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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0327400 |
| Transcript ID | LotjaGi6g1v0327400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT2G33860.1 Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein; Swiss-Prot: sp|O23661|ARFC_ARATH Auxin response factor 3; TrEMBL-Plants: tr|D3GBU7|D3GBU7_LOTJA Auxin response factor; Found in the gene: LotjaGi6g1v0327400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64249077..64254622) extracted from Lotus japonicus Gifu genome v1.2.
TTGGTTTTAACATTCACTACTACCACTACTACACAGTTTTTGTTCATGTAGCTTGTACCTTTCCTCTCTTTCCTCTCTCT CTCTCTTTCTCTTTTTCCTCTGCCACACATCACACCCAACAGTCTCAGCATTGCAGCAGCAACTGCAGCACTGCTGCTCC TGCTGCTTGCTTCAGCTCCCAGACAAGCAAAAGGGCCCAAAAGAAATTAAAAAAAAATGAGGGATAGAAAATGAATGAGT GAAGAAAGAAAGAAAGAGGGATATATAATAAAATCCCAATGAAAGCTTGATTTGAAACTACCCATTTTCTCTTCCCCTTC CAGTTCCAGCTAAATATAAAGTAGTAAAAGGAAAGAGACCCAAAAAAGAAACAAAAGGAAATGGGTGAGAGAACAGAAAG AGAGTCTCTTTCTTTTTGGAGTATTGGGTCATAGTCTCTTTTTAGCAATGCCAAAGTTACTCTACAACACTACCTCAGCC TCTCAGAAAATGCAGCAGCAGGCATGAAACCACTCATTCATATCTTCATCTTCATCTTCCACTCTCTCCTTTTCCAAACT GCTTCTTCTCCTTCTCCTTCATGATGGGGTTGATCGATCTCAACACTACAGAGGATGATGAAACTCCTTCTTCCGGTGGT GATTCTTCTTCTCCTTCCTCCCCTTCTCACTCTGGCATAAGCACTTCTCCTTCAGCCATGGCTCCTCCTCCACCTTCTGT GTGCTTGGAGCTCTGGCACGCTTGTGCAGGCCCTCTGATCTCTCTGCCGAAGAAAGGGAGTGTTGTTGTGTACATCCCAC AGGGACACTTTGAGCAGGCTCAGGATTTTCCGGTTACTGCCTATAATATCCCAACTCATGTGTTCTGTCGTGTTCTCGAT GTCAAGCTCCATGTAAGTGTTGGTTTGTTTCAGGGTTTTCCTATATGGGGATTTTGTTCTGTTTACTTGCTGAGAAAAAA AATGGGTTTCTGTTCAAGTTGAAAATTTGTGAATGACCCTTTTTGTTTTTTTGATTTTTCTGAGCAGGCAGAGGAAGGGA GTGATGAAGTGTATTGCCAAGTCTTGTTGATTCCTGAAAGTGAGGTGAGGTTTTATTTATGATTTATGAACATCTGATCT TACTTTTGTTCTGTTTGGGTTGGGAGAAATTTTTGAGAAAGAATGATATCTCTAAGCTTCTGAGATTGTCATGTCTCCAA ATACCATGCTAGAGAATCTAAGTATATATGATGTAATAGATTGAAGTGGATAAGCAATCTCTTTATTAAGATTGAAAGTG AAAGGAAATAGGCTTATTAAATGAAGTGTCTTTATTAGATGATTTTAATTTTGATTGTATTTGAACTTGGCCACTTGATT ACAGCAAGTGGAGAAAAACTTAGGGGAAGGGGACACTGATGCTGATGGTGAAGAGGATACTGAAGCTATGGTGAAGTCAA CAACACCTCACATGTTCTGCAAGACTCTGACAGCTTCAGACACTAGCACTCATGGTGGATTCTCTGTGCCTCGTCGAGCT GCTGAAGATTGCTTTCCTCCCCTGGTAATTACGAAATATGGCATGCATTGCTTTCTCTTGTCAAAGCCACCATGCTCATG TCACATGTTTCATTCATTTGGTTTATCTTATTCTAATTCTAGTATCCTACATTCAATATCTTATTAATGTTTTTAACTGT GATGGTCTTACTTGATTTAGAATTTGCCTTCTGTCATGATATCAAATTCTTGAAGTTATGCACTTGTTTACTTCTCTGGT AGCATTTTGAATTTAAATTCTATTGTTACTTTAGGACTACAGTCAACAACGACCTTCACAAGAGCTTGTTGCCAAGGATC TGCATGGCTTGGAATGGAAGTTTCGACATATATACAGGGGTATGTCACTTGTTAACATTGACATTGTAATATATTCATTG ACAATTTACTGCTTGGGGGTTTTATTTCCTGTCTTTGTGGGTGCAGGGCAGCCGCGCAGGCATTTGCTCACAACTGGGTG GAGTGCATTCGTAAACAAGAAGAAGCTTGTATCTGGCGATGCTGTCTTGTTTCTTAGGTATCTTGGCCTAAATTCTACCA AACATGAACTATTATTCGTAACAAGGACTAACCTTTAATAATTGAAACCAGGGGTGATGATGGGGAACTGAGATTAGGGA TTCGTAGGGCAGCTCAATTGAAAAGTGTTGGATCCTTTGCAGCTCCCTCTGGTCAGCATTTGAGTCCTGGCACTCTCATG GATGTTGCCAATGCCTTATCTTCAAGATGTGCGTTTAGTGCTTGCTACAATCCAAGGTATTTTTCTCTTTATTCACTTTA GTAATTTAGTTTTCCTCAGAATTTGAATATATGTGATTGTTAATGATATGATCTCCTTATCTATACCAAATGATATGATC CTCTCATGTATGTGATTGTCAATGTTGGTAAATATCTCTCTGTATCTTCATTGTCCATTCTTTCTGCCCATGGTATGTGC TTGATGCTTATATTACACTCTTTCTTTGTAGGGTCAGTTCTTCAGAATTCATCATACCTGTCAACAAATTCATGAAGAGC CTTGATTGTTCTTATTCTGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAGGATTCTGCAGAGAGAAGGTTTGTCAA TTGTCATGCTTATTTTTTACTAACACATAAACACTATAGGCTGCAAAAACTGATCACGGTGAAATTCTTTTGGCCAGATT CACTGGATTAGTTATTGGAATCAGTGATGTGGATCCTGTTAGATGGCCAGGATCAAAATGGAGATGTCTGCTGGTATGTC ACTGTGCTCCTTAAAACTTCCTTTATATTGTTATTACTAGTGTACTAGAGATTTTGCTTGAGGAGATGGCTGTCTATCTG TGTAACCTGCTAGGCTTGATATGTTAATGATTATCAGGGCTTCCCAGTTCATGTTGGGATACACAGCTAATGATTTTCTG GACTATGGATTAGTTCTACACTCCCATTTTCCATTTTGAGTTGGAATGTAATAGGGGATTAGTCCTAAATTTCCTCATGA TAACCAACAAATTTCTTATTTTAGGAACCCAATTTCTCCTCTTATTTTAATTTTATTTTCTCTGAATACCCTCTGCTATG CAGCCTATTGTTTTATTTTTTATATTTTAAATTCAAAATCATAGCCCAATTTCTATTATTTTGTGTCTTGGTGATTTATT TGTTGTGGTAGTAGAAGTCCATGGGCATGACTGGTATGAATGTTAGTCTGACTTAAATATGAATTCATAGATGAAGTTGT GTTCCTTACTAGTAGTGGGATACAGAAAAGTTGGCTTTTGATCCGAACTGATGGTACTATCTACGCAAATTTGATAGGAA TCTGTATCAGCCGAAGTTGACTTGTCTTTCAAAACTAATTAAAAACGAAAATTGTGTTCCTTACTCATGTTCTTCCTAGT ACTAGTGACATATCTCTTCTTTTAAAGTAGTTTGGAGAATTACTTAGTATACTTCTATTTTGGGCGTTAACTCATCCTTG TCATACTTCAAAAGATTGTGTTGTTCATAGTGTAATTATAACTTGTTATGTGGTCTCATTTCTGTAGTACACTATGACTG ATAGTAAGCATATATTTTTAACAGGTGAGGTGGGATGACATAGAAGCCGGTAGGCATAATAGGGTTTCCCCATGGGAAAT TGAGCCATTTGGTTCTGCTTCCAATAACTTGATGGCAGCTGGTTTGAAGAGGACCCGGATCGGAATGACTTCAACAAAGA TGGAATTTCCAGCTCCTAGTAAGTCAACCATATTCTTTTAATTTTTTTTTATGTGTGAGCAGTCTTACACATGCCACAAT ATTGAAAATTTGTTACTTTGACAGATGGAATTGGAACATCAGACTTTGGTGAATCGTTAAGGTTCCAGAAGGTCTTGCAA GGTCAAGAAATTATGGGTGTTAATACTCCCTTTGATGGTATTAATGCTCAGAGTCCCCGGTTTTATGAGCTAGGGAGATG CTATCCTGGTTCAAACTGTTCAGGGATTGCTACAACAGGAAATAGTATGAGAGTCCCACAAGTGACTTCTGATTTTTCCT GTAATGGCACAGGCTTCAGTGAATCCTTCCGATTCCCGAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGCCCACCATAT GGGGCCTTGTCTGTAGACGAGGCTCGTGGATATGGTCGCTTCGGTCGTTTTGATGGTTATCAACCACTTAGCTCCAGAAA TGGGTGGCCTGCCCAGATGCATGACAACACTTCACATTTGCACACATCAGTTACATCCGGGCAAGTGTCATCTCCATCAT CTGTGTTAATGTTCCAGCAGGCAATTAATCCAGTTTCAAACCGTGATTATAACATGGAGAGAGAGGGTAAAGTGCATTAC CAAGGTTCATATGCATCTGAAGTGAAAGGTGGAGCATTTGCACCTTCCCTTTCTGATAACCCTATTTTATCTGGAAGAGC TCAGGAAGGTGCAAACACTTTTGGTGTGTTTAGTAATTTTCATAGTCAGCTGGGCAGTTCAAGGCTCCATGATTCAGTTT CAGCAATGAGAAGCAGTCAAGAGTTGGTTCCCTCATGCAAAAGTGGCTGCAGACTCTTTGGTTTTTCATTAACTGAAGAC ACACACATTGCAAATGAAGAGACTGAGGCTTCTAATTCTGGACCTTCCTTTACTAGACTTGTTGAAGATGAATTCCACCC AGGCCTTTCACTCAGGAGTAAAGGGGTTGGGAGTAACTGCACAAAAGTAAGCTTAATTCTATATGTTATCATAGCATGCT TCACTCTGATTTTAGATATAACTTAATGATGATATTAATTTGTTTGCAGGGTGTGTTGCAGTATTGAACTGAGAATCATG ATGATGTGTGAAAGCAAGGTACTAGCATGAGAGAGGGCAGAAGAATGTGTCCATTGTTGCTCTTGTTATGTGCTTAGCTA TAATGAAATTTGTTATTATTTGCCAAAATTGGGTTATTTTATCTTAAGTGGCCACGAGACCAAATTAATGTGTTTGTGTA TTATTGTATTTTTATGCATACTCACTGTGTCCTATATGAGATGCATACTGTTGAGTAATGCTACTAAGGTAATCCTATGC ATGTTATCCATTTTCTGGGTCATATATGGAACTAAATAAACAACTCAAAGATATTTTGGCAGACTCATTCTATTTCTGCA GCCTTAAGGAATTTATAATTGTGCTATTATGAGATTGTTGTAGCTATATTTGACGGGCTAGTATGCACCAGTTAAAAATG ATGCAAAGGTACACCACTCTATTTTTACTTGCTGGAGCAAATCATCAATCTCCCTCCCATTCATCTTCTCTGTGATATAC TTCTCTATTGCCATCATTCTTTCATTTCTTTTCTAAGCATTGGAGTTCTCCGCCGCCATGGAAGGAGCTTCCATGAGCTA CATTCACTCCCCCTTCACCTCTGTAGCTTCTTATTTCCTTTCCTCTGTTTTCATTTCCTCTTTCCTATCTTTTGCTAGCC CATTCCTCTTATTCCACCATTCTTCC
CDS sequence (LotjaGi6g1v0327400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGGGTTGATCGATCTCAACACTACAGAGGATGATGAAACTCCTTCTTCCGGTGGTGATTCTTCTTCTCCTTCCTC CCCTTCTCACTCTGGCATAAGCACTTCTCCTTCAGCCATGGCTCCTCCTCCACCTTCTGTGTGCTTGGAGCTCTGGCACG CTTGTGCAGGCCCTCTGATCTCTCTGCCGAAGAAAGGGAGTGTTGTTGTGTACATCCCACAGGGACACTTTGAGCAGGCT CAGGATTTTCCGGTTACTGCCTATAATATCCCAACTCATGTGTTCTGTCGTGTTCTCGATGTCAAGCTCCATGCAGAGGA AGGGAGTGATGAAGTGTATTGCCAAGTCTTGTTGATTCCTGAAAGTGAGCAAGTGGAGAAAAACTTAGGGGAAGGGGACA CTGATGCTGATGGTGAAGAGGATACTGAAGCTATGGTGAAGTCAACAACACCTCACATGTTCTGCAAGACTCTGACAGCT TCAGACACTAGCACTCATGGTGGATTCTCTGTGCCTCGTCGAGCTGCTGAAGATTGCTTTCCTCCCCTGGACTACAGTCA ACAACGACCTTCACAAGAGCTTGTTGCCAAGGATCTGCATGGCTTGGAATGGAAGTTTCGACATATATACAGGGGGCAGC CGCGCAGGCATTTGCTCACAACTGGGTGGAGTGCATTCGTAAACAAGAAGAAGCTTGTATCTGGCGATGCTGTCTTGTTT CTTAGGGGTGATGATGGGGAACTGAGATTAGGGATTCGTAGGGCAGCTCAATTGAAAAGTGTTGGATCCTTTGCAGCTCC CTCTGGTCAGCATTTGAGTCCTGGCACTCTCATGGATGTTGCCAATGCCTTATCTTCAAGATGTGCGTTTAGTGCTTGCT ACAATCCAAGGGTCAGTTCTTCAGAATTCATCATACCTGTCAACAAATTCATGAAGAGCCTTGATTGTTCTTATTCTGTT GGAATGAGGTTCAGGATGCGTTTTGAAACTGAGGATTCTGCAGAGAGAAGATTCACTGGATTAGTTATTGGAATCAGTGA TGTGGATCCTGTTAGATGGCCAGGATCAAAATGGAGATGTCTGCTGGTGAGGTGGGATGACATAGAAGCCGGTAGGCATA ATAGGGTTTCCCCATGGGAAATTGAGCCATTTGGTTCTGCTTCCAATAACTTGATGGCAGCTGGTTTGAAGAGGACCCGG ATCGGAATGACTTCAACAAAGATGGAATTTCCAGCTCCTAATGGAATTGGAACATCAGACTTTGGTGAATCGTTAAGGTT CCAGAAGGTCTTGCAAGGTCAAGAAATTATGGGTGTTAATACTCCCTTTGATGGTATTAATGCTCAGAGTCCCCGGTTTT ATGAGCTAGGGAGATGCTATCCTGGTTCAAACTGTTCAGGGATTGCTACAACAGGAAATAGTATGAGAGTCCCACAAGTG ACTTCTGATTTTTCCTGTAATGGCACAGGCTTCAGTGAATCCTTCCGATTCCCGAAGGTCTTGCAAGGTCAAGAAATTCT TCCAAGCCCACCATATGGGGCCTTGTCTGTAGACGAGGCTCGTGGATATGGTCGCTTCGGTCGTTTTGATGGTTATCAAC CACTTAGCTCCAGAAATGGGTGGCCTGCCCAGATGCATGACAACACTTCACATTTGCACACATCAGTTACATCCGGGCAA GTGTCATCTCCATCATCTGTGTTAATGTTCCAGCAGGCAATTAATCCAGTTTCAAACCGTGATTATAACATGGAGAGAGA GGGTAAAGTGCATTACCAAGGTTCATATGCATCTGAAGTGAAAGGTGGAGCATTTGCACCTTCCCTTTCTGATAACCCTA TTTTATCTGGAAGAGCTCAGGAAGGTGCAAACACTTTTGGTGTGTTTAGTAATTTTCATAGTCAGCTGGGCAGTTCAAGG CTCCATGATTCAGTTTCAGCAATGAGAAGCAGTCAAGAGTTGGTTCCCTCATGCAAAAGTGGCTGCAGACTCTTTGGTTT TTCATTAACTGAAGACACACACATTGCAAATGAAGAGACTGAGGCTTCTAATTCTGGACCTTCCTTTACTAGACTTGTTG AAGATGAATTCCACCCAGGCCTTTCACTCAGGAGTAAAGGGGTTGGGAGTAACTGCACAAAAGGTGTGTTGCAGTATTGA
Protein sequence (LotjaGi6g1v0327400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMGLIDLNTTEDDETPSSGGDSSSPSSPSHSGISTSPSAMAPPPPSVCLELWHACAGPLISLPKKGSVVVYIPQGHFEQA QDFPVTAYNIPTHVFCRVLDVKLHAEEGSDEVYCQVLLIPESEQVEKNLGEGDTDADGEEDTEAMVKSTTPHMFCKTLTA SDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLF LRGDDGELRLGIRRAAQLKSVGSFAAPSGQHLSPGTLMDVANALSSRCAFSACYNPRVSSSEFIIPVNKFMKSLDCSYSV GMRFRMRFETEDSAERRFTGLVIGISDVDPVRWPGSKWRCLLVRWDDIEAGRHNRVSPWEIEPFGSASNNLMAAGLKRTR IGMTSTKMEFPAPNGIGTSDFGESLRFQKVLQGQEIMGVNTPFDGINAQSPRFYELGRCYPGSNCSGIATTGNSMRVPQV TSDFSCNGTGFSESFRFPKVLQGQEILPSPPYGALSVDEARGYGRFGRFDGYQPLSSRNGWPAQMHDNTSHLHTSVTSGQ VSSPSSVLMFQQAINPVSNRDYNMEREGKVHYQGSYASEVKGGAFAPSLSDNPILSGRAQEGANTFGVFSNFHSQLGSSR LHDSVSAMRSSQELVPSCKSGCRLFGFSLTEDTHIANEETEASNSGPSFTRLVEDEFHPGLSLRSKGVGSNCTKGVLQY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 41 | 41 | - | – | |
| MobiDBLite | 10 | 37 | 28 | - | – | |
| PANTHER | 41 | 678 | 638 | 0.0 | – | |
| PANTHER | 41 | 678 | 638 | 0.0 | – | |
| SUPERFAMILY | 147 | 260 | 114 | 8.24E-43 | ||
| Gene3D | 151 | 256 | 106 | 1.0E-44 | ||
| CDD | 152 | 254 | 103 | 3.66728E-23 | ||
| ProSiteProfiles | 154 | 256 | 103 | 13.437 | ||
| SMART | 154 | 256 | 103 | 2.0E-23 | ||
| Pfam | 154 | 255 | 102 | 9.9E-23 | ||
| Pfam | 281 | 361 | 81 | 4.3E-33 | ||
| Gene3D | 317 | 391 | 75 | 2.1E-34 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi6g1v0327400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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