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LotjaGi6g1v0329200.1

Overview

Field Value
Gene ID LotjaGi6g1v0329200
Transcript ID LotjaGi6g1v0329200.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor; TAIR: AT3G15210.1 ethylene responsive element binding factor 4; Swiss-Prot: sp|Q40477|ERF4_TOBAC Ethylene-responsive transcription factor 4; TrEMBL-Plants: tr|A0A140WWF9|A0A140WWF9_LOTCO AP2/ERF; Found in the gene: LotjaGi6g1v0329200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:64395502..64397841) extracted from Lotus japonicus Gifu genome v1.2.

CCAAATTCCGACAAATCACTACCTAATTCATGCACTATAATTAATGAATTACCCCAATTTCCACGAATCAAAACGCTAGC ATAACAAAAATACTACTAGTATTAATTAATGTCAATTAACACGCGCGTGAAAGTGTGTGAGAGAGTGAATTCAATTCAAA GTTTCAAAGCCAATGAATGAAGGAAAGAAAGAAAAAATTGAAAGAAAGGTGTGCCCGCAGCCGTAGGATGATGATGAGAA CGAGACCAACTCCTTTGTCTGCTGCCTACACAACCCACATGCCAAGAGAGAGACTAATTTACCAATTTGCCCTTCTCCCC AGCGCAGTCAAACTCATCGTTGACTGTGTTCCCCTCTCTCTCTTTTATGGACACATCATTCATCATCCATGGCCCCATAC CATTCACATGATGCCATGCCCCCCATCTATAAAACACCAACCCTCACCCCTCACTTCCATGCGTCTCACCCCGCACCCAT TTTCTCCCTTCATAGTTTATACACTGCTTCTCTTCCTGCAAAAACAAAAAAAAAAACTACATCAAAATTAATATTTACGT GTTGTAATTATCATTATTATGGCGCCGAGGGATAAGACCAACGCCGTGAAGGTGAGCGGAAACGGAAACGGTAACGGCAA CGGCGGCGTTAAGGAGGTGCATTTTAGAGGAGTTAGAAAGAGGCCATGGGGGAGATACGCTGCCGAGATCCGAGATCCCG GCAAGAAGAGCCGCGTCTGGCTCGGAACATTTGACACGGCGGAAGAGGCGGCGCGTGCATACGACACCGCCGCAAGAGAG TTTCGCGGCCCCAAGGCCAAAACCAACTTCCCTTTCCCTTCAGACAATGTCAAGAACCAGAGCCCGAGCCAGAGCAGTAC CGTTGAGTCTTCCAGCCGCGACCGTGACGTTGCTGCTGCCGCTGATTCATCGTCTCTTGATCTCAACTTGGCACCTTCCG TTCGGTTTCCTTTCCGTCCCCAGTTCCCGCAGATGCCGGCGGCGAACCAGGTGCTGTTCTTCGACGCGATTCTGCGTGCC GGCATGGTGGGTGGTTCCCCTGCCTCCCAACGCTACGGTTTCGATTTTCACACCTACAATCATCCCGTGGCGGCGAGTGA GATCCAGGCGGTGGCCGGAGCCCAGAGCGACTCAGACTCGTCCTCGGTGATCGATCTGAACCACTATGAAAGCGGTGTTG TTATAAAAGCTGGTGGTAGAAACTTTGATCTCGACCTTAACTACCCTCCAATGGAAGACATGGCTTGAAGATGAACCAGA TTAATTATCTGATCGTTGAAGTTTGATTCTATTTTTCCGGATTAAGAAATTCTCTTTAGTTTTATAAGTAGAGAAAATAG CAACATCCGATAAAGAAAGAAAAAGAAGGAAGCACAAGCACAAGCACTGTGTGTGAATACATAGGTGATCATGGATCATC TGAAATTTTTTTGCAACAGAGAAACCACCGGTTTCAATCTGTTGTTCGAAATCATGACGAAACTGTTACCCAGGCCAGTT TTTTTTTAATTAATTACCTAAGTTGTATTAGGAATGGTTTTGATTTGAAGCTCATTTTATATGAATGAAATTAACACGAA AACTTTGCACTAATTGTGTCTGATCATCTGATTAATTGTGTCTGTATTTTTTCCCCAGTTCTTATGTGAAATTTTGGATT TGTGTTATGTTGTTGCCTGGAAGTGGACGGAAAATTTAAGGATTGAAGGAACAAGGAGAGGTGACGTGGAAGAAACGTAA TTGATGGTATTGGTCGTTGATTGAGGGGTTGATTGATCCGCCGCCACGTGACAGGTGTTGTTTCGTGAAGGGTATAGGTG ATACTACTCAATTGTCCATTTGTGAGTTGGGTAGTAGAAGACAGGTGCTGAGGTGCACTACTGCTGTGTTTGGTTTCAAA GAAAAGGAAAGATTGAAGATGGATGAAAGAAAATACAGGAAAACGAGTTAGGTATTGCGGTGCATAACCACTTTTGGTCA TTGAATATTTAGTAATTTAATGAAATGCCAAGATCTATGGTGTACTATGTTTGTTAATAGTAGATTCTTGCTAAATTGTA ACCTCATTCCCATTCATGGATTTACCCAAACACTACACCCTCGCCGCTTCCGGCCTCCCCCCTCCATTGTATCATAACAA TGACGTGACCAAGGGCACGGTGGTCAAGGCATTGTGAAGGTTATTGGGTGCGGTGGCTTTTGGGTGTATTTTGTATGTGC TGAGGGTTAGGTCTTCTAACATGTTTTTTCTTACACAATACTTAAATATAAGACATTACTTCAACCGAATCAAATCTTTA CCACATGAATCAATCACTAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0329200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGCCGAGGGATAAGACCAACGCCGTGAAGGTGAGCGGAAACGGAAACGGTAACGGCAACGGCGGCGTTAAGGAGGT GCATTTTAGAGGAGTTAGAAAGAGGCCATGGGGGAGATACGCTGCCGAGATCCGAGATCCCGGCAAGAAGAGCCGCGTCT GGCTCGGAACATTTGACACGGCGGAAGAGGCGGCGCGTGCATACGACACCGCCGCAAGAGAGTTTCGCGGCCCCAAGGCC AAAACCAACTTCCCTTTCCCTTCAGACAATGTCAAGAACCAGAGCCCGAGCCAGAGCAGTACCGTTGAGTCTTCCAGCCG CGACCGTGACGTTGCTGCTGCCGCTGATTCATCGTCTCTTGATCTCAACTTGGCACCTTCCGTTCGGTTTCCTTTCCGTC CCCAGTTCCCGCAGATGCCGGCGGCGAACCAGGTGCTGTTCTTCGACGCGATTCTGCGTGCCGGCATGGTGGGTGGTTCC CCTGCCTCCCAACGCTACGGTTTCGATTTTCACACCTACAATCATCCCGTGGCGGCGAGTGAGATCCAGGCGGTGGCCGG AGCCCAGAGCGACTCAGACTCGTCCTCGGTGATCGATCTGAACCACTATGAAAGCGGTGTTGTTATAAAAGCTGGTGGTA GAAACTTTGATCTCGACCTTAACTACCCTCCAATGGAAGACATGGCTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0329200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAPRDKTNAVKVSGNGNGNGNGGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAAREFRGPKA KTNFPFPSDNVKNQSPSQSSTVESSSRDRDVAAAADSSSLDLNLAPSVRFPFRPQFPQMPAANQVLFFDAILRAGMVGGS PASQRYGFDFHTYNHPVAASEIQAVAGAQSDSDSSSVIDLNHYESGVVIKAGGRNFDLDLNYPPMEDMA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31677
1 226 226 6.6E-75 –
PANTHER
PTHR31677:SF94
1 226 226 6.6E-75 –
MobiDBLite
mobidb-lite
1 27 27 - –
Gene3D
G3DSA:3.30.730.10
27 86 60 1.2E-31
IPR036955
SMART
SM00380
28 91 64 4.0E-40
IPR001471
ProSiteProfiles
PS51032
28 85 58 23.96
IPR001471
Pfam
PF00847
28 77 50 1.8E-13
IPR001471
SUPERFAMILY
SSF54171
28 86 59 1.57E-22
IPR016177
CDD
cd00018
28 85 58 2.75819E-31
IPR001471
PRINTS
PR00367
29 40 12 4.6E-11
IPR001471
PRINTS
PR00367
51 67 17 4.6E-11
IPR001471
MobiDBLite
mobidb-lite
76 113 38 - –
MobiDBLite
mobidb-lite
86 107 22 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0329200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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