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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0329300 |
Transcript ID | LotjaGi6g1v0329300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ethylene-responsive transcription factor, putative; TAIR: AT1G28360.1 ERF domain protein 12; Swiss-Prot: sp|Q94ID6|ERF81_ARATH Ethylene-responsive transcription factor 12; TrEMBL-Plants: tr|I3T849|I3T849_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0329300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64419108..64420551) extracted from Lotus japonicus Gifu genome v1.2.
AGTAGTTGTAATAATTAATATAATTAATATTTCTTCAAAAAAATGTCAGGCGCCGTTCAGCAACGCCGTACACGACATCA GTAGGGCTAACGTCACACTACCCATCGCCCCCTTCCAACCCCACACGTCTCATCAGGCGGCGGCCCTCCCTCCTGGTAGG TCCCACAATAACTTTTGATCCAACCATCACCACCGTCCAATCAACAATCAACGGCTCTCATCGATTCTATCCAAATTTTC CTCGCCGCTCGTGTGTCGTGTATTGTATATATAAACCAAAAGGCAAACCACAAAAGTGAAGAACAACGGAGTAGTAGGAA GAAGGTGGTGCCGGCTAGCCGACAATTACGGGAGGTTACGTGGGTCCCTCCACCATTATATACCCCATCACAACACTCTT GAGTTTCTTCACTCCCTCTTTCTTTCTGTTTTTCTCTTCTCTGTTTTTGTTGCTTCCATCCATGGCTTCTTCATCTTCTT CAGCCTCTCGTGAAGGACACTACAGAGGAGTAAGGAAGCGACCATGGGGACGCTATGCAGCTGAGATTCGCGACCCGTGG AAGAAGACACGTGTCTGGCTTGGCACATTCGACACTCCAGAAGAAGCTGCCCTAGCCTACGACGGCGCCGCTCGTTCCCT GCGTGGAGCCAAGGCCAAAACCAACTTCCCTCCAGCTCCGCTCGCTGCTGGTCTCTGCCTCGACCTCAACGCCCCCTCCT CTGATCTCCACCACCACCGCTGGCCCTCCGTCCCCTCCCGTGGCCTTGCCCTCAGTGAGTTCCTCCACACCGGCGTCCTC AAAGACATCAACCCGCCTCAGCCTCCGCCAGTCACCGTCGCTGTCAGCGCCCCTTACGTCACCGTCGCTCAAGTTGCAGA ACCTTCCCCTACGGCGTCGTTTCTTGGACTCATCCGGCGTGGAATCCCCATCGACTTGAACGAGCCTCCACCACTGTGGC TTTGAACCGTGAAAATAATGAGTTAGCGTAACTGAGATCTATGTATCGTAGGCTTTGAACGGCGTCGTTTTGCAGTTTTC TAATTAAATTGTGTTATTTTCCCTCTTGAATCTTCATGGTCATGTTTCATTAGAGATGAACACGTTTGTTATAATCAATC ATAGAGGGAGCTTCTAGTTCTATCTGTCTATGTGAGACTATCTAACATCATTGTAAATATAATTATTTATTTTCTATTTT CATGTCTATGCTTATTTCCGTTAAGATAGTACTGTACGTTAAAACATCATTTTCCCGTCGCATTATTTGATATATAGGTT AGGCTCGTGCTATATAGATACATAGATTAATGGTGGTGTTTGAAATAATAATGTTGGTTGTTTATCTTTGTACCAAAAGT GTGGTAGCGTTTTGCGGTGTGCTTTTGGGATGTTGGGCGGCGGGGTAGACAGCCGACGAGGGATTGACACCCGTTGATGT GTTT
CDS sequence (LotjaGi6g1v0329300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTTCATCTTCTTCAGCCTCTCGTGAAGGACACTACAGAGGAGTAAGGAAGCGACCATGGGGACGCTATGCAGC TGAGATTCGCGACCCGTGGAAGAAGACACGTGTCTGGCTTGGCACATTCGACACTCCAGAAGAAGCTGCCCTAGCCTACG ACGGCGCCGCTCGTTCCCTGCGTGGAGCCAAGGCCAAAACCAACTTCCCTCCAGCTCCGCTCGCTGCTGGTCTCTGCCTC GACCTCAACGCCCCCTCCTCTGATCTCCACCACCACCGCTGGCCCTCCGTCCCCTCCCGTGGCCTTGCCCTCAGTGAGTT CCTCCACACCGGCGTCCTCAAAGACATCAACCCGCCTCAGCCTCCGCCAGTCACCGTCGCTGTCAGCGCCCCTTACGTCA CCGTCGCTCAAGTTGCAGAACCTTCCCCTACGGCGTCGTTTCTTGGACTCATCCGGCGTGGAATCCCCATCGACTTGAAC GAGCCTCCACCACTGTGGCTTTGA
Protein sequence (LotjaGi6g1v0329300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSSSSASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPLAAGLCL DLNAPSSDLHHHRWPSVPSRGLALSEFLHTGVLKDINPPQPPPVTVAVSAPYVTVAQVAEPSPTASFLGLIRRGIPIDLN EPPPLWL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 8 | 167 | 160 | 8.4E-63 | – | |
PANTHER | 8 | 167 | 160 | 8.4E-63 | – | |
Gene3D | 12 | 71 | 60 | 8.9E-31 | ||
SMART | 13 | 76 | 64 | 6.5E-35 | ||
Pfam | 13 | 62 | 50 | 4.1E-13 | ||
CDD | 13 | 72 | 60 | 2.61199E-31 | ||
SUPERFAMILY | 13 | 70 | 58 | 3.2E-22 | ||
ProSiteProfiles | 13 | 70 | 58 | 22.721 | ||
PRINTS | 14 | 25 | 12 | 4.7E-11 | ||
PRINTS | 36 | 52 | 17 | 4.7E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0329300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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