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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0330700 |
| Transcript ID | LotjaGi6g1v0330700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pollen Ole e 1 allergen/extensin; TAIR: AT2G33790.1 arabinogalactan protein 30; Swiss-Prot: sp|P93013|AGP30_ARATH Non-classical arabinogalactan protein 30; TrEMBL-Plants: tr|A0A1J7FUR9|A0A1J7FUR9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0330700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64592756..64596067) extracted from Lotus japonicus Gifu genome v1.2.
GAAATAAATGCAGAGTCCATATAATTTAGTGAAATTTACATAGATTTTATCTACTGAAATAAATGTTGTTAACAAAATAA AAATAAAGTTAGCTTGTGATCTCAGCAAATCTGGTCCCTTCCCCGGATCCCCGTTTGGCTCTTCCCCACATAATAGCCGT TTCCCTATAGCAATGCAGACCAATTAATTAAATTGTTTTCTTTTCAATTTTTCTTTTACATAAAATAACAAAAAAACAAA AAACACTTCACTTGAACTCACAGCAGCTTCAGTTCCTATAAATCACCACACCCTGTCTATCTCACACACTGCACCACCAC CAATCCACCCTCACTTCTCTCTCTTTCTTCTACACTTGCAGAGAGCAGCAATGGCTAAAACCCTAGCACTATTCCTGCTT TTAGCTACTTCCTTCACTGTGTTTGCACAAGATCAAGAAGTCCTTAACCCTTCCACCATTCCCTCCCTTGTAGCACTTCC ACACAACGTTCCACTTCACCCACCAGTTGCAGCTCCACCACCTAACTATCACAACCACCCTGTTGCTCCGGTTCACCCCC CAACACACTCACCTATTCACCCACCGGCTCACGCCCCACACCACCACCACCACCACCACCCACCGGCTCCGGCTCCTGCT CCTATTAAGCCTCCAGTTCACCCTCCCACCTCTGTCCCAGTTAAACCCCCCACCGGCCACCACCACCACCACCATCCTCC TTCCCCTGCTCCTGCTCCAGCCCCTGCACACCACCATTACCCTCCCACCCCTGCTCCTGTTCACCCACCTGTTCACCCCT TCCCTAGAAGCTTTGTTGCTGTTCAAGGTGTTGTCTTTACCAAGTCCTGCAAATATGCAGGGGTTGACACCCTCTTGGGT GCCACTCCCATTTCTGGTTAGTCTCCTTAACTTCAAAAAAGCTTGTTAAAAAAATTAGAAATTGAAACTTTACCAAAAGT ACCTACATTTTTTAAATATCCCCTGCATTTAACACACAAACTGTGTTCAGTCACCTAACAAATTTCTCTTTGTTATCTAA TGCTATTTCCAGCTTATGTCCTTATCTTCATTTATCTGTCTATATGCTGTTGTTTTCTAATAGATCTAACAAATTGGACA AGTGCATTACTTGCATTCCTCTGTATTTTTATTATTGTTTTTTCTGTTTCTCTCTTGTGGAGCTAGCTTGTACTGAGATC TGTTTTCTGCATGTATTCCATTTTTTACTGTGAAAAATAAGAGGTAAATCACAAAAATCAGAAGCAGAACTTAAGTTTAG ATTTTTCCTAGAATTTATTTAACACATTCCAGCTTTCAGGCTTTCAGAATCATTATCTGTGTCTCTACTGTGTTAAATAT TACTAAAACATGTTTCAAGGTTTTTTAAAATACATCCCAATTTTTAGAAAGACACCTCGAGTCCCTGAAAAAAAAAAGCA ATTCCAGAAGACCAGTATATTGTTATTTTCAGTCTCGAAGTTTTATTTTAGTTATTTAATTTTGGTTTCAATCCCCAGAA AACATTTGAATTTCAAACAATTAGAGATGTATTAAAAAATACACGTAGCTTTTTGTTTATATATAAACATGATTTATTAT TAATAAATTAAATTCTATATATAGTACAGTTTTGTAACAAAAAAGGAAGCATGGTACAGTTTTTTGTATGAAATATTGAC ATTGACCCGTTGTAGCACAGTGTACAGTAGCAGTAGGTAGCTAGTAGTATAAAGTTGGCATTATAGATAGCTGCATGTTT CGAGGGTTTATTGTCTGTGGGACCCTTTTGCATGCGAGAAAGATGAATCATGAAACTCAACTCGCTCTTTGATTGATGAT GGCTAAACGACAACTCACGCGTGTCTTTTTCAAAACCAAACGCAGGTGCCGTTGTGAAGCTCGAATGCAACAACACCAGG TACCGATTGGTTCAGAAGGTGAAGACTGACCACAACGGCTACTTCTACTTGCAAGCTCCCAAGACCATCACCACCTTTGG GGCCCACAAATGCAAGGTCTTTTTGGTCAGTGCACCCGCGGGCCTCAAGCCCTCCAATTTGCATGGTGGTGTCATTGGGT CTGGGCTCAGGCCCGTCAAGCCTTTCCTTTACCAGAAGCTTCCTTTCCTGCTCTACAATGTTGGGCCTCTCGCGTTTGAG CCCACCTGCCCAGGCCCACATTAAACTGATTAAGCTGTGTTTGGTTGGTTTGTTTTGCCTTTTTATGGATGAATGAATGA ATAGCTTTATTGTCTCCATTTCTAGTATTTTTCTAGTGTTTCGAGGTGAGGGTGTGGGTCCTTGAACTTGTAGTAATGAT TTAGCTTTATGCTTGAATTAATTATGTACAATAAGTTTGACTGTTATAGCTTTATGCCAAAACCTGCTGTGCTGATCCAT TTTGATCATCTTATTTATAACTAATTATTAAATAATCCTCCAAGCTTAAGCATGATGCCATTAATTATGGAAGGTAATAA TAGTAACTTAATTTTTGCATGGGACGTGTAAGGCACCTTTACTAGATAGAGAGATTGCAATGAGAAGGACAATGGGATCG TAACGGATAAGAATAAGATGCTATGGGAGTTGGGACCCATAAAATAAAGACTCCGTAATCATATTATAATGTGCAATCTT ACTTTGTCCTCATCAAGCATTGGATTCCTGTCTACTATTCAGGACAATATGATCATGGTCGTGGGTCTTTTACACACGCA ACATCATGGATGATTATGGACTGGGACTTTTCTCTTGGCTTTTATTCGACTCATAATTGTGGATGTTCAACGCTGCGTGA TAATGGAAGATTTTGTATACTTGCGAACAAGTTAAATGTTTGTCCTAAGAAAAGAAGGTACCAGAAAAGAAAACAAGTGA AAACTAAAGAAGGGAACAATACTTATTACAGTGTTAGTATCTGATTTTCTGGACCAATCATTTTTATATTGCTGAGGGTT TTTGTTTTTCTTGTTTGTTCTACGGATGCCAAGCCAGAGTTAAACACTTAAACCGAAATTGCGAGACACATACAACATAA AAAATTTGTCTCGTGTTTTTAAAAACCATAAGACAAATCTAAAAGACACTTGAAAAATGGAGGAATACACAAGATATTGA TACATAACCTGATGGTGTATCTGGATGAGACAAGGATGGAACAGAGAGGTTGAGTGCGGCAGCGGGCAGCAAGACCAAAA TAATTGTGAGTCGCAAAGAAATTGGAAATGATTAAAAGAAGAGCAGCATAGCTTTGCTTATGAGTGATCCAGTATTGGAG CGGTTATTGTTAGTGGGGTTAGCAATTTTCGG
CDS sequence (LotjaGi6g1v0330700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAAAACCCTAGCACTATTCCTGCTTTTAGCTACTTCCTTCACTGTGTTTGCACAAGATCAAGAAGTCCTTAACCC TTCCACCATTCCCTCCCTTGTAGCACTTCCACACAACGTTCCACTTCACCCACCAGTTGCAGCTCCACCACCTAACTATC ACAACCACCCTGTTGCTCCGGTTCACCCCCCAACACACTCACCTATTCACCCACCGGCTCACGCCCCACACCACCACCAC CACCACCACCCACCGGCTCCGGCTCCTGCTCCTATTAAGCCTCCAGTTCACCCTCCCACCTCTGTCCCAGTTAAACCCCC CACCGGCCACCACCACCACCACCATCCTCCTTCCCCTGCTCCTGCTCCAGCCCCTGCACACCACCATTACCCTCCCACCC CTGCTCCTGTTCACCCACCTGTTCACCCCTTCCCTAGAAGCTTTGTTGCTGTTCAAGGTGTTGTCTTTACCAAGTCCTGC AAATATGCAGGGGTTGACACCCTCTTGGGTGCCACTCCCATTTCTGGTGCCGTTGTGAAGCTCGAATGCAACAACACCAG GTACCGATTGGTTCAGAAGGTGAAGACTGACCACAACGGCTACTTCTACTTGCAAGCTCCCAAGACCATCACCACCTTTG GGGCCCACAAATGCAAGGTCTTTTTGGTCAGTGCACCCGCGGGCCTCAAGCCCTCCAATTTGCATGGTGGTGTCATTGGG TCTGGGCTCAGGCCCGTCAAGCCTTTCCTTTACCAGAAGCTTCCTTTCCTGCTCTACAATGTTGGGCCTCTCGCGTTTGA GCCCACCTGCCCAGGCCCACATTAA
Protein sequence (LotjaGi6g1v0330700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKTLALFLLLATSFTVFAQDQEVLNPSTIPSLVALPHNVPLHPPVAAPPPNYHNHPVAPVHPPTHSPIHPPAHAPHHHH HHHPPAPAPAPIKPPVHPPTSVPVKPPTGHHHHHHPPSPAPAPAPAHHHYPPTPAPVHPPVHPFPRSFVAVQGVVFTKSC KYAGVDTLLGATPISGAVVKLECNNTRYRLVQKVKTDHNGYFYLQAPKTITTFGAHKCKVFLVSAPAGLKPSNLHGGVIG SGLRPVKPFLYQKLPFLLYNVGPLAFEPTCPGPH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| PANTHER | 2 | 271 | 270 | 1.3E-70 | – | |
| PANTHER | 2 | 271 | 270 | 1.3E-70 | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 19 | 4 | - | – | |
| Phobius | 20 | 274 | 255 | - | – | |
| MobiDBLite | 46 | 138 | 93 | - | – | |
| MobiDBLite | 46 | 71 | 26 | - | – | |
| MobiDBLite | 72 | 86 | 15 | - | – | |
| MobiDBLite | 87 | 105 | 19 | - | – | |
| PRINTS | 94 | 117 | 24 | 4.7E-6 | ||
| MobiDBLite | 118 | 138 | 21 | - | – | |
| Pfam | 151 | 227 | 77 | 4.9E-17 | – | |
| PRINTS | 160 | 184 | 25 | 4.7E-6 | ||
| PRINTS | 214 | 231 | 18 | 4.7E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0330700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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