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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0332600 |
| Transcript ID | LotjaGi6g1v0332600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain-containing protein; TAIR: AT4G28500.1 NAC domain containing protein 73; Swiss-Prot: sp|O49459|NAC73_ARATH NAC domain-containing protein 73; TrEMBL-Plants: tr|A0A151SAN6|A0A151SAN6_CAJCA NAC domain-containing protein 8; Found in the gene: LotjaGi6g1v0332600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64750382..64754788) extracted from Lotus japonicus Gifu genome v1.2.
TATAAAACTAGTTATTTTAAATTTAAGAAAAAATCGTGCTAGCTAGCTAGGCCACATTTATTCCTTGTTTACAAGCGTAT ATAGACGAGCATAGCCAAACGTGCCCTGCAAGTAACCTTTTCCTATATGTTGAGTTGAGCCTTTCATATGTTTCTTTTAT CGGCTATAATAACCCTTAATTGGTCCTCTATCGATCTCTTCTTTTCTTCGTGAGCAAGAACCAGCAGTTTGGGATATCAG GAACTATTCAATCATTGAATCAGAAGAAGGAAAAGTAAGAAATTGCTATGGTAGAATATGAAATTCTCTCCCTTTCAGCA CAACAAGTATAACTAAAATGATCCAGGATATAAAAGTGTCCCAAAAAGGCACTAGCTTTACCTTTCTTCACCCTTTCTCA TCTCTATTTTGCTGATTACTATTTGTTTTTATTACTAGAAAGCTGATATTGTAGGAGGAAGTAGAAGCGAAAAGGGTTCT GAAAATTTGTGGTATATATCATTAGAAGTTAACAAAGAAAGATGAAATGGTGCAATGACTCTGATAAGGAGAAGGGCAAT AAATATTTAATCACGCCCACGAATACTCCTAAAGCTATCATCAATCTCACAGAAGGAATTCATACAATAAAATGCCCCTC ATGTAGCCATAACACGGATGTCAGAGATCAGGTACTAATTAATTTAAGGTTTTTTGATTCTCACATAACATATAGTAATT CCTTCTCTTGTGTTTATGCTTAATTTTAGTTCATAACAAGTTGATTTTGTTCATGCACCAATTTGATAGGGTGGAATTCA TGGATTGCCGGCTGGAGTGAAGTTTGATCCAAATGACCAAGAAATACTGGAGCATTTGGAGGCCAAGGTAGTGTCTGATG TGTGCAAGCTTCATCCCCTTATTGATCAGTTCATACCAACGCTTCAAGGCGATAATGGAATCTGCTATACACACCCAGAA AAGCTACCAGGTGTTGATTTTTTTTTTCCCTTACTTAAAATAGTTTAGTTGAGACATTGCATATGCATGTTCTAGCCATC GTTGAAATTATCATTTAATGGGAGGCACATCTTGATATATATGCGTGCGGCACCACATGTGTGAAATTAATTGTTTTAGA AATGAAAATGTTTTTTTTCTTTCAAAAGGTTCAAAGTATAAGGCGGTTTAGAATCACATCAGAACATTTATGCTCTCTAA GTGGGTTGGCAATGACTGCCAAACTCAATTGTGGCGTCATAGCTTACTTAGCTTACTTTAGGCATGCTCAAGTGAATTGT AAATGTTAGTTCTTAATTATTTTCCACCAATATTCGTCAAATTTCAAACATGACACCAAATAGAAGGTTTTTGTCGGCTA ATTCTATCAGCTCAAAAAAGAAGGTTGCTACCTTGTCATTCTTTTGATGGGGGCTTTCTCAACCTCTTACCGGATATAAA GATACAAATAAGAGTTCCTAATTCATAGTTAAGAATTCCTGATTCATAGTTATTATAACTATACCTACTCAAGTCCACTA AGCTAAATGCTTAGAACTTGAAGAGTTGTGAACCTCTCGGGTCCCAAATACCTAAATCCGGCCATAGGTAGCACGACAAA AAGGACAGCTTAGAGAAGTAACGGGGTGGACACGGAAGAGCTTAGCTAGAATCATAACGCACGCTTATATGCTATTAACT TACCCAGGAATAGTTCTAATTAAATATCAATATCACACTAAAGACCCCATAATTGAGACTCATAAGTGTTACTTAAGAAT TCAAATGACAACCACAAGGAACTTTTAAGAGGGAGTTTACCTCATTTGGAAGAGGCATCTTCACTTGCATACGAATTTTG GGACCTAGGCCTCATTCCTAATGTTTGGTCTAATTCCCCAAGTTTTGTAAATGTTGCCTTTGGGATATTCACTCAGTCAC AGTTGGTTTTGCTTCCTTTTGACACTAATATGAGATTTTCTCTCTTTTTTTCATATAATTTAGTCATGCATAAATTCACA CTAACAAAACCAGTTCCTTTACGTAATGCAACTATATATATGAGAAATTGTTCCTTTGAAATAATGCAGGAGTTAGCAAA GATGGGCAGGTCCGCCACTTCTTTCACAGGCCTTCTAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACAC TGATGATGAAGGAAGCGAAACTAGATGGCACAAAACAGGGAAAACTAGAGCTGTTTTTGCTGGTGGTGGTGCAGTGAAGG GTTTTAAAAAGATTATGGTACTCTACACCAACTTTGGCAGGCAAAGGAAGCCTGAGAAGACCAATTGGGTGATGCATCAA TACCATCTTGGCAGTAATGAAGAAGAGCAAGATGGAGAATTAGTTGTTTCAAAGGTCTTCTACCAGACACAACCTAGACA ATGTGGTACTTCCATTATAAGAGATCCTCCATAGTGAAAGCTCCCCACAACCTATTCCAGACTTGGGGATGTCCAAGGTG ATGGTTCTTTTTATTGGACTAGCGACGGAAGCAAGCAAAGCAAGAGTGGAGAGAGTAACACTGGAAGAGCTTAACAATGA TATATATAGGCCATGACTTTGTATTTTAGTCTAAACCATTGATGATTAGATCTAACGGTCGTGAGTTATTCTTAGGTTCT CGTACAAAAACATCATTCTTATAAGATAAATCCTCTCTCTCTCTATATATATATATATAATATATAATATGTTGATTTTA CTTTATGGCTAATTGACAGTATTTATTCATGGGACCATAATGAATGAAATTCAAGGTTGAAGATCAGGGGAGATACATAT GGTGGACATGTTCAAATATATAATATAATTGACCCTGACTATACCTTGTTAAATTTCTAAGCAAAAGTGGGTAGTGGTGT CAAAATGGGCTTGGTCTTTGGCCAGCCCATTTAACTTACACTCTTTCTTATTGGAGTTACATTGAAAATTCTAGTATATA TTATCACAATATACCAGAACAAATCACAGCACATATACCATGACATATATCAAAACTACCATATTTCCCTCCCAACTTCC TATTTGATAAATCGAGAACTGTAGTAATAATCCGCTTTAATCATCAAGGACCTAATCACACAAACATTAAATTAAATCAT GAACAAATTCAATTAATCGCATTACCTTATATTCAGTGGCAGTTAACTTTGATTCTTGGCACTGTTTCGTCTGCGAAAGT AAATGAAATCGAAATCAGAGGGAACAGCAGCAATGCAGGACAACCAATACACGTCATGTATAACAGTGTGAAGGAAATTC AGTCTCCTGGAGAAAGTTATTGTTGTAACCAAAGCTAACAGAGAATCTTTGGACATAATCTGATGAGGGAGTCTGAAATG AGTCCATACTGATGTTCCACCCGAATACATACCTAGCTTTTCAGATGAATCTTTGGAGTTATTGTAGGACTGTATTGCAG CTGTCCAACGATCATTAAGAAGCTGAGAAGCTGCACTGCAACTGCAACTGCAACTGCAACTACATCCATCTAAAGCTACG AATCTTGAATAATGATTCTCATTAACAAGAATACTGCTCACAGCATCTATGTGATCTTGAACTTGAACATTTCTTGAAGA AGCAACTTGGTTCTTTTCTAAATCATTCCCAATACTATTTGTTCGGTTGAGACGATCAGATCTGAACAATTATTAACATG GATCTGCAATGAACAAAGTAAAAATGGAAACATGTAAGCATTAAATTAAAATAAAAGAACTGATTAGGGTACAAATACTA TCCAAGCAGACACCACAAATTAAACTGATCAAGTCAGGACAATCTTAATCCACCAGTTACACCCAAAGAATCCCTAATTT TTTCATGTTTGAAGCACAACCCCTCTACAAAAAAATCCGAGCTTTTTCACACATTCTAAAGCCCAAAACCTGAATCTAAC TGCAAAAGTGAAACAGCAAGCAAACGAACTCACAGACAGAAAAAGCCCCAATATTCAGCACACAAATTCAGAAGCAACAA AGAAAGCTCTAACCAAAACACCCGCTAAACTCCAATTTTCAGTTCAAATCAAATAACGAAAATGAAGACAAAGACAAATT CAACTAAAACAAGAAGATCAGTAGCAACAAGCATTAAAAAAATCCCAAAAAAATTGAAAAACTTGAAAACATCATAGTTT CAGAGATCGATGACTAGCAATCAAAATTGAAAGGCAAAGAATGAGGATAAGCAACAGAGGGAGATCAAGATCGACAAAGG CGTGTTGTCGTAGGTGGGAAGGGAGAAGATCCGGTGGCGGCGGTGGTTGTGACGCCGTGGGTCAAAACGGCGGTGTGGAG GTAGGACGGCGGTGGTGGTTCGGTGTATTTTGAGAAAGAGAGAAATTGGTCATGGTGGTATTACAATCATACCCTTCTAA CTCTAAT
CDS sequence (LotjaGi6g1v0332600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATGGTGCAATGACTCTGATAAGGAGAAGGGCAATAAATATTTAATCACGCCCACGAATACTCCTAAAGCTATCAT CAATCTCACAGAAGGAATTCATACAATAAAATGCCCCTCATGTAGCCATAACACGGATGTCAGAGATCAGGGTGGAATTC ATGGATTGCCGGCTGGAGTGAAGTTTGATCCAAATGACCAAGAAATACTGGAGCATTTGGAGGCCAAGGTAGTGTCTGAT GTGTGCAAGCTTCATCCCCTTATTGATCAGTTCATACCAACGCTTCAAGGCGATAATGGAATCTGCTATACACACCCAGA AAAGCTACCAGGAGTTAGCAAAGATGGGCAGGTCCGCCACTTCTTTCACAGGCCTTCTAAAGCATACACAACAGGAACAA GGAAAAGAAGAAAGGTTCACACTGATGATGAAGGAAGCGAAACTAGATGGCACAAAACAGGGAAAACTAGAGCTGTTTTT GCTGGTGGTGGTGCAGTGAAGGGTTTTAAAAAGATTATGGTACTCTACACCAACTTTGGCAGGCAAAGGAAGCCTGAGAA GACCAATTGGGTGATGCATCAATACCATCTTGGCAGTAATGAAGAAGAGCAAGATGGAGAATTAGTTGTTTCAAAGGTCT TCTACCAGACACAACCTAGACAATGTGGTACTTCCATTATAAGAGATCCTCCATAG
Protein sequence (LotjaGi6g1v0332600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKWCNDSDKEKGNKYLITPTNTPKAIINLTEGIHTIKCPSCSHNTDVRDQGGIHGLPAGVKFDPNDQEILEHLEAKVVSD VCKLHPLIDQFIPTLQGDNGICYTHPEKLPGVSKDGQVRHFFHRPSKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVF AGGGAVKGFKKIMVLYTNFGRQRKPEKTNWVMHQYHLGSNEEEQDGELVVSKVFYQTQPRQCGTSIIRDPP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 227 | 227 | 4.1E-131 | – | |
| PANTHER | 1 | 227 | 227 | 4.1E-131 | – | |
| SUPERFAMILY | 52 | 216 | 165 | 1.83E-37 | ||
| ProSiteProfiles | 56 | 216 | 161 | 33.478 | ||
| Pfam | 57 | 197 | 141 | 1.9E-22 | ||
| Gene3D | 65 | 221 | 157 | 7.4E-24 | ||
| MobiDBLite | 129 | 148 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0332600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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