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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0324600 |
| Transcript ID | LotjaGi6g1v0324600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phospholipase A1; TAIR: AT4G18550.2 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|O49523|DSEL_ARATH Phospholipase A1-IIgamma; TrEMBL-Plants: tr|I1MER2|I1MER2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0324600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64004168..64006966) extracted from Lotus japonicus Gifu genome v1.2.
ATTGTGTCATGATTCCTTCACTTGTATAGCAAACAACAGCCGGTAGCTATATTCTTCCTCTCCTCTGCTCTAACCAAATT AAATAATGACCTTGATCCCAACAAGGTGTTAGTCAATTTGTTATACAAGTTATTGGAAAAATCAAATCAATTGAGCTAGC TGTGTCATGTGTGGCTTATCCTTCCAAAAGTCAAATCATCATCATCGTTTATTACTTAGGAGTTCATAAATGATATGAAG GTCAAGGTCTATGTGGTTCACTGGTTCCATATATAAAACACAAAGTAGCAATCATGATCAGAAGGTGGATCGATCGTTCC AAGAAGAAGATGGGCAACAAAAACAGCAACAACAAAAACAACAACGACAATACCAACACCAACAACACCACCACCAACAG CAACATTGCTTCAAAATGGCAACAACTCAGCGGCCAGGATGACTGGAATAATCTGCTAGACCCTCTTGACATCGACCTCC GCCAGTACATCATCCACTACGGCGAAAGGGCGCAAGCGACGTACGATACTTTCAACACAGAGAAAGCATCAAAGAATGCC GGAAACACCAGGTATGGAAAAGATGACTTCTTCTCCAAGGTGAGTCTAGAACAATGCAATCCCTTCAAGTATTCTGTCAC CAAGTTTCTCTACGCCACGTCGAAAATCGATCTCCCGGAAGCGTTTATTGTGAAGTCTCTGTCGAGAGAGGCGTGGAGCC GGGAATCGAATTGGATCGGGTATGTCGCGGTGGCCACGGATGAGGGCAAAGCTGTGTTGGGGAGGAGGGACATTGTTGTT GCTTGGAGAGGGACGGTGCAGACTTTGGAGTGGGTTGATGATTTTCAGTTCATTTTAGTCCCTGCGCCAAAGGTGTTTGG TAATAATAGCAAGAATCCCAAAGTGCATCAGGGATGGTATTCTATTTACACTTCTGATGATCCTCGTTCTCCTTTCAACA TTACCAGTGCCAGAGACCAGGTACATACATATACTTCTCTATTCTCATACTTACTCTCTCTAATTCATGTCTAAACATGA AACTTGATATTATGCCAACCATTTTCCTTTTCATTTTCATTATATTACAGCATATTTTTTTGGTGAACTTATGTGATTTT AGTTGAAAAAGAAAAAATAGCGTGAAAGGAGCAGCATCAACCTGCGGTCCTTAATTTGATTCTTGGGTTTATGTTCATAG AAAAAACATTGTTGTTGAAACCAGACCGGTCTGACCGGTTTTACACCGGTTAGAATATAATATTAAAATCATTATTTAGC ATTTACCTAATGTCTTAAGACTTAAGCTTTTGAAATAATTGATTGTTTGACATAATATATATCATAACCTTTATGACTAA AAGGTCTAGAGTTCGATTATTGTCGCCTCCAATTTTCTAATAAAACGTGGAATTTAATTACATTAATTGTAGGTGAGTAT GTGCATTATCCACATTCCACGCTTCAAGCCTAAATGACTCTTGCATGAGAGATATGTTAAAATACAATATAAAATCATTC ATTTTAGTTTTTACCCAATAACTTATACCGGTCAAAACCTATTAAATTTCAACTTTTCTTATACTCTTACTTAATCGTAC CTCGAATGGATAGTGACATCCGTTAAGAAAAAAACCCACATTATCGTTCACTGCTATGAATATTTTTGTATCTTTTTTCA ATTTTATGTTATAAATATATTATATGATGATTTTATATTAATTTAAAATTTTATCTGACTTAATTTCTTAACTGACCCTA TACATTTAAATAATATTATATAATATTAAAGATATATACATTACTTAATTATTATATCAGTTCACTCATGTTCGACAATC GTGGTAGGGATATTTTTACTCTAACACATATATGGTTTGGTTATTTTAAATACTCATGACATGTTCATTCCACGATGAAA TGCTCTATAATCAATTATAGTTAAAAGTTACATGTTTTAGTTTCTAAATAAACTTGCTTTATGTGAAGGTCCTAAGTGAG GTTAGAAGGTTGGTGGAGAAATATAAGAATGAAGAAATCAGCATAACCGTAACAGGGCACAGTTTAGGTGCTGCAGTTGC AACACTCAATGCAGTGGACATTGTTGCAAATGGTTACAACAAGCCAAGTGACCCGTCTATACCGGCATGTCCTGTAACAG CTATTGTATTCGCTAGTCCAAGAGTAGGTGATAGCAACTTTCAGAAGGTTTTTTCTGGGTACACAAATCTGAAAACCATT CGCATTCGAAATGAGTTAGACATTGTTCCAAACTACCCCTTTATTGGGTATTCAGATGTGGGTAAGGAGTTGATGATTCA AACCCAAAAATCAATGTACTTGAAGAGTCCTGGGAATCCGAGTAGTTGGCATAACTTGGAGGGTTACTTGCATGGAGTAG CGGGAACGCAAGGGACCAAAGGAGGGTTCAAATTGGAGGTTAATCGAGATATTGCACTTGTGAATAAGAGTGTAGATTCT TTAAAAGATGAGTACTTTGTGCCTGTGTCATGGAGGGTCGTCCAGAATAAGGGGATGGTTCAACAACCAGATGGTTCATG GAAGCTGATTGATCATGATGAGGATGCCTGACTTAATTTGATAATGTTTGTTTAGTTTCACATTTGAGATTGTTATTTTG ACAACATTCATGTGGGAACTTTGTCCTTTATTTCTTCATTGTTTCTTAGTGATTTATAATAAATGCTTTATTTAATTCAT GAAAGAACTATATTTTTTTTAATTATAGGCATGAGCTATATATGATTTACTCACACTTCTATTATATTTCACTTTATTC
CDS sequence (LotjaGi6g1v0324600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCAGAAGGTGGATCGATCGTTCCAAGAAGAAGATGGGCAACAAAAACAGCAACAACAAAAACAACAACGACAATAC CAACACCAACAACACCACCACCAACAGCAACATTGCTTCAAAATGGCAACAACTCAGCGGCCAGGATGACTGGAATAATC TGCTAGACCCTCTTGACATCGACCTCCGCCAGTACATCATCCACTACGGCGAAAGGGCGCAAGCGACGTACGATACTTTC AACACAGAGAAAGCATCAAAGAATGCCGGAAACACCAGGTATGGAAAAGATGACTTCTTCTCCAAGGTGAGTCTAGAACA ATGCAATCCCTTCAAGTATTCTGTCACCAAGTTTCTCTACGCCACGTCGAAAATCGATCTCCCGGAAGCGTTTATTGTGA AGTCTCTGTCGAGAGAGGCGTGGAGCCGGGAATCGAATTGGATCGGGTATGTCGCGGTGGCCACGGATGAGGGCAAAGCT GTGTTGGGGAGGAGGGACATTGTTGTTGCTTGGAGAGGGACGGTGCAGACTTTGGAGTGGGTTGATGATTTTCAGTTCAT TTTAGTCCCTGCGCCAAAGGTGTTTGGTAATAATAGCAAGAATCCCAAAGTGCATCAGGGATGGTATTCTATTTACACTT CTGATGATCCTCGTTCTCCTTTCAACATTACCAGTGCCAGAGACCAGGTCCTAAGTGAGGTTAGAAGGTTGGTGGAGAAA TATAAGAATGAAGAAATCAGCATAACCGTAACAGGGCACAGTTTAGGTGCTGCAGTTGCAACACTCAATGCAGTGGACAT TGTTGCAAATGGTTACAACAAGCCAAGTGACCCGTCTATACCGGCATGTCCTGTAACAGCTATTGTATTCGCTAGTCCAA GAGTAGGTGATAGCAACTTTCAGAAGGTTTTTTCTGGGTACACAAATCTGAAAACCATTCGCATTCGAAATGAGTTAGAC ATTGTTCCAAACTACCCCTTTATTGGGTATTCAGATGTGGGTAAGGAGTTGATGATTCAAACCCAAAAATCAATGTACTT GAAGAGTCCTGGGAATCCGAGTAGTTGGCATAACTTGGAGGGTTACTTGCATGGAGTAGCGGGAACGCAAGGGACCAAAG GAGGGTTCAAATTGGAGGTTAATCGAGATATTGCACTTGTGAATAAGAGTGTAGATTCTTTAAAAGATGAGTACTTTGTG CCTGTGTCATGGAGGGTCGTCCAGAATAAGGGGATGGTTCAACAACCAGATGGTTCATGGAAGCTGATTGATCATGATGA GGATGCCTGA
Protein sequence (LotjaGi6g1v0324600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIRRWIDRSKKKMGNKNSNNKNNNDNTNTNNTTTNSNIASKWQQLSGQDDWNNLLDPLDIDLRQYIIHYGERAQATYDTF NTEKASKNAGNTRYGKDDFFSKVSLEQCNPFKYSVTKFLYATSKIDLPEAFIVKSLSREAWSRESNWIGYVAVATDEGKA VLGRRDIVVAWRGTVQTLEWVDDFQFILVPAPKVFGNNSKNPKVHQGWYSIYTSDDPRSPFNITSARDQVLSEVRRLVEK YKNEEISITVTGHSLGAAVATLNAVDIVANGYNKPSDPSIPACPVTAIVFASPRVGDSNFQKVFSGYTNLKTIRIRNELD IVPNYPFIGYSDVGKELMIQTQKSMYLKSPGNPSSWHNLEGYLHGVAGTQGTKGGFKLEVNRDIALVNKSVDSLKDEYFV PVSWRVVQNKGMVQQPDGSWKLIDHDEDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 35 | 35 | - | – | |
| MobiDBLite | 16 | 35 | 20 | - | – | |
| PANTHER | 37 | 428 | 392 | 8.2E-194 | – | |
| PANTHER | 37 | 428 | 392 | 8.2E-194 | ||
| Gene3D | 38 | 429 | 392 | 1.3E-178 | – | |
| SUPERFAMILY | 112 | 342 | 231 | 1.17E-34 | ||
| CDD | 113 | 367 | 255 | 7.72884E-47 | – | |
| Pfam | 168 | 328 | 161 | 4.7E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. | ||
| Molecular function | Phospholipase A1 activity | Catalysis of the reaction: phosphatidylcholine + H2O = 2-acylglycerophosphocholine + a carboxylate. |
Expression pattern of LotjaGi6g1v0324600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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