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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0332600 |
Transcript ID | LotjaGi6g1v0332600.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | NAC domain-containing protein; TAIR: AT4G28500.1 NAC domain containing protein 73; Swiss-Prot: sp|O49459|NAC73_ARATH NAC domain-containing protein 73; TrEMBL-Plants: tr|A0A151SAN6|A0A151SAN6_CAJCA NAC domain-containing protein 8; Found in the gene: LotjaGi6g1v0332600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64752007..64754746) extracted from Lotus japonicus Gifu genome v1.2.
CTAGCTAGGCCACATTTATTCCTTGTTTACAAGCGTATATAGACGAGCATAGCCAAACGTGCCCTGCAAGTAACCTTTTC CTATATGTTGAGTTGAGCCTTTCATATGTTTCTTTTATCGGCTATAATAACCCTTAATTGGTCCTCTATCGATCTCTTCT TTTCTTCGTGAGCAAGAACCAGCAGTTTGGGATATCAGGAACTATTCAATCATTGAATCAGAAGAAGGAAAAGTAAGAAA TTGCTATGGTAGAATATGAAATTCTCTCCCTTTCAGCACAACAAGTATAACTAAAATGATCCAGGATATAAAAGTGTCCC AAAAAGGCACTAGCTTTACCTTTCTTCACCCTTTCTCATCTCTATTTTGCTGATTACTATTTGTTTTTATTACTAGAAAG CTGATATTGTAGGAGGAAGTAGAAGCGAAAAGGGTTCTGAAAATTTGTGGTATATATCATTAGAAGTTAACAAAGAAAGA TGAAATGGTGCAATGACTCTGATAAGGAGAAGGGCAATAAATATTTAATCACGCCCACGAATACTCCTAAAGCTATCATC AATCTCACAGAAGGAATTCATACAATAAAATGCCCCTCATGTAGCCATAACACGGATGTCAGAGATCAGGTACTAATTAA TTTAAGGTTTTTTGATTCTCACATAACATATAGTAATTCCTTCTCTTGTGTTTATGCTTAATTTTAGTTCATAACAAGTT GATTTTGTTCATGCACCAATTTGATAGGGTGGAATTCATGGATTGCCGGCTGGAGTGAAGTTTGATCCAAATGACCAAGA AATACTGGAGCATTTGGAGGCCAAGGTAGTGTCTGATGTGTGCAAGCTTCATCCCCTTATTGATCAGTTCATACCAACGC TTCAAGGCGATAATGGAATCTGCTATACACACCCAGAAAAGCTACCAGGTGTTGATTTTTTTTTTCCCTTACTTAAAATA GTTTAGTTGAGACATTGCATATGCATGTTCTAGCCATCGTTGAAATTATCATTTAATGGGAGGCACATCTTGATATATAT GCGTGCGGCACCACATGTGTGAAATTAATTGTTTTAGAAATGAAAATGTTTTTTTTCTTTCAAAAGGTTCAAAGTATAAG GCGGTTTAGAATCACATCAGAACATTTATGCTCTCTAAGTGGGTTGGCAATGACTGCCAAACTCAATTGTGGCGTCATAG CTTACTTAGCTTACTTTAGGCATGCTCAAGTGAATTGTAAATGTTAGTTCTTAATTATTTTCCACCAATATTCGTCAAAT TTCAAACATGACACCAAATAGAAGGTTTTTGTCGGCTAATTCTATCAGCTCAAAAAAGAAGGTTGCTACCTTGTCATTCT TTTGATGGGGGCTTTCTCAACCTCTTACCGGATATAAAGATACAAATAAGAGTTCCTAATTCATAGTTAAGAATTCCTGA TTCATAGTTATTATAACTATACCTACTCAAGTCCACTAAGCTAAATGCTTAGAACTTGAAGAGTTGTGAACCTCTCGGGT CCCAAATACCTAAATCCGGCCATAGGTAGCACGACAAAAAGGACAGCTTAGAGAAGTAACGGGGTGGACACGGAAGAGCT TAGCTAGAATCATAACGCACGCTTATATGCTATTAACTTACCCAGGAATAGTTCTAATTAAATATCAATATCACACTAAA GACCCCATAATTGAGACTCATAAGTGTTACTTAAGAATTCAAATGACAACCACAAGGAACTTTTAAGAGGGAGTTTACCT CATTTGGAAGAGGCATCTTCACTTGCATACGAATTTTGGGACCTAGGCCTCATTCCTAATGTTTGGTCTAATTCCCCAAG TTTTGTAAATGTTGCCTTTGGGATATTCACTCAGTCACAGTTGGTTTTGCTTCCTTTTGACACTAATATGAGATTTTCTC TCTTTTTTTCATATAATTTAGTCATGCATAAATTCACACTAACAAAACCAGTTCCTTTACGTAATGCAACTATATATATG AGAAATTGTTCCTTTGAAATAATGCAGGAGTTAGCAAAGATGGGCAGGTCCGCCACTTCTTTCACAGGCCTTCTAAAGCA TACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACACTGATGATGAAGGAAGCGAAACTAGATGGCACAAAACAGGGAA AACTAGAGCTGTTTTTGCTGGTGGTGGTGCAGTGAAGGGTTTTAAAAAGATTATGGTACTCTACACCAACTTTGGCAGGC AAAGGAAGCCTGAGAAGACCAATTGGGTGATGCATCAATACCATCTTGGCAGTAATGAAGAAGAGCAAGATGGAGAATTA GTTGTTTCAAAGGTCTTCTACCAGACACAACCTAGACAATGTGGTACTTCCATTATAAGAGATCCTCCATAGTGAAAGCT CCCCACAACCTATTCCAGACTTGGGGATGTCCAAGGTGATGGTTCTTTTTATTGGACTAGCGACGGAAGCAAGCAAAGCA AGAGTGGAGAGAGTAACACTGGAAGAGCTTAACAATGATATATATAGGCCATGACTTTGTATTTTAGTCTAAACCATTGA TGATTAGATCTAACGGTCGTGAGTTATTCTTAGGTTCTCGTACAAAAACATCATTCTTATAAGATAAATCCTCTCTCTCT CTATATATATATATATAATATATAATATGTTGATTTTACTTTATGGCTAATTGACAGTATTTATTCATGGGACCATAATG AATGAAATTCAAGGTTGAAG
CDS sequence (LotjaGi6g1v0332600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATGGTGCAATGACTCTGATAAGGAGAAGGGCAATAAATATTTAATCACGCCCACGAATACTCCTAAAGCTATCAT CAATCTCACAGAAGGAATTCATACAATAAAATGCCCCTCATGTAGCCATAACACGGATGTCAGAGATCAGGGTGGAATTC ATGGATTGCCGGCTGGAGTGAAGTTTGATCCAAATGACCAAGAAATACTGGAGCATTTGGAGGCCAAGGTAGTGTCTGAT GTGTGCAAGCTTCATCCCCTTATTGATCAGTTCATACCAACGCTTCAAGGCGATAATGGAATCTGCTATACACACCCAGA AAAGCTACCAGGAGTTAGCAAAGATGGGCAGGTCCGCCACTTCTTTCACAGGCCTTCTAAAGCATACACAACAGGAACAA GGAAAAGAAGAAAGGTTCACACTGATGATGAAGGAAGCGAAACTAGATGGCACAAAACAGGGAAAACTAGAGCTGTTTTT GCTGGTGGTGGTGCAGTGAAGGGTTTTAAAAAGATTATGGTACTCTACACCAACTTTGGCAGGCAAAGGAAGCCTGAGAA GACCAATTGGGTGATGCATCAATACCATCTTGGCAGTAATGAAGAAGAGCAAGATGGAGAATTAGTTGTTTCAAAGGTCT TCTACCAGACACAACCTAGACAATGTGGTACTTCCATTATAAGAGATCCTCCATAG
Protein sequence (LotjaGi6g1v0332600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKWCNDSDKEKGNKYLITPTNTPKAIINLTEGIHTIKCPSCSHNTDVRDQGGIHGLPAGVKFDPNDQEILEHLEAKVVSD VCKLHPLIDQFIPTLQGDNGICYTHPEKLPGVSKDGQVRHFFHRPSKAYTTGTRKRRKVHTDDEGSETRWHKTGKTRAVF AGGGAVKGFKKIMVLYTNFGRQRKPEKTNWVMHQYHLGSNEEEQDGELVVSKVFYQTQPRQCGTSIIRDPP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 227 | 227 | 4.1E-131 | – | |
PANTHER | 1 | 227 | 227 | 4.1E-131 | – | |
SUPERFAMILY | 52 | 216 | 165 | 1.83E-37 | ||
ProSiteProfiles | 56 | 216 | 161 | 33.478 | ||
Pfam | 57 | 197 | 141 | 1.9E-22 | ||
Gene3D | 65 | 221 | 157 | 7.4E-24 | ||
MobiDBLite | 129 | 148 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0332600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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