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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0327400 |
| Transcript ID | LotjaGi6g1v0327400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT2G33860.1 Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein; Swiss-Prot: sp|O23661|ARFC_ARATH Auxin response factor 3; TrEMBL-Plants: tr|D3GBU7|D3GBU7_LOTJA Auxin response factor; Found in the gene: LotjaGi6g1v0327400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64249635..64254253) extracted from Lotus japonicus Gifu genome v1.2.
CTGCTTCTTCTCCTTCTCCTTCATGATGGGGTTGATCGATCTCAACACTACAGAGGATGATGAAACTCCTTCTTCCGGTG GTGATTCTTCTTCTCCTTCCTCCCCTTCTCACTCTGGCATAAGCACTTCTCCTTCAGCCATGGCTCCTCCTCCACCTTCT GTGTGCTTGGAGCTCTGGCACGCTTGTGCAGGCCCTCTGATCTCTCTGCCGAAGAAAGGGAGTGTTGTTGTGTACATCCC ACAGGGACACTTTGAGCAGGCTCAGGATTTTCCGGTTACTGCCTATAATATCCCAACTCATGTGTTCTGTCGTGTTCTCG ATGTCAAGCTCCATGTAAGTGTTGGTTTGTTTCAGGGTTTTCCTATATGGGGATTTTGTTCTGTTTACTTGCTGAGAAAA AAAATGGGTTTCTGTTCAAGTTGAAAATTTGTGAATGACCCTTTTTGTTTTTTTGATTTTTCTGAGCAGGCAGAGGAAGG GAGTGATGAAGTGTATTGCCAAGTCTTGTTGATTCCTGAAAGTGAGGTGAGGTTTTATTTATGATTTATGAACATCTGAT CTTACTTTTGTTCTGTTTGGGTTGGGAGAAATTTTTGAGAAAGAATGATATCTCTAAGCTTCTGAGATTGTCATGTCTCC AAATACCATGCTAGAGAATCTAAGTATATATGATGTAATAGATTGAAGTGGATAAGCAATCTCTTTATTAAGATTGAAAG TGAAAGGAAATAGGCTTATTAAATGAAGTGTCTTTATTAGATGATTTTAATTTTGATTGTATTTGAACTTGGCCACTTGA TTACAGCAAGTGGAGAAAAACTTAGGGGAAGGGGACACTGATGCTGATGGTGAAGAGGATACTGAAGCTATGGTGAAGTC AACAACACCTCACATGTTCTGCAAGACTCTGACAGCTTCAGACACTAGCACTCATGGTGGATTCTCTGTGCCTCGTCGAG CTGCTGAAGATTGCTTTCCTCCCCTGGTAATTACGAAATATGGCATGCATTGCTTTCTCTTGTCAAAGCCACCATGCTCA TGTCACATGTTTCATTCATTTGGTTTATCTTATTCTAATTCTAGTATCCTACATTCAATATCTTATTAATGTTTTTAACT GTGATGGTCTTACTTGATTTAGAATTTGCCTTCTGTCATGATATCAAATTCTTGAAGTTATGCACTTGTTTACTTCTCTG GTAGCATTTTGAATTTAAATTCTATTGTTACTTTAGGACTACAGTCAACAACGACCTTCACAAGAGCTTGTTGCCAAGGA TCTGCATGGCTTGGAATGGAAGTTTCGACATATATACAGGGGTATGTCACTTGTTAACATTGACATTGTAATATATTCAT TGACAATTTACTGCTTGGGGGTTTTATTTCCTGTCTTTGTGGGTGCAGGGCAGCCGCGCAGGCATTTGCTCACAACTGGG TGGAGTGCATTCGTAAACAAGAAGAAGCTTGTATCTGGCGATGCTGTCTTGTTTCTTAGGTATCTTGGCCTAAATTCTAC CAAACATGAACTATTATTCGTAACAAGGACTAACCTTTAATAATTGAAACCAGGGGTGATGATGGGGAACTGAGATTAGG GATTCGTAGGGCAGCTCAATTGAAAAGTGTTGGATCCTTTGCAGCTCCCTCTGGTCAGCATTTGAGTCCTGGCACTCTCA TGGATGTTGCCAATGCCTTATCTTCAAGATGTGCGTTTAGTGCTTGCTACAATCCAAGGTATTTTTCTCTTTATTCACTT TAGTAATTTAGTTTTCCTCAGAATTTGAATATATGTGATTGTTAATGATATGATCTCCTTATCTATACCAAATGATATGA TCCTCTCATGTATGTGATTGTCAATGTTGGTAAATATCTCTCTGTATCTTCATTGTCCATTCTTTCTGCCCATGGTATGT GCTTGATGCTTATATTACACTCTTTCTTTGTAGGGTCAGTTCTTCAGAATTCATCATACCTGTCAACAAATTCATGAAGA GCCTTGATTGTTCTTATTCTGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAGGATTCTGCAGAGAGAAGGTTTGTC AATTGTCATGCTTATTTTTTACTAACACATAAACACTATAGGCTGCAAAAACTGATCACGGTGAAATTCTTTTGGCCAGA TTCACTGGATTAGTTATTGGAATCAGTGATGTGGATCCTGTTAGATGGCCAGGATCAAAATGGAGATGTCTGCTGGTATG TCACTGTGCTCCTTAAAACTTCCTTTATATTGTTATTACTAGTGTACTAGAGATTTTGCTTGAGGAGATGGCTGTCTATC TGTGTAACCTGCTAGGCTTGATATGTTAATGATTATCAGGGCTTCCCAGTTCATGTTGGGATACACAGCTAATGATTTTC TGGACTATGGATTAGTTCTACACTCCCATTTTCCATTTTGAGTTGGAATGTAATAGGGGATTAGTCCTAAATTTCCTCAT GATAACCAACAAATTTCTTATTTTAGGAACCCAATTTCTCCTCTTATTTTAATTTTATTTTCTCTGAATACCCTCTGCTA TGCAGCCTATTGTTTTATTTTTTATATTTTAAATTCAAAATCATAGCCCAATTTCTATTATTTTGTGTCTTGGTGATTTA TTTGTTGTGGTAGTAGAAGTCCATGGGCATGACTGGTATGAATGTTAGTCTGACTTAAATATGAATTCATAGATGAAGTT GTGTTCCTTACTAGTAGTGGGATACAGAAAAGTTGGCTTTTGATCCGAACTGATGGTACTATCTACGCAAATTTGATAGG AATCTGTATCAGCCGAAGTTGACTTGTCTTTCAAAACTAATTAAAAACGAAAATTGTGTTCCTTACTCATGTTCTTCCTA GTACTAGTGACATATCTCTTCTTTTAAAGTAGTTTGGAGAATTACTTAGTATACTTCTATTTTGGGCGTTAACTCATCCT TGTCATACTTCAAAAGATTGTGTTGTTCATAGTGTAATTATAACTTGTTATGTGGTCTCATTTCTGTAGTACACTATGAC TGATAGTAAGCATATATTTTTAACAGGTGAGGTGGGATGACATAGAAGCCGGTAGGCATAATAGGGTTTCCCCATGGGAA ATTGAGCCATTTGGTTCTGCTTCCAATAACTTGATGGCAGCTGGTTTGAAGAGGACCCGGATCGGAATGACTTCAACAAA GATGGAATTTCCAGCTCCTAGTAAGTCAACCATATTCTTTTAATTTTTTTTTATGTGTGAGCAGTCTTACACATGCCACA ATATTGAAAATTTGTTACTTTGACAGATGGAATTGGAACATCAGACTTTGGTGAATCGTTAAGGTTCCAGAAGGTCTTGC AAGGTCAAGAAATTATGGGTGTTAATACTCCCTTTGATGGTATTAATGCTCAGAGTCCCCGGTTTTATGAGCTAGGGAGA TGCTATCCTGGTTCAAACTGTTCAGGGATTGCTACAACAGGAAATAGTATGAGAGTCCCACAAGTGACTTCTGATTTTTC CTGTAATGGCACAGGCTTCAGTGAATCCTTCCGATTCCCGAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGCCCACCAT ATGGGGCCTTGTCTGTAGACGAGGCTCGTGGATATGGTCGCTTCGGTCGTTTTGATGGTTATCAACCACTTAGCTCCAGA AATGGGTGGCCTGCCCAGATGCATGACAACACTTCACATTTGCACACATCAGTTACATCCGGGCAAGTGTCATCTCCATC ATCTGTGTTAATGTTCCAGCAGGCAATTAATCCAGTTTCAAACCGTGATTATAACATGGAGAGAGAGGGTAAAGTGCATT ACCAAGGTTCATATGCATCTGAAGTGAAAGGTGGAGCATTTGCACCTTCCCTTTCTGATAACCCTATTTTATCTGGAAGA GCTCAGGAAGGTGCAAACACTTTTGGTGTGTTTAGTAATTTTCATAGTCAGCTGGGCAGTTCAAGGCTCCATGATTCAGT TTCAGCAATGAGAAGCAGTCAAGAGTTGGTTCCCTCATGCAAAAGTGGCTGCAGACTCTTTGGTTTTTCATTAACTGAAG ACACACACATTGCAAATGAAGAGACTGAGGCTTCTAATTCTGGACCTTCCTTTACTAGACTTGTTGAAGATGAATTCCAC CCAGGCCTTTCACTCAGGAGTAAAGGGGTTGGGAGTAACTGCACAAAAGTAAGCTTAATTCTATATGTTATCATAGCATG CTTCACTCTGATTTTAGATATAACTTAATGATGATATTAATTTGTTTGCAGGGTGTGTTGCAGTATTGAACTGAGAATCA TGATGATGTGTGAAAGCAAGGTACTAGCATGAGAGAGGGCAGAAGAATGTGTCCATTGTTGCTCTTGTTATGTGCTTAGC TATAATGAAATTTGTTATTATTTGCCAAAATTGGGTTATTTTATCTTAAGTGGCCACGAGACCAAATTAATGTGTTTGTG TATTATTGTATTTTTATGCATACTCACTGTGTCCTATATGAGATGCATACTGTTGAGTAATGCTACTAAGGTAATCCTAT GCATGTTATCCATTTTCTGGGTCATATATGGAACTAAATAAACAACTCAAAGATATTTT
CDS sequence (LotjaGi6g1v0327400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGGGTTGATCGATCTCAACACTACAGAGGATGATGAAACTCCTTCTTCCGGTGGTGATTCTTCTTCTCCTTCCTC CCCTTCTCACTCTGGCATAAGCACTTCTCCTTCAGCCATGGCTCCTCCTCCACCTTCTGTGTGCTTGGAGCTCTGGCACG CTTGTGCAGGCCCTCTGATCTCTCTGCCGAAGAAAGGGAGTGTTGTTGTGTACATCCCACAGGGACACTTTGAGCAGGCT CAGGATTTTCCGGTTACTGCCTATAATATCCCAACTCATGTGTTCTGTCGTGTTCTCGATGTCAAGCTCCATGCAGAGGA AGGGAGTGATGAAGTGTATTGCCAAGTCTTGTTGATTCCTGAAAGTGAGCAAGTGGAGAAAAACTTAGGGGAAGGGGACA CTGATGCTGATGGTGAAGAGGATACTGAAGCTATGGTGAAGTCAACAACACCTCACATGTTCTGCAAGACTCTGACAGCT TCAGACACTAGCACTCATGGTGGATTCTCTGTGCCTCGTCGAGCTGCTGAAGATTGCTTTCCTCCCCTGGACTACAGTCA ACAACGACCTTCACAAGAGCTTGTTGCCAAGGATCTGCATGGCTTGGAATGGAAGTTTCGACATATATACAGGGGGCAGC CGCGCAGGCATTTGCTCACAACTGGGTGGAGTGCATTCGTAAACAAGAAGAAGCTTGTATCTGGCGATGCTGTCTTGTTT CTTAGGGGTGATGATGGGGAACTGAGATTAGGGATTCGTAGGGCAGCTCAATTGAAAAGTGTTGGATCCTTTGCAGCTCC CTCTGGTCAGCATTTGAGTCCTGGCACTCTCATGGATGTTGCCAATGCCTTATCTTCAAGATGTGCGTTTAGTGCTTGCT ACAATCCAAGTTCTTCAGAATTCATCATACCTGTCAACAAATTCATGAAGAGCCTTGATTGTTCTTATTCTGTTGGAATG AGGTTCAGGATGCGTTTTGAAACTGAGGATTCTGCAGAGAGAAGATTCACTGGATTAGTTATTGGAATCAGTGATGTGGA TCCTGTTAGATGGCCAGGATCAAAATGGAGATGTCTGCTGGTGAGGTGGGATGACATAGAAGCCGGTAGGCATAATAGGG TTTCCCCATGGGAAATTGAGCCATTTGGTTCTGCTTCCAATAACTTGATGGCAGCTGGTTTGAAGAGGACCCGGATCGGA ATGACTTCAACAAAGATGGAATTTCCAGCTCCTAATGGAATTGGAACATCAGACTTTGGTGAATCGTTAAGGTTCCAGAA GGTCTTGCAAGGTCAAGAAATTATGGGTGTTAATACTCCCTTTGATGGTATTAATGCTCAGAGTCCCCGGTTTTATGAGC TAGGGAGATGCTATCCTGGTTCAAACTGTTCAGGGATTGCTACAACAGGAAATAGTATGAGAGTCCCACAAGTGACTTCT GATTTTTCCTGTAATGGCACAGGCTTCAGTGAATCCTTCCGATTCCCGAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAG CCCACCATATGGGGCCTTGTCTGTAGACGAGGCTCGTGGATATGGTCGCTTCGGTCGTTTTGATGGTTATCAACCACTTA GCTCCAGAAATGGGTGGCCTGCCCAGATGCATGACAACACTTCACATTTGCACACATCAGTTACATCCGGGCAAGTGTCA TCTCCATCATCTGTGTTAATGTTCCAGCAGGCAATTAATCCAGTTTCAAACCGTGATTATAACATGGAGAGAGAGGGTAA AGTGCATTACCAAGGTTCATATGCATCTGAAGTGAAAGGTGGAGCATTTGCACCTTCCCTTTCTGATAACCCTATTTTAT CTGGAAGAGCTCAGGAAGGTGCAAACACTTTTGGTGTGTTTAGTAATTTTCATAGTCAGCTGGGCAGTTCAAGGCTCCAT GATTCAGTTTCAGCAATGAGAAGCAGTCAAGAGTTGGTTCCCTCATGCAAAAGTGGCTGCAGACTCTTTGGTTTTTCATT AACTGAAGACACACACATTGCAAATGAAGAGACTGAGGCTTCTAATTCTGGACCTTCCTTTACTAGACTTGTTGAAGATG AATTCCACCCAGGCCTTTCACTCAGGAGTAAAGGGGTTGGGAGTAACTGCACAAAAGGTGTGTTGCAGTATTGA
Protein sequence (LotjaGi6g1v0327400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMGLIDLNTTEDDETPSSGGDSSSPSSPSHSGISTSPSAMAPPPPSVCLELWHACAGPLISLPKKGSVVVYIPQGHFEQA QDFPVTAYNIPTHVFCRVLDVKLHAEEGSDEVYCQVLLIPESEQVEKNLGEGDTDADGEEDTEAMVKSTTPHMFCKTLTA SDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLF LRGDDGELRLGIRRAAQLKSVGSFAAPSGQHLSPGTLMDVANALSSRCAFSACYNPSSSEFIIPVNKFMKSLDCSYSVGM RFRMRFETEDSAERRFTGLVIGISDVDPVRWPGSKWRCLLVRWDDIEAGRHNRVSPWEIEPFGSASNNLMAAGLKRTRIG MTSTKMEFPAPNGIGTSDFGESLRFQKVLQGQEIMGVNTPFDGINAQSPRFYELGRCYPGSNCSGIATTGNSMRVPQVTS DFSCNGTGFSESFRFPKVLQGQEILPSPPYGALSVDEARGYGRFGRFDGYQPLSSRNGWPAQMHDNTSHLHTSVTSGQVS SPSSVLMFQQAINPVSNRDYNMEREGKVHYQGSYASEVKGGAFAPSLSDNPILSGRAQEGANTFGVFSNFHSQLGSSRLH DSVSAMRSSQELVPSCKSGCRLFGFSLTEDTHIANEETEASNSGPSFTRLVEDEFHPGLSLRSKGVGSNCTKGVLQY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 41 | 41 | - | – | |
| MobiDBLite | 10 | 37 | 28 | - | – | |
| PANTHER | 41 | 676 | 636 | 0.0 | – | |
| PANTHER | 41 | 676 | 636 | 0.0 | – | |
| SUPERFAMILY | 147 | 260 | 114 | 8.11E-43 | ||
| Gene3D | 151 | 256 | 106 | 1.0E-44 | ||
| CDD | 152 | 254 | 103 | 3.65636E-23 | ||
| SMART | 154 | 256 | 103 | 2.0E-23 | ||
| Pfam | 154 | 255 | 102 | 9.9E-23 | ||
| ProSiteProfiles | 154 | 256 | 103 | 13.437 | ||
| Pfam | 281 | 359 | 79 | 9.4E-31 | ||
| Gene3D | 315 | 389 | 75 | 2.1E-34 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi6g1v0327400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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