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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0324300 |
| Transcript ID | LotjaGi6g1v0324300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT4G00893.1 F-box/kelch-repeat protein; Swiss-Prot: sp|Q1G391|FB217_ARATH F-box protein At4g00893; TrEMBL-Plants: tr|A0A151RL68|A0A151RL68_CAJCA F-box protein family; Found in the gene: LotjaGi6g1v0324300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63977890..63979781) extracted from Lotus japonicus Gifu genome v1.2.
TTCACAAAAACCCTTCTTTACTTTTTGGTTCCTTTCTCCAAAACCCAGAACGAGTAATACTTGACTTGTATGATTTATGT GTTCATACTTCAACGTTGCTGTAAATAACTACTAGGCGATCCACACTAATGAAGTGGCGTTTCCCATTAAAAAGGTAATC CTAATTATGGTGTTTTCTATATTTCCTCCGTCTCCAAATCACTCCTGCTACCACCCACTATTCAATACCTTGGTGTACGA TGTACTATATTGCATGTTTGGAAAGCATGAGGAAGGATGTTTAACCGTGCTTTGTATAATGGTTCATTCTTTAAGAATTA CCATCATCGTCGAACGGTATTCTTCCCTAGATCATAAAATTAACCTTTTTCACACTAATTGCATGAGGAAGGATGTTTAA CCGAACATGCTTTGTATAATGGTTCATTCTTTAAGAATTACCATCATCGTCAAACGTATTCTCCCCTAGATCATAAAATT AACCTTTTTCACACTAATTGCATGAGGAAGAATGTTTAACATGATTTGTATAATTCTTCATTCTTTAAGAATTACCATCA TTGTCGAACGACATTGAGATGTCCTGGTTATATGGAAATATTGTTAAGAATATGCCACAATGATTATCTAGTTCAAATAA CAAATTTCATTTAAGCATGACTTCTAAACTCTTGCTGAATCATTTGTTTCATCACATTCCACTAATTTCCTCCTCTTGTA TAGTTGTTTGAAGCAAAGTAGAAGAGCAAAAATGTTAGAAGAAACTTCTAGCAAAAGACAACGAGAACGGGAAGATGATT GGTCGAATCTTCCGCGTGACCTGCTGTCAAATATTGCAGATGATTTGGGACTGATGGAGTTGATGAATCTCCGTGGTGTT TGCAAGGATTGGCGCAATGTTTCTTCAGAAAATTTGCTCAATCAAGTGGAATCTTTTGGATGTGATCCCTGGTTTCTTCT CTATGATGGGGAAGGTTCTAAGTGTTCCTTGCTATTAAGCAACCACGATAAGATCTGCACTGCCACCATTCCTGAACTTG AGGGGGCAACTTGCCTTGCATCCCATGAAGGATGGCTACTAGTCTTTCGCGGCGGTTCAATGTTCTTCTTCTGCCCCTTT TCCATGGCGAAAATAGAGCTTCCAAACTGCCCTTTCACTGAACTATCTGGTCATGTTGCAGCATTTTCAGCTCCTCCCAC TTCTCAAGATTGCCATGTTGTTGTGATTAGACGCGGCGATGATGGTGAATTAGAATTGCACTTGCTTTCTCGGGGGCACG ACACTTGGGCTAAGCACAACCGTAATTTCAGAGTAGAACAATTTAGTACAATAGCGGCTGCAATTTTCATTCAAGGGGTG TTTCATTTCCGGGACGACAAGCAAGGGTTAGTCACATTTGATGCTGCTGCTGAAACTGAAAAATGGACTATTTATCGTAT TATAAGGCCAACAGAACCTGTAACAACTGCAACTACCTTGAATTATAGCTTACGCACAGGCAAGCTTGAATCCATTGATT TCAGTAAATTGGGATTAGATAGAAAGAGAGTTTCAATTTCTGCATGTGGGACTCTATATTCAGACTATAGTGACAACGGT GTAGTTGAGAAAGTGATTCCAGATGAAAGCATTGAGGCAAATATATCCTCTATAGGATCTGAAAGCCCTCACTTTAAAGG AGTATGGATCATGCCAAGATATCATACACCAAGCATGGATCATAGATGGTAACTTAATGGAGGTTTTTTTTTAATCTAGT TCTTATTTTGTGTTGAGACTTTCATGGATTTGTTATTTATTTCAAACTTAGGATTTTGAATAGTTGATTTGTGGATGAAT CACTTTCATTTGAAGAAGTTTTTATTTAGATGTATCCTTTAATTTTTTGCTG
CDS sequence (LotjaGi6g1v0324300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTGGCGTTTCCCATTAAAAAGTTGTTTGAAGCAAAGTAGAAGAGCAAAAATGTTAGAAGAAACTTCTAGCAAAAG ACAACGAGAACGGGAAGATGATTGGTCGAATCTTCCGCGTGACCTGCTGTCAAATATTGCAGATGATTTGGGACTGATGG AGTTGATGAATCTCCGTGGTGTTTGCAAGGATTGGCGCAATGTTTCTTCAGAAAATTTGCTCAATCAAGTGGAATCTTTT GGATGTGATCCCTGGTTTCTTCTCTATGATGGGGAAGGTTCTAAGTGTTCCTTGCTATTAAGCAACCACGATAAGATCTG CACTGCCACCATTCCTGAACTTGAGGGGGCAACTTGCCTTGCATCCCATGAAGGATGGCTACTAGTCTTTCGCGGCGGTT CAATGTTCTTCTTCTGCCCCTTTTCCATGGCGAAAATAGAGCTTCCAAACTGCCCTTTCACTGAACTATCTGGTCATGTT GCAGCATTTTCAGCTCCTCCCACTTCTCAAGATTGCCATGTTGTTGTGATTAGACGCGGCGATGATGGTGAATTAGAATT GCACTTGCTTTCTCGGGGGCACGACACTTGGGCTAAGCACAACCGTAATTTCAGAGTAGAACAATTTAGTACAATAGCGG CTGCAATTTTCATTCAAGGGGTGTTTCATTTCCGGGACGACAAGCAAGGGTTAGTCACATTTGATGCTGCTGCTGAAACT GAAAAATGGACTATTTATCGTATTATAAGGCCAACAGAACCTGTAACAACTGCAACTACCTTGAATTATAGCTTACGCAC AGGCAAGCTTGAATCCATTGATTTCAGTAAATTGGGATTAGATAGAAAGAGAGTTTCAATTTCTGCATGTGGGACTCTAT ATTCAGACTATAGTGACAACGGTGTAGTTGAGAAAGTGATTCCAGATGAAAGCATTGAGGCAAATATATCCTCTATAGGA TCTGAAAGCCCTCACTTTAAAGGAGTATGGATCATGCCAAGATATCATACACCAAGCATGGATCATAGATGGTAA
Protein sequence (LotjaGi6g1v0324300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKWRFPLKSCLKQSRRAKMLEETSSKRQREREDDWSNLPRDLLSNIADDLGLMELMNLRGVCKDWRNVSSENLLNQVESF GCDPWFLLYDGEGSKCSLLLSNHDKICTATIPELEGATCLASHEGWLLVFRGGSMFFFCPFSMAKIELPNCPFTELSGHV AAFSAPPTSQDCHVVVIRRGDDGELELHLLSRGHDTWAKHNRNFRVEQFSTIAAAIFIQGVFHFRDDKQGLVTFDAAAET EKWTIYRIIRPTEPVTTATTLNYSLRTGKLESIDFSKLGLDRKRVSISACGTLYSDYSDNGVVEKVIPDESIEANISSIG SESPHFKGVWIMPRYHTPSMDHRW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 31 | 81 | 51 | 4.71E-9 | ||
| ProSiteProfiles | 32 | 77 | 46 | 9.63 | ||
| Gene3D | 34 | 74 | 41 | 4.2E-8 | – | |
| Pfam | 34 | 70 | 37 | 1.1E-7 | ||
| PANTHER | 38 | 344 | 307 | 5.9E-94 | – | |
| PANTHER | 38 | 344 | 307 | 5.9E-94 | – | |
| SMART | 38 | 77 | 40 | 0.0027 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0324300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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