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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0335500 |
| Transcript ID | LotjaGi6g1v0335500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | hydroxyproline-rich glycoprotein family protein; TAIR: AT1G11070.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q1PEB4|Y4498_ARATH Uncharacterized protein At4g04980; TrEMBL-Plants: tr|A0A1J7HLC9|A0A1J7HLC9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0335500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64985955..64990369) extracted from Lotus japonicus Gifu genome v1.2.
ACTCAAGCCATACCTCTTACTTGCATGCATGTCTCTTATGTTTTATTGTCAACCCAATTTGAATATTCATTCTCAACCTT GTTTTTAATTTTTTTTGTTTCTTGACAAGGATTGACTAATTCTCTTGTAAATTATTCCATAGTTTTCAGTATAAGCTGAA CATTTCAACATGGCTGTACACGTTTTGTGAAGTTGTGGTTTGCACATCATAATTTATCTTTTATTCCAGAGTTTCCAGAG TTTCCAGTCATTATAAGCAATTAAGACATGTCTACTCTGAAATTTTGCGGTTTCAAGCCAATGATCTTTAGGAGGAAGTC GTATACTTGTGAGGTAAGTAATCTTCTGAAAATTCCTGTTTCTCTGACCTTTTCTTTGCATTTCAACATCTCTTATGGAC CTGAGATTGCAAAATGAACAAATAAAGACAGTCTGAATCCTTTAAAAACAAATTGAAAATCTTGATATTCAGTTTTTGAT ACTTTTAACATAGCAATTCCCATGTGTTTTGTCATTGTTATTTTTCATGAAATGGTATGTTCCATGCTTCAATGTCATTA TACCTTTTCAATTCCATTTACCAATTTTTTTCTTTGAAGCATTTAATTCAGAACCTTCATGAGATGAAATTGCTGAAAAT TTTATTTACATGTGTAACCATTAGAAGAGGTATCTAGTATACAAGCTTTAGTGGTTTTGGTTTTTGCTGTCTGAAATATT ATTCAGATTTTATACGTTGGAAAGCTTCTCAATGTTTAATCACATGTTTTGCAGTCAATAAGAAGCTCTTCCACTCCCAA AAAGGCTTCAAAGGCTCATCATGATGATTGGAAGGGAGGAGAATCAATGGAGTGGTCATTTGTTGGTGGAGATCAATTGA TTTTAATGATGGAGGTCCATAAGAAGATCTTTGTCTTCAGGGACATCATGGACCTTTCTCCTTTGCACACTTCTGCTTCC TTAAGTCAGGTTATTTATTCCTATTTTCTGTTTGAAAAAATGATTGTCTCCCTTACTTAAAAGTTGTTACAAAAAGATGT TCTTATGTGATGTTCTTTTTGGCTCCTTTGCACAGATGGTTATTACAACTGTGGAAGATCTGCAAAGGCTTTACCCTGGG ATCATACCAAGCAAAAGAGTGTCAAATATTGACAACTCAATAGATCAGGTTTCAACAATTTGTTGCATCTAAAACTATGC TAATTTCTAATTATGATTACCATTGAAATCTTGGTCTCCCAAAGTACTAAATGTAGAAAATTTTCCACTAGGATCTGGCC TACTTCTGTGAGGCTTTGAAGTCTCTTGGAGAGTCATGGATAATGAACAATGATAGTCTGGACAGAAGCAATTACAACTT ACCATCATGCAAGGATAATACCAATATGCAACAACTCGGTATGTTATCAATGATCTTATTCTCCCTGTCAAAATAATCAG AATTTAGAAATTATTTCCATTTTCAACACTTGACTTTGTTTTGCAGGTGAAACTATGTTGGCTACACTTGATTGTTTGAT TAAGATTGCAAATGATAAGTTTGATATCATGGAAGAGGATAGTCCAAAGAAAGGATTCAGCTCATTTGCAAAATCCTCCT TTACAGATAGCAGCTTCCTTTGCCCCTCTTCTCCAATCACACCAAAATCTGTCCTTCCAGAAACAATGAAACACAGTCCA AGATCTTCTTGCACCCCAACACTCAGGTCTCTCAGAGTTCAAGCTGTGGGAAAGCTCAACCCAATTGATTTAAAGCGCTT AGCTTTCCACATGTCACCGCCACGCATGGAAACTCATGATCATAAAATAGAGAAGGAACCAGCCATAGACAATGAAATGG ATCTCAATGCTAGAAATTCTGGAAAGGATACATCAGAGGATCTAGTTTTTGACTTGGACACAAAAGAGGAATCAAAGAAA ACAACTAGTCATCATTTAGAAACATATAAACCATTGCAAACACCTACACAATCATCTCCACCTCCTCAATTAACACCAAT GCCACCACCTCCACCCCCACCCCTTTCCACACCATACATGATACTTCCAAATGTGACAATGCCAGCACCACCACCACCAC CACCTCCACCGCCAACACTGTCTCCAAGCTCAAGCAGTACTGCAGTACCACCTCCACCTCCACCATTCATTCCTCTGAAA GCTGGATCACCACCACCACCTCCACCACCCATGTCCTTGAAACCCGGATCAGCTCCAGCACCACCACCACCGATGCTATG TGGAAATGGAGCTGCTGCCCCACCACCACCTCCACTTGGAGCAGGGAGAGCCTTGCGGCCCAAAGCAACTACTAAACTGA AAAGGTCAACACAATTAGGCAACCTGTACCGAACTCTCAAGGTGAAAGTAGAAGGATCTAGCCTCAGAGGCAAATCATCC AATGGGAGAACAAGTGCAATTGGTGCAGGAAAAACTGGAGGAAAACAAGGAATGGCTGATGCTCTAGCAGAGATGACAAA AAGGTATGCTTCTTAACATTTTATTAGTCTTCGTCTAACAGCATATTTGGAACAGCTTCGTTTCATCATAACCAATTCCG AAACCGAGAAGATACTCATGAAAACTTCTTCTCAAAATTGATCCTGACTTTAGAATCAATCGTAGAAGAGCTTTCAAACA TGCACTAAAACTGTTAAGTTGAACCTAATGTCTTTTGTTTTTGTTTCCCCAAATTTTTACTAGATCATCATACTTTCAAC AAATAGAAGCAGATGTTCAAAAGTACACAAAACAGATCATAGAACTGAGATCTTCTATTACCAATTTTAAGACAAAGGAC ATGACAGAGTTGATCAAGTTCCACAAAGATGCTGAGTCCGTTCTTGAGAATTTAACAGATGAATCACAAGTGAGTTTAGA AACTTCATTTCCATTGGAATTGCACCTAATGCATCTATTAAATTGTCATGTACAATTCTAATATTGCTATGCAGGTCCTA TCACGGTTTGAAGGTTTCCCCTCAAAGAAGCTAGAAGCTATAAGAATGGCAGCATCACTATACCATAAATTGGATTCAAT ACATATTGAGCTTCAAAATTGGAACATAGTGGCTCCCGTGGGTCAGCTCCTTGACAAGATTGAACGCTATTTCAACAAGG TATTCCACAGTCTCTTATAACATGTTTGGATCGGCTTCTCATTTTCTATAATCAATTTTGGCATCCAGAAGTGAGCTACT CACAGAAGTTTTTAGAATTGATTTTGACTTTAGAATCAAGCAGAAATATTTCCAGACATGCACTAGTTCCTTTATATATG TACAATCATTTCTAACCAACAAGAGCAATTAACATGCAGATCAAAACAGAATTAGATACTTTGGAGCGAACAAAAGATGA AGAGTCCAAGAAATTCAAGGGCCACAACATCGAATTTGACTTCTACATTCTTGTTAAAATTAAAGAAGCAATGGTGGATG TTTCTTCCAATTGCATGGAGTTAGCACTAAAGGTTTCAAGGTCAAACAGTGCTAGTGATGGGAAAAGAAAAGGATGTGAT GGCAAGTTGCTTTGGAGGGCTTTCCAATTCGCATTTCGGGTGTATACATTTGCTGGTGGACATGATGATCGTGCTGACAA GTTGACAAGAGAACTGGCTAAGGAAATTGAGAGTGACCCCAATCACCCATGAATATGATCTTGCACAAGCTTTCTTGCGA GTAAAGATATAAGCTTGTGAGCTGATGACATGCTTGATCTATAATATATTTAAGAAGTGAAAATTTGACATGGTGACCCC AATCACCCATGAATATATTAGTCTTTTGATGAAAAATGATGTTTAGTATGAGAGGAGTGTTCTCTCTCTAAATATACCAC TTGACATGAATTTTTGTTTAAGTTTTACATGAAAGATTGCACTTGAGATCACATTTACATGCAAGATTGTGCCAAATAAC ACACAGTGTGAAGCACAGTTGATCTTCGCACAGTTGATCTTAGAAAACTATCCAATTAATCTCCACACTGAAAATGATAT GTAAAAACATTAATAGAAAATAATTACAATCAGTAAATACGTCATTGTAGTATTCCATATATATCAATACAGATCTATAT TCTATCAAAATAATTAGTATGTTATTCGAATTAAAATCCACCGTGCATAGCACGGGTAATCGGGCTAAATACTAGTATTT AAGAAGTGAAAATTTGACATGGTGACCGGTGAGGTTCTTTCTGAACACCAATTATAAGTCTGTTTTTTTTTTTCCTTTTT AAAGTTAATGTCCGTTTTTGTAGTAAGTGGGTGTTTGGTTCCCATTACATAATAATCCCAATGTCAAAAGTGCAAGTCAA GAAAAACTTGAGATGTTTGGTTGTGTTATTCACATAAGATTTTTAGTTTAGAATCAATTTTGAATTGAAGCCGAAAATCC TAGCTTACTTCGTGG
CDS sequence (LotjaGi6g1v0335500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTACTCTGAAATTTTGCGGTTTCAAGCCAATGATCTTTAGGAGGAAGTCGTATACTTGTGAGTCAATAAGAAGCTC TTCCACTCCCAAAAAGGCTTCAAAGGCTCATCATGATGATTGGAAGGGAGGAGAATCAATGGAGTGGTCATTTGTTGGTG GAGATCAATTGATTTTAATGATGGAGGTCCATAAGAAGATCTTTGTCTTCAGGGACATCATGGACCTTTCTCCTTTGCAC ACTTCTGCTTCCTTAAGTCAGATGGTTATTACAACTGTGGAAGATCTGCAAAGGCTTTACCCTGGGATCATACCAAGCAA AAGAGTGTCAAATATTGACAACTCAATAGATCAGGATCTGGCCTACTTCTGTGAGGCTTTGAAGTCTCTTGGAGAGTCAT GGATAATGAACAATGATAGTCTGGACAGAAGCAATTACAACTTACCATCATGCAAGGATAATACCAATATGCAACAACTC GGTGAAACTATGTTGGCTACACTTGATTGTTTGATTAAGATTGCAAATGATAAGTTTGATATCATGGAAGAGGATAGTCC AAAGAAAGGATTCAGCTCATTTGCAAAATCCTCCTTTACAGATAGCAGCTTCCTTTGCCCCTCTTCTCCAATCACACCAA AATCTGTCCTTCCAGAAACAATGAAACACAGTCCAAGATCTTCTTGCACCCCAACACTCAGGTCTCTCAGAGTTCAAGCT GTGGGAAAGCTCAACCCAATTGATTTAAAGCGCTTAGCTTTCCACATGTCACCGCCACGCATGGAAACTCATGATCATAA AATAGAGAAGGAACCAGCCATAGACAATGAAATGGATCTCAATGCTAGAAATTCTGGAAAGGATACATCAGAGGATCTAG TTTTTGACTTGGACACAAAAGAGGAATCAAAGAAAACAACTAGTCATCATTTAGAAACATATAAACCATTGCAAACACCT ACACAATCATCTCCACCTCCTCAATTAACACCAATGCCACCACCTCCACCCCCACCCCTTTCCACACCATACATGATACT TCCAAATGTGACAATGCCAGCACCACCACCACCACCACCTCCACCGCCAACACTGTCTCCAAGCTCAAGCAGTACTGCAG TACCACCTCCACCTCCACCATTCATTCCTCTGAAAGCTGGATCACCACCACCACCTCCACCACCCATGTCCTTGAAACCC GGATCAGCTCCAGCACCACCACCACCGATGCTATGTGGAAATGGAGCTGCTGCCCCACCACCACCTCCACTTGGAGCAGG GAGAGCCTTGCGGCCCAAAGCAACTACTAAACTGAAAAGGTCAACACAATTAGGCAACCTGTACCGAACTCTCAAGGTGA AAGTAGAAGGATCTAGCCTCAGAGGCAAATCATCCAATGGGAGAACAAGTGCAATTGGTGCAGGAAAAACTGGAGGAAAA CAAGGAATGGCTGATGCTCTAGCAGAGATGACAAAAAGATCATCATACTTTCAACAAATAGAAGCAGATGTTCAAAAGTA CACAAAACAGATCATAGAACTGAGATCTTCTATTACCAATTTTAAGACAAAGGACATGACAGAGTTGATCAAGTTCCACA AAGATGCTGAGTCCGTTCTTGAGAATTTAACAGATGAATCACAAGTCCTATCACGGTTTGAAGGTTTCCCCTCAAAGAAG CTAGAAGCTATAAGAATGGCAGCATCACTATACCATAAATTGGATTCAATACATATTGAGCTTCAAAATTGGAACATAGT GGCTCCCGTGGGTCAGCTCCTTGACAAGATTGAACGCTATTTCAACAAGATCAAAACAGAATTAGATACTTTGGAGCGAA CAAAAGATGAAGAGTCCAAGAAATTCAAGGGCCACAACATCGAATTTGACTTCTACATTCTTGTTAAAATTAAAGAAGCA ATGGTGGATGTTTCTTCCAATTGCATGGAGTTAGCACTAAAGGTTTCAAGGTCAAACAGTGCTAGTGATGGGAAAAGAAA AGGATGTGATGGCAAGTTGCTTTGGAGGGCTTTCCAATTCGCATTTCGGGTGTATACATTTGCTGGTGGACATGATGATC GTGCTGACAAGTTGACAAGAGAACTGGCTAAGGAAATTGAGAGTGACCCCAATCACCCATGA
Protein sequence (LotjaGi6g1v0335500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTLKFCGFKPMIFRRKSYTCESIRSSSTPKKASKAHHDDWKGGESMEWSFVGGDQLILMMEVHKKIFVFRDIMDLSPLH TSASLSQMVITTVEDLQRLYPGIIPSKRVSNIDNSIDQDLAYFCEALKSLGESWIMNNDSLDRSNYNLPSCKDNTNMQQL GETMLATLDCLIKIANDKFDIMEEDSPKKGFSSFAKSSFTDSSFLCPSSPITPKSVLPETMKHSPRSSCTPTLRSLRVQA VGKLNPIDLKRLAFHMSPPRMETHDHKIEKEPAIDNEMDLNARNSGKDTSEDLVFDLDTKEESKKTTSHHLETYKPLQTP TQSSPPPQLTPMPPPPPPPLSTPYMILPNVTMPAPPPPPPPPPTLSPSSSSTAVPPPPPPFIPLKAGSPPPPPPPMSLKP GSAPAPPPPMLCGNGAAAPPPPPLGAGRALRPKATTKLKRSTQLGNLYRTLKVKVEGSSLRGKSSNGRTSAIGAGKTGGK QGMADALAEMTKRSSYFQQIEADVQKYTKQIIELRSSITNFKTKDMTELIKFHKDAESVLENLTDESQVLSRFEGFPSKK LEAIRMAASLYHKLDSIHIELQNWNIVAPVGQLLDKIERYFNKIKTELDTLERTKDEESKKFKGHNIEFDFYILVKIKEA MVDVSSNCMELALKVSRSNSASDGKRKGCDGKLLWRAFQFAFRVYTFAGGHDDRADKLTRELAKEIESDPNHP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 711 | 705 | 6.4E-275 | – | |
| PANTHER | 7 | 711 | 705 | 6.4E-275 | ||
| MobiDBLite | 258 | 311 | 54 | - | – | |
| MobiDBLite | 258 | 429 | 172 | - | – | |
| MobiDBLite | 320 | 427 | 108 | - | – | |
| MobiDBLite | 459 | 480 | 22 | - | – | |
| Coils | 497 | 517 | 21 | - | – | |
| Coils | 594 | 621 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0335500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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