Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0326500 |
| Transcript ID | LotjaGi6g1v0326500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Wuschel homeobox protein; TAIR: AT5G45980.1 WUSCHEL related homeobox 8; Swiss-Prot: sp|A3B6V0|WOX12_ORYSJ WUSCHEL-related homeobox 12; TrEMBL-Plants: tr|A0A0L9VFE3|A0A0L9VFE3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0326500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64171394..64174578) extracted from Lotus japonicus Gifu genome v1.2.
CTTATTTCTACCTCAACTCTTCATCATAAAGAGACTCTCTCTCTTTACCTTTGCTTTCCCCACAGATATTGAAATGTGAG ATCAATCGACAAAGTGATCAGATCACCCACCCCTCTGTTGAAGCCAGCCCTAACAGCAGAAGCAGCAGCAGCATTGAACA AGATTCCTTATTAAGTCCCCAGCATGTATTCCTTTCCATGTTCCCTTTGCTTCTCGTCCGGGGGGAATTTCCCTCTACTT TAAAAAGCAACCACCATTAATTGCTTATTGCAAAAGCTATTATATAGCTAGCTAGTTGTACTCTCACTACTGCAGGGGAT GGGAGAAGATACATTACACGGTACTCTCCCTTTTTATTTATTGATCCCTTTCCTTTCTAGTTCATCTTTCTCACAGGCGA TTCCTGTTGCCTCTCTTCCACTTTTATATATATTTTATCTTTCATTTTAATATGCTAGCTTCTTAATTGTACATCACCAA TATATAGTTTTGTAACAATTTTTTAATTGATGCAACAGATTAATTGGTGAGATGCACGGTTACACAGAGGGAGAGGGTAG GTGAAGTGGCTATATAAGAAGACAACTTGTTATGTTGCCTCTGAAGGGTTCAGTGAGTGAAGGGTTCAGTGAGTTGAGAC CAACAAAAAGGGCTTCTAGCTATTTAGCTTCTAGATTGTTGTTTTCACATCATCTGGTTGGCTGTTTTTGATTTCTAGCT TTCAGTTGAGTTCAGTTATAATAACTCCTCTTTCATCATCATCATCATGGCTTCTTCTAATAGACACTGGCCAAGCATGT TCAAGTCCAAGCCCTGCAACCCTCACCACCAATGGCAGCATCATGACATCAACTCCTCTCTCATCTCAACTGGTTGCCAC AGATCAACCCCTTACACTTCAGGTCAATTATTTCATATTTCTTCATGCTCATCAAAATCACTCAAATTAATCTCTTTCAC CACTTATTTTTAACATGCCTTGAAAAACCATTTCTAAATTCTAAATCCAAATGTTATTACACTTTTACGTGATCATCCAT GTATAAATAAATTAAAAATTATTGTTGTCACGTTTCGTTGGGATTCAGTCATTGTCACTTCGATTTGTAAAACGATCAGA CCATTAGATATTGATTGGAATTCATGAAAAGTATGTATACTTCATTTCAGGTTGTGAGGAGAGGAGTCCTGAACCAAAGC CTAGGTGGAACCCAAAGCCGGAACAGATTCGGATTCTTGAAGCAATATTCAACTCTGGGATGGTGAATCCTCCAAGGGAT GAGATAAGGAAGATCAGGGCACAGTTGCAAGAGTATGGCCAAGTGGGTGATGCTAATGTCTTCTACTGGTTCCAGAACCG CAAATCAAGGAGCAAGCACAAGCTCCGCCATCTCCAAAATGCAAAGAACCACAACCTCAACCCGAACAATGAACAACCGC CACAAAACCCTCCATCTCAGCACCCTCAAATCACTGCACCTTCATCATCCTCATCTTCTTCCTCGGAGAAATCTTCCCCA AAAGAACTCTTACCACCACCACCCAAGTTGTTCTCCATAGGGTTCTCTAACGTCACCGATGTGGTGCCCAACTCCCCCAC CGCCTCGGTGAACCAAACCTATTTTCATTCTCACAATGACACCACTACCCTTCTTCCACCACCACCACCACCTTCTCCAA CACCTGCCGAGTCTTTCTTCTTCCCAGTGCAACATCATGCTACCAACACCTTAACATCACAAGGGTTTTGCTTCTCTGAG CTTTCCAATGTGGTTCAAACTCAACCACACAGCAGTCAACACAACGTTGGTCCTCGTGCTAGTCTTTTGTTTGGTGAGTT TATGAGCCATAGTGGTGGTGCTGCTGCCTCAAAGAAAGATCATCAAGATCATGACAAGTCCTTGAAAATTATGCACCAAT CTCCTCAGCTTAATTTCTGTTTCCCTCCCACAACTGCTCCTCCTACAACTACTGTTGTAACTCCTACCACTACCACCGCA GTTCCTGTTTCATCCCTCATGACTTCTCATGTTCAAGGTACTAATTATTTTATGGTTTTGTCTATTATGGACGAGAAAAA AAATTGGTTCATAGGTTAAAATGGTTTCTCTGTAAGTTAATTTTCCTTACATCAAGAACATGTTATAAAACAAATTATAC AAAAAACATGATTCAGGGATAGTCTAGAGTTTAAAATAATCATCTATAGAAATTTCCCTTCTTTATTCCACTCATAGATT TGATCAAGTTTGGTTGTGCATGATATTCTGAAAATCTCCACAATGCATTATTCTCCCTCCCTCTTAATCATTCAATACAC TTTGCATTCTCCAAGTTGGACTTTATTACTCTTTCAAATAAAAAAATGGCAAGTTAGTGAGATTAATGTGAATTTGAGGT GGGTGCCATGGTTTTATGGTCACGTGTGCATGGCCTTTTTTCGTTTGAAATCGGCTTTAGTATTTGTTGACTTTAGTGGC TATTGCACTTGTGTGTGTTTGGAGTTGCACATGAGAGATTACTCGGTGTGTCTCAGGAACTGCCGATCCAGGTGTTACGG CGAGACCAACGGTGTTCATCAACGGTGTGGCGTTCGAGGTAGCGGCGGGACCTTTCAACGTGCGTGAGGCGTTTGGGGAT GATGCTGTTCTCATCCATGCTACTGGTCAACCAGTTTTAACCAACCAATGGGGTGTCACCGTCCAATCACTCCACCATGG AGCTTCTTATTATCTGGTGCGCACTCTAACACTCATATTAATGATGCATGTTGAATGATTTTTCGTTTATATGTAAGTTC ATACATTATTGATTTCTTTTTCATATATTTTATGACTTTGTTATTTTGCAGATATAGGAAATAGATAGCTGAAGGATCTA GTGAATGAAGGGGGTTTTAGATATGGTGTTTTTCTGATTTCTTTCCATGACTTTGTCACATTTCCTTCCATCTTTATCTT TGTCCCTATGTCTGTATTACTATTTCTATTAGGGTTATCATATCAATAGGTGTTTCAAGTCACTGCTCATGAGGAAGACT TAAGATAGATGGGCCAGTGTAGTTCCAAGTCTGGAATTCTTGACTTTGTTGACCAAATATGTAACTTTTTATCTTATCCT ATATTAGTTCAAAGAAAACTATCTTTATTACTATTTAGTAATTATATGGTGATCTTTGGCTTGTG
CDS sequence (LotjaGi6g1v0326500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTTCTAATAGACACTGGCCAAGCATGTTCAAGTCCAAGCCCTGCAACCCTCACCACCAATGGCAGCATCATGA CATCAACTCCTCTCTCATCTCAACTGGTTGCCACAGATCAACCCCTTACACTTCAGGTTGTGAGGAGAGGAGTCCTGAAC CAAAGCCTAGGTGGAACCCAAAGCCGGAACAGATTCGGATTCTTGAAGCAATATTCAACTCTGGGATGGTGAATCCTCCA AGGGATGAGATAAGGAAGATCAGGGCACAGTTGCAAGAGTATGGCCAAGTGGGTGATGCTAATGTCTTCTACTGGTTCCA GAACCGCAAATCAAGGAGCAAGCACAAGCTCCGCCATCTCCAAAATGCAAAGAACCACAACCTCAACCCGAACAATGAAC AACCGCCACAAAACCCTCCATCTCAGCACCCTCAAATCACTGCACCTTCATCATCCTCATCTTCTTCCTCGGAGAAATCT TCCCCAAAAGAACTCTTACCACCACCACCCAAGTTGTTCTCCATAGGGTTCTCTAACGTCACCGATGTGGTGCCCAACTC CCCCACCGCCTCGGTGAACCAAACCTATTTTCATTCTCACAATGACACCACTACCCTTCTTCCACCACCACCACCACCTT CTCCAACACCTGCCGAGTCTTTCTTCTTCCCAGTGCAACATCATGCTACCAACACCTTAACATCACAAGGGTTTTGCTTC TCTGAGCTTTCCAATGTGGTTCAAACTCAACCACACAGCAGTCAACACAACGTTGGTCCTCGTGCTAGTCTTTTGTTTGG TGAGTTTATGAGCCATAGTGGTGGTGCTGCTGCCTCAAAGAAAGATCATCAAGATCATGACAAGTCCTTGAAAATTATGC ACCAATCTCCTCAGCTTAATTTCTGTTTCCCTCCCACAACTGCTCCTCCTACAACTACTGTTGTAACTCCTACCACTACC ACCGCAGTTCCTGTTTCATCCCTCATGACTTCTCATGTTCAAGGAACTGCCGATCCAGGTGTTACGGCGAGACCAACGGT GTTCATCAACGGTGTGGCGTTCGAGGTAGCGGCGGGACCTTTCAACGTGCGTGAGGCGTTTGGGGATGATGCTGTTCTCA TCCATGCTACTGGTCAACCAGTTTTAACCAACCAATGGGGTGTCACCGTCCAATCACTCCACCATGGAGCTTCTTATTAT CTGATATAG
Protein sequence (LotjaGi6g1v0326500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSNRHWPSMFKSKPCNPHHQWQHHDINSSLISTGCHRSTPYTSGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPP RDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNAKNHNLNPNNEQPPQNPPSQHPQITAPSSSSSSSSEKS SPKELLPPPPKLFSIGFSNVTDVVPNSPTASVNQTYFHSHNDTTTLLPPPPPPSPTPAESFFFPVQHHATNTLTSQGFCF SELSNVVQTQPHSSQHNVGPRASLLFGEFMSHSGGAAASKKDHQDHDKSLKIMHQSPQLNFCFPPTTAPPTTTVVTPTTT TAVPVSSLMTSHVQGTADPGVTARPTVFINGVAFEVAAGPFNVREAFGDDAVLIHATGQPVLTNQWGVTVQSLHHGASYY LI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 402 | 402 | 3.0E-155 | – | |
| PANTHER | 1 | 402 | 402 | 3.0E-155 | – | |
| MobiDBLite | 39 | 62 | 24 | - | – | |
| SUPERFAMILY | 50 | 119 | 70 | 3.81E-12 | ||
| ProSiteProfiles | 51 | 116 | 66 | 10.511 | ||
| Gene3D | 53 | 118 | 66 | 4.7E-8 | – | |
| SMART | 53 | 120 | 68 | 6.8E-9 | ||
| CDD | 54 | 116 | 63 | 9.98568E-9 | ||
| Pfam | 55 | 115 | 61 | 1.5E-14 | ||
| MobiDBLite | 125 | 170 | 46 | - | – | |
| MobiDBLite | 144 | 162 | 19 | - | – | |
| Coils | 401 | 402 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0326500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…