACTAAACTTTTTT TTCTCATACTTTTGTTGTCTTTTTGTTTCACATAGTGTTTAAAATGGATAAAAATGTTATCTAGTAGTTTTATTGGTGAG AGTGGAGTCATCATTTTGACTTTTGGGGGAGCAAGGACAAGATTGATGAATACCAAGTGGTTGTGGTTTGGCTTGGCGGG TTTTAGCTCAAGACTCCACAGTAAATTGAAACAAACCTTGGAAATTACAGAGGCAAGGAAAATGCATGGTGGTTGCAGTG CCTCGCTTTTAGAGTTATGATTCTCCCCTACAGGCTGTAGAAACTTGAAAGTTATCAAACTAATTAAACTTGCATCCTAA TTGAATCTGAGAATGGAATTTAGCCAATATTTTCGGATCAAATTTGCCAAAATCTCACTGTCACCACCGTGCCTTAATGT GCAATATTAGTTGGATGAAACATAAAGAATATTAAATACCTAAATGTGCGTTGCATGTGTCAATTGGGTTGCTGGGTTGT AGGTTGAGTTACAAGGGGACAATGTTCATATTGAAGAGACAATTTTGTCTTAATATAAATTACAGCTTATAAAATATAGA GTAGTTTATCAGATTCCTCTATTATCTTAATTTTATTGTCTTCTGTTGACCTCCATTTTCCAACACAGATCACATTTCAG ATTCTGCTTGACTTCACAATGCCATAGATGATATATTTATTTTAGTTGGCTTGGTCTTATTATTGTTTATACAAATTGCA TTATTATTCCCATCCAAGAAAGAAAAAATGAATTGAAGATGGTAGGATGATGCTAGTGGAAGTTTAGTTCTTAATTGACT ATAATTTATGCTGACTTTGAGATGATGCTAAATATATTTGTTTCTGACCAAAACTTTGACTAAGTTAAAACATGCTTTGA CTATTTCTTCAGGAACAAGGCTTTGATAATGGAGGCAGGAATATTGTCCAAGCTGCCTAAGACAGTTGACCTTGTAGATG AATCAACAATGAGTGATTTTGCAGAGTTGCTTTTGTCATTGTCTTCTCTTGCAAACACTCAATTCCCTCATTCTTCATTA GATTTTATCCCATTTCTAAGAGAAATCCTTGAGACAAGCTCAAATTTTGATACCAAAGCATCATGTTTGGGAGCTTTATA CAACCTATCAACTGTGTTGGACAATGTGGGGCCTTTGGTTTCTAATGAGATTGTCCCTATCCTCTTGGAACTGTCCTTAG TGAAAGAAATTTCAGAAAAGGCACTAGCCACTCTTGGGAACTTGGTGGTGACTTTGATGGGAAAGAAAGCAATCGAGAAC AACTCAAGGGTGCCAATAAGCTTCATTGATATCTTGTCATGGGAAGATAAACCCAAATGCCAAGAGTTATCTGTTTATAT TTTGATGATTCTTGCACATCAAAGCTCATCTCAGAGGGAGAAAATGGCACAGGCTGGGATTGTTCATGTGCTTCTTGAAG TGGTTTTGTTGGGGAGTGATTTGGCTCAGAAGAGAGCAATGAAACTGTTGCAATGGTTTAAGGATGAAAGGCAAACAAGG ATGGGGCCACATTCAGGTCCACAAACACCAAGATTTGCAATGGGCTCACCTGTGAATCAAAGAGATGTGAAAGAAGGGAA GAAATTGATGAAGAGTTTGGTGAAACAGAGTTTGAATAGGAATTTGGAAATTATAACTCAGAGGGCAAATGCGTCTGGGG AGTGTTCTAATCAGAAGTCTTTGGTTATCAGCACTAGTTCTAAGAGTTTGCCTTACTAAAGAGTAAAGACTTCACTTCTG TTTTTTTTCTAAATTTTGATGTTGACTAAGTTTTTTAGCAACTTAGACTTTCCTGATATGTGCTATTCTTTGGCACCTGC CAACTCTGAAACTTGAAAAAACGAAAATGTCTCCTTGACATGTCTTGCTAGCTACCACATTTGTATATGTGAATATAAAT GAAAAGTTTCCAATGATAGAAAATTGTTAAATTAATGGGAACTAAAAGGAATCAGTTAATTGATCAGCGTGTAAATTTGT GATTGTAGTGTTGATATTTCATGGTTTTTTTCTTAGATTTGTAAATCTAAGGCTTAATTCCATTTTGGGCCTATGATGTT TTATAAATGTGCGATCTGCACCCCATGTGTATAAAATGTGCGGTCAAGGTCCCTGACGTTTCTAAAACGTGCGATTAACG CCCTTCTGTTAGGTTCCGTCTGTTGACCAAACAGAATGCTAACGTGAC
CDS sequence (LotjaGi6g1v0323800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACTCATTCATCATCATCTTCTTCTTCTTCTATCTGGGCAGTGTCGAACATAAAGCTTCAGTTCTTTGCCCGCAT CAGACGGTTTCTACAATCCAAAGCAACCCGAAAGCGCTGTGACGCCTCTGATCGATTCATCATAGCGAAAAGCAGGGCTG AACAGAACAACAACAAGGATGAAAATCTTGAAACAGTTCAAGTTATGGAGGCGAAGCATGAGGAGGAGGAGGAAGAATTT GAGGAGTCTGCGATCACCCTGTTGCAGAGGACTGTGAAGATGCTTCACTTTGGGAGCTGGGAAGAGAAGGAGGTGGCTGC AAAGGAGATTGGAAGGTTAGCTAAAGAGGATGTCAAGGTTAGAAAGTTGATAACGGAACTCGGGGTGGTGCCGGTGTTGG TATCGATGGTGGCGTCGCCGGTGGCTACCCGCCGCCAGGCAGGGTTGACGGCGTTGATCCAACTAGCTGATGGAACCTAC ACGAACAAGGCTTTGATAATGGAGGCAGGAATATTGTCCAAGCTGCCTAAGACAGTTGACCTTGTAGATGAATCAACAAT GAGTGATTTTGCAGAGTTGCTTTTGTCATTGTCTTCTCTTGCAAACACTCAATTCCCTCATTCTTCATTAGATTTTATCC CATTTCTAAGAGAAATCCTTGAGACAAGCTCAAATTTTGATACCAAAGCATCATGTTTGGGAGCTTTATACAACCTATCA ACTGTGTTGGACAATGTGGGGCCTTTGGTTTCTAATGAGATTGTCCCTATCCTCTTGGAACTGTCCTTAGTGAAAGAAAT TTCAGAAAAGGCACTAGCCACTCTTGGGAACTTGGTGGTGACTTTGATGGGAAAGAAAGCAATCGAGAACAACTCAAGGG TGCCAATAAGCTTCATTGATATCTTGTCATGGGAAGATAAACCCAAATGCCAAGAGTTATCTGTTTATATTTTGATGATT CTTGCACATCAAAGCTCATCTCAGAGGGAGAAAATGGCACAGGCTGGGATTGTTCATGTGCTTCTTGAAGTGGTTTTGTT GGGGAGTGATTTGGCTCAGAAGAGAGCAATGAAACTGTTGCAATGGTTTAAGGATGAAAGGCAAACAAGGATGGGGCCAC ATTCAGGTCCACAAACACCAAGATTTGCAATGGGCTCACCTGTGAATCAAAGAGATGTGAAAGAAGGGAAGAAATTGATG AAGAGTTTGGTGAAACAGAGTTTGAATAGGAATTTGGAAATTATAACTCAGAGGGCAAATGCGTCTGGGGAGTGTTCTAA TCAGAAGTCTTTGGTTATCAGCACTAGTTCTAAGAGTTTGCCTTACTAA
Protein sequence (LotjaGi6g1v0323800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTHSSSSSSSSIWAVSNIKLQFFARIRRFLQSKATRKRCDASDRFIIAKSRAEQNNNKDENLETVQVMEAKHEEEEEEF EESAITLLQRTVKMLHFGSWEEKEVAAKEIGRLAKEDVKVRKLITELGVVPVLVSMVASPVATRRQAGLTALIQLADGTY TNKALIMEAGILSKLPKTVDLVDESTMSDFAELLLSLSSLANTQFPHSSLDFIPFLREILETSSNFDTKASCLGALYNLS TVLDNVGPLVSNEIVPILLELSLVKEISEKALATLGNLVVTLMGKKAIENNSRVPISFIDILSWEDKPKCQELSVYILMI LAHQSSSQREKMAQAGIVHVLLEVVLLGSDLAQKRAMKLLQWFKDERQTRMGPHSGPQTPRFAMGSPVNQRDVKEGKKLM KSLVKQSLNRNLEIITQRANASGECSNQKSLVISTSSKSLPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 24 | 442 | 419 | 3.6E-179 | – | |
| PANTHER | 24 | 442 | 419 | 3.6E-179 | – | |
| Gene3D | 47 | 426 | 380 | 4.3E-28 | ||
| Coils | 59 | 79 | 21 | - | – | |
| SUPERFAMILY | 92 | 363 | 272 | 5.35E-29 | ||
| MobiDBLite | 369 | 388 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0323800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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