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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0324500 |
| Transcript ID | LotjaGi6g1v0324500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein CHUP1, chloroplastic-like protein; TAIR: AT4G18570.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|A0A0L9VFK3|A0A0L9VFK3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0324500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63994387..63998230) extracted from Lotus japonicus Gifu genome v1.2.
ATTCACTACATTCGGATCAAGATTCAACTAGTTTAAATATCTCTGGCCAGTGCGTATAGAAAAATTTTGTTGGGATAGAC AACCTTCTTAATATAATGTTTGAGACTGATGAAGATTAATCTCATGGTGGGAAGGTTTTAAGAGGATCTCTTGCATAAAA AAACAAAAAACAAAAACTTAGAGCACTAGTTGATTTTGTGACTTGTGCCTCATTAATACTTTCCCTCCTCACAGCTTCCC CAATCTTTGAGCTGTTTCTGTTTCTCTCTCTGCTCTGCTCCAGACAGACTCTCAGACAAGGACATCTTTGGTTACTACTA CTGTTAGGTTCCTCTCACTCTCACTCTCACTTTCAGACTCTCTCTATCTCTTCACATTGCAATGGGTTTTCCCAAGTCAC CAGCGCCACCTACACCTCCGCCATCCTCCGCCACCAAATCCAAATCCTCCTTCACTCGCACCATCGGTGCCTACTTCCCT CGCTCTTCCGCTCAGGTTCAGCCCCGTCCCCCCGACGTCACCGACCTCCTCCGCCTCGTCGAGGACCTCCGCGAGAGAGA GTCTCGCCTCAAAACCGAGCTCCTCGAGTACAAGCTCCTCAAGGAAACCGCCGCCATTGTCCCCATTCTCGAGAACGAGA TCATCTCCAAAGACGCAGAACTCGAAAGCAACGCCGAGAAGTTGGAACAACTGGAAGCAGAGAACCAGAGGCTCATGAAG GAGCTGGAAGAGGAGAAGACAGAGCATCAACGGAAAACCAAGGCATTGGAGGATGAGATAGCGGAACTCAAGAAAACGGC GTCGGATCGCGCTAGTAACAGAACGGTGGTGGAAAATGACAATGACGACGACGGCGTTTCTTCCTCTGCTTCGTCGCAGG GGTTTCAAGGACTGGTGGAGGTGACGGCGAGGTCGAGTCTTATCAGGAGCTTGAGGAAAACAGCGTCGTTGGATCATGCA AGTGGAAACCAGAAGCAGGTTGAAGCTCAAAGTGAAAAACCGCGTCACTCGCCGCCGTGTGACTCGGAGGAACTCGCTAA CTCAGTTATAACAACTAGATCGCGCGCGCCTCGCATTCCTAAACCGCCGCCGAGACCGTCGTCGTCATCTCATTCTCCGC CCTCTGTCACTACTGAGCAAGGAACTCTGCAACTAGCACCTCCGCCACCGCCGCCTCCGCCCAAGGCTGCGTCCAAGACT GCTCCTCCGCCTCCTCCTCCGCCGCTGCCGAAGGCAAGCAAGCGGCTCACAGCGAAGGTCACGAGGGAACCGGAGGTTGT GGAGTTTTACCACTCTCTAATGAGGAGAGAATCGCAGTCCAGGCGGGAGTCGAGTTCCGGCGTGGCGGAGGTGCCGCCGT CGGCGGCAAATCCACGGGACATGATCGGAGAGATTGAGAACCGCTCAACTCACCTGCTAGCGGTAACCGTTTCTATCAGT TTTGCTAAAAATTTCGGTTTTGCCACTGAGCATTTATGTATGTCAATGTCAAGTTCTTACTTTAGTTTGAAATGGATTTC TGATTAGTGATTACTTAACTAACACAAACTAATTATTCCATAAATTAACTTTTGATAGATACTACACATTGATAATTTGG AGCCCACAACAATAACTATGGTCCCAAATTGTAGAGCCACTTTGTGGAATTTCACTAAATTTTTGAAATGGTAAAATGGG AAAAAGAAGTATCAATGAATTATGTTGAACTCTTGTTTTCAGATCAAAACTGATGTGGAAACACAAGGAGATTTTATTAG ATGCTTAATCAAAGAAGTGGAGGGTGCTGCATTTACCGACATTGAAGATGCTGTGCTCTTTGTTAAATGGCTTGATGATG AGCTCTCCTACTTGGTATTTGATTTCATGTTACTTTATACTTATCCTCCAATTCTGCATTGAGGTTAATGAAGAGAAATT TTTAATGGTTTTTTGTTTTTGATTTTCTGTTAGGTGGATGAAAGAGCAGTGCTGAAACACTTTGATTGGCCGGAGCAGAA AGCCGATGCTTTACGTGAGGCTGCATTTGGGTATTGTGATCTGAAGAAGTTAGAATCCGAGGCCTCGTCCTTCCGGGATG ATCCTCGGCAGCCATGTGGTCCAGCACTCAAGAAGATGCAGGCTCTATTGGAAAAGTAAGTGAAGTTGTGATTGTTTCTT TCTTAAAATGTGAATTGAATGCAGAGTCTTGTAGAACACACACTGACTTTGTCTCAAAAATGGGTTATGACAGATTAGAG CATGGGGTTTACAATATCTCAAGAATGAGGGAGGCAGCAACAAATAGATACAAAGGCTTCCTAATACCTGTACATTGGAT GCTTGATAATGGTTTTGTGAGCCAGGTAATTTCTATGTATCAATTGAGAAGTTACATGTGCTTAATTTTAGCTGCATAGG TTAGTTAATGCAGGGCAAAATATTTTCAGTGTCTCACTGACTGATGGCCAAAAGACAAAAGTTGTCTCAACTGCTTTATA TTAACACATAATTTGTTTTATGCGTTTCTGAAGAATTGTCTTCAGTGGTATTTATTTATTGGTTGTGTTCTGTTTTAAAC AGGACTATCAATAAATTAAGTACTAATGTTTTCTGTTGTTGATATCCTATTCTGCTCCCCTTTTCAGATGTATACTTGTA TCAAATATAAAACACAACATACATATCGAATCTATCAAATGTTAACTAGTTTTTTATTGTCTGATTATGTCGGAAACATA TTGCCAAAACATTGCAAACCTTAATAGAAAAAATATATCTTGGTGTAATTTACTATCTGCCATGTAGTGTAATCAACAAC TGTTTCTAAAATGTGCAATGCTGGTAGCAACATGACAAACCAATGGTTGGACTTGTACTTCTGTTTCTCTGTGGGCACAT GTGAACTCCGAGATCTCTAAAATCCATCTGTTTGTCTGCTTCATTTTAACTTGATAAAAAGAGGAGATTCTTTTTCTTGG TAGTAGTCAAGTGGTACCTAGGATAAATAACTTCACTTACACTCCAAGTGTTTAAAATAAATATTACATGATAGTAGAAT AAAGAGCAAAAGGACAACACCTATTGAGGCATGGATAGGATAGCATTGGTAGATTCTATTACAATTTTCTAGCTACATTG TGAAGAATGATGGGGTAAACTTAAGTATCAAATGTTGTGTTAAGTGAGTTCATTTATCTTACCTAAAACCTTATGTTGTG GCAGATGAAGTTGGCGTCGGTAAAATTAGCTATGAAGTACATGAGAAGAGTCTCTGCTGAGCTTGAGACAATTGGTGGTG GTCCTGAAGAAGAAGAGCTCATTATCCAAGGAGTTAGATTTGCATTTCGAGTACATCAGGTAAATCCTCCAATACATGTT CTTTCTCATACAGACAGAGTATATAGGGCCATCTCATTTGGAGTAATGAGTTGTTAATATTTGGCAGTTTGCTGGGGGCT TTGATGGAGAGACAATGAAGGCATTCCAAGAATTGAGAGTTAAAGCATGCCATCTTCAGTGCCATAGCCAGCAACAAAAA TTCTTTTACAGGCCTGCAACATGCTAGTGCTGGAGCAAACTTAGCTTCAAAATGTCTTTTTCTGTTGTGTAGACAGTGAC ATTTTGTTTGTGAATAGAATGATAATAGTATCAGCCATGAACGTATTACTAGTGCTGGAACTCTTCATGACTTCATCCAT TCATTAATTGCTTGAAAAGGGAAACAGGAGTTACAGGACAGTCATACCAGTTCACTGATTTCTGTTAAGACAGTAACATT AATTTGTTTCCTGCCGTTGTGGATTTCCTTGAAAATTCAAATTCAATTCTGAGTGAACCTAAGAAATAAATGAAAAAATA GTAC
CDS sequence (LotjaGi6g1v0324500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTTCCCAAGTCACCAGCGCCACCTACACCTCCGCCATCCTCCGCCACCAAATCCAAATCCTCCTTCACTCGCAC CATCGGTGCCTACTTCCCTCGCTCTTCCGCTCAGGTTCAGCCCCGTCCCCCCGACGTCACCGACCTCCTCCGCCTCGTCG AGGACCTCCGCGAGAGAGAGTCTCGCCTCAAAACCGAGCTCCTCGAGTACAAGCTCCTCAAGGAAACCGCCGCCATTGTC CCCATTCTCGAGAACGAGATCATCTCCAAAGACGCAGAACTCGAAAGCAACGCCGAGAAGTTGGAACAACTGGAAGCAGA GAACCAGAGGCTCATGAAGGAGCTGGAAGAGGAGAAGACAGAGCATCAACGGAAAACCAAGGCATTGGAGGATGAGATAG CGGAACTCAAGAAAACGGCGTCGGATCGCGCTAGTAACAGAACGGTGGTGGAAAATGACAATGACGACGACGGCGTTTCT TCCTCTGCTTCGTCGCAGGGGTTTCAAGGACTGGTGGAGGTGACGGCGAGGTCGAGTCTTATCAGGAGCTTGAGGAAAAC AGCGTCGTTGGATCATGCAAGTGGAAACCAGAAGCAGGTTGAAGCTCAAAGTGAAAAACCGCGTCACTCGCCGCCGTGTG ACTCGGAGGAACTCGCTAACTCAGTTATAACAACTAGATCGCGCGCGCCTCGCATTCCTAAACCGCCGCCGAGACCGTCG TCGTCATCTCATTCTCCGCCCTCTGTCACTACTGAGCAAGGAACTCTGCAACTAGCACCTCCGCCACCGCCGCCTCCGCC CAAGGCTGCGTCCAAGACTGCTCCTCCGCCTCCTCCTCCGCCGCTGCCGAAGGCAAGCAAGCGGCTCACAGCGAAGGTCA CGAGGGAACCGGAGGTTGTGGAGTTTTACCACTCTCTAATGAGGAGAGAATCGCAGTCCAGGCGGGAGTCGAGTTCCGGC GTGGCGGAGGTGCCGCCGTCGGCGGCAAATCCACGGGACATGATCGGAGAGATTGAGAACCGCTCAACTCACCTGCTAGC GATCAAAACTGATGTGGAAACACAAGGAGATTTTATTAGATGCTTAATCAAAGAAGTGGAGGGTGCTGCATTTACCGACA TTGAAGATGCTGTGCTCTTTGTTAAATGGCTTGATGATGAGCTCTCCTACTTGGTGGATGAAAGAGCAGTGCTGAAACAC TTTGATTGGCCGGAGCAGAAAGCCGATGCTTTACGTGAGGCTGCATTTGGGTATTGTGATCTGAAGAAGTTAGAATCCGA GGCCTCGTCCTTCCGGGATGATCCTCGGCAGCCATGTGGTCCAGCACTCAAGAAGATGCAGGCTCTATTGGAAAAATTAG AGCATGGGGTTTACAATATCTCAAGAATGAGGGAGGCAGCAACAAATAGATACAAAGGCTTCCTAATACCTGTACATTGG ATGCTTGATAATGGTTTTGTGAGCCAGATGAAGTTGGCGTCGGTAAAATTAGCTATGAAGTACATGAGAAGAGTCTCTGC TGAGCTTGAGACAATTGGTGGTGGTCCTGAAGAAGAAGAGCTCATTATCCAAGGAGTTAGATTTGCATTTCGAGTACATC AGTTTGCTGGGGGCTTTGATGGAGAGACAATGAAGGCATTCCAAGAATTGAGAGTTAAAGCATGCCATCTTCAGTGCCAT AGCCAGCAACAAAAATTCTTTTACAGGCCTGCAACATGCTAG
Protein sequence (LotjaGi6g1v0324500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFPKSPAPPTPPPSSATKSKSSFTRTIGAYFPRSSAQVQPRPPDVTDLLRLVEDLRERESRLKTELLEYKLLKETAAIV PILENEIISKDAELESNAEKLEQLEAENQRLMKELEEEKTEHQRKTKALEDEIAELKKTASDRASNRTVVENDNDDDGVS SSASSQGFQGLVEVTARSSLIRSLRKTASLDHASGNQKQVEAQSEKPRHSPPCDSEELANSVITTRSRAPRIPKPPPRPS SSSHSPPSVTTEQGTLQLAPPPPPPPPKAASKTAPPPPPPPLPKASKRLTAKVTREPEVVEFYHSLMRRESQSRRESSSG VAEVPPSAANPRDMIGEIENRSTHLLAIKTDVETQGDFIRCLIKEVEGAAFTDIEDAVLFVKWLDDELSYLVDERAVLKH FDWPEQKADALREAAFGYCDLKKLESEASSFRDDPRQPCGPALKKMQALLEKLEHGVYNISRMREAATNRYKGFLIPVHW MLDNGFVSQMKLASVKLAMKYMRRVSAELETIGGGPEEEELIIQGVRFAFRVHQFAGGFDGETMKAFQELRVKACHLQCH SQQQKFFYRPATC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| MobiDBLite | 1 | 16 | 16 | - | – | |
| PANTHER | 6 | 567 | 562 | 2.9E-255 | – | |
| PANTHER | 6 | 567 | 562 | 2.9E-255 | ||
| Coils | 46 | 73 | 28 | - | – | |
| Coils | 87 | 139 | 53 | - | – | |
| MobiDBLite | 112 | 169 | 58 | - | – | |
| MobiDBLite | 112 | 154 | 43 | - | – | |
| MobiDBLite | 155 | 169 | 15 | - | – | |
| MobiDBLite | 187 | 293 | 107 | - | – | |
| MobiDBLite | 187 | 201 | 15 | - | – | |
| MobiDBLite | 257 | 285 | 29 | - | – | |
| MobiDBLite | 308 | 333 | 26 | - | – | |
| SUPERFAMILY | 388 | 408 | 21 | 4.71E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0324500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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