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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0335900 |
| Transcript ID | LotjaGi6g1v0335900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein,; TAIR: AT1G61110.1 NAC domain containing protein 25; Swiss-Prot: sp|Q8GY42|NAC25_ARATH NAC transcription factor 25; TrEMBL-Plants: tr|V7BQG4|V7BQG4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0335900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65037040..65038704) extracted from Lotus japonicus Gifu genome v1.2.
CATCATTTCATACTCACTCTTACTCTTTTCAACGTTTGTTCTCCAAATAAAAAAACAGAGAACAGATAATCTCAAAAAAA TTGAATTATGTGCATGTGATCAAGGAGTGAACTGAATTGTGATATACCATCATGATGTATAGCATGGATTCATCTTCTTC TCAGCATCCAAACCTCCCTCCAGGTTTTCGCTTCCACCCTACAGATGAAGAACTAGTTGTTCACTACCTTAAAAGAAAAG CAGATTCTGCTCCTCTTCCTGTTGCCATAATTGCTGATGTTGATCTCTATAAGATCGATCCATGGGAGCTCCCAAGTACG CAAATTTCATCACACCCCACTTTTTCTTTCTGCCACACGACATAAAGTTTCTGGATCTGTTACTGATGAATGCATAACTG TTGATGATTGCATAGTTATTATAGAAACTTTAATGTTTATGGTACTTTTTGTCTGTTTTGCTGCAGGTAAAGCAGCGTTT GGTGAGCGAGAGTGGTACTTTTTCAGTCCAAGGGATAGGAAATATCCAAACGGGGCAAGGCCTAATAGGGCTGCTACTTC AGGGTATTGGAAAGCTACAGGAACTGACAAGCCTATCATAGCTTCTGATGGGAACCACAAAGTTGGAGTTAAGAAAGCTC TTCTTTTCTATGGTGGGAAGCCTCCAAAAGGGGTTAAAACTAATTGGATTATGCATGAGTACAGGCTCCCCGAAAATTCA TTGAATTCATCATCTCTGGCTGCTGCTCCTGCACATGGTAGAAAGAAGAATTCCTTGAGGGTATGCATGCCATGTGTTTT AATTCATATTCTCTATGAGTTTCTAATCTTTTTTGCTGGAATTTTCTTGTCGAATAATTTTTTTTTCTTGTTTTGAATTT GTGTTTGGCAGCTTGATGATTGGGTTTTGTGCCGAATTTACATAAAAAACAACAGTACAAGCTTCCCAAGGCTACCATTG ATGGAGCAGGACAAGGAGGTTTCTGATTCTATGCTACCAACGATGTCAATGGCTAAAGATGAGAATTGTAAACCAACATC TTCTTCAAAAAGTGCAAGTTATGGACCTATGGGACTGGAAAACGATCATGACAACTTTTTCCTTGGAATATTAGCAGCTG AACAGAGCATGCAAAATGGTTCAAACTCAGACTCACATCAAGTTATCTCTTCAGACACAAAGGGGAATAACTTCCCCGTG AAACGAGCACTGCCGTCACAATTTTGGAATGAAACGGTGTCTTCTTCTCCAGGGAGGCGATTCCATTGTGATCTTAATAA CACTGGAAGCAGCTGCACTGCTGATGAGGAAAACAATTCCTTTGCTTCTCTGTTTAGCCAGTTTCCACAGAGCTCAGCGT TTCTTGGCCCTGTTGGTGATGGTGGGTTTAGGCAACAGTTTCAACTTCCAAACATCAATTGGAACGTTTAATTAGGCTAG ATAGATACTGGTTGTGATATATTGATAATGTATGTAGCTAGCTGCAATTGTAGGTAGGTCCTGTTAAGTTTTAATCTGGG TTATATTATTTTGCTCCTTACTGTAATCATAACATATTACATATACAGGAGGTTTCATGACTATATATATGTGTATGCCT GTATCATATATACTAATGCTTTGAAGGCTTGAAGCTTAGACCAAAATCACTTTTATATAATCCTG
CDS sequence (LotjaGi6g1v0335900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTATAGCATGGATTCATCTTCTTCTCAGCATCCAAACCTCCCTCCAGGTTTTCGCTTCCACCCTACAGATGAAGA ACTAGTTGTTCACTACCTTAAAAGAAAAGCAGATTCTGCTCCTCTTCCTGTTGCCATAATTGCTGATGTTGATCTCTATA AGATCGATCCATGGGAGCTCCCAAGTAAAGCAGCGTTTGGTGAGCGAGAGTGGTACTTTTTCAGTCCAAGGGATAGGAAA TATCCAAACGGGGCAAGGCCTAATAGGGCTGCTACTTCAGGGTATTGGAAAGCTACAGGAACTGACAAGCCTATCATAGC TTCTGATGGGAACCACAAAGTTGGAGTTAAGAAAGCTCTTCTTTTCTATGGTGGGAAGCCTCCAAAAGGGGTTAAAACTA ATTGGATTATGCATGAGTACAGGCTCCCCGAAAATTCATTGAATTCATCATCTCTGGCTGCTGCTCCTGCACATGGTAGA AAGAAGAATTCCTTGAGGCTTGATGATTGGGTTTTGTGCCGAATTTACATAAAAAACAACAGTACAAGCTTCCCAAGGCT ACCATTGATGGAGCAGGACAAGGAGGTTTCTGATTCTATGCTACCAACGATGTCAATGGCTAAAGATGAGAATTGTAAAC CAACATCTTCTTCAAAAAGTGCAAGTTATGGACCTATGGGACTGGAAAACGATCATGACAACTTTTTCCTTGGAATATTA GCAGCTGAACAGAGCATGCAAAATGGTTCAAACTCAGACTCACATCAAGTTATCTCTTCAGACACAAAGGGGAATAACTT CCCCGTGAAACGAGCACTGCCGTCACAATTTTGGAATGAAACGGTGTCTTCTTCTCCAGGGAGGCGATTCCATTGTGATC TTAATAACACTGGAAGCAGCTGCACTGCTGATGAGGAAAACAATTCCTTTGCTTCTCTGTTTAGCCAGTTTCCACAGAGC TCAGCGTTTCTTGGCCCTGTTGGTGATGGTGGGTTTAGGCAACAGTTTCAACTTCCAAACATCAATTGGAACGTTTAA
Protein sequence (LotjaGi6g1v0335900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMYSMDSSSSQHPNLPPGFRFHPTDEELVVHYLKRKADSAPLPVAIIADVDLYKIDPWELPSKAAFGEREWYFFSPRDRK YPNGARPNRAATSGYWKATGTDKPIIASDGNHKVGVKKALLFYGGKPPKGVKTNWIMHEYRLPENSLNSSSLAAAPAHGR KKNSLRLDDWVLCRIYIKNNSTSFPRLPLMEQDKEVSDSMLPTMSMAKDENCKPTSSSKSASYGPMGLENDHDNFFLGIL AAEQSMQNGSNSDSHQVISSDTKGNNFPVKRALPSQFWNETVSSSPGRRFHCDLNNTGSSCTADEENNSFASLFSQFPQS SAFLGPVGDGGFRQQFQLPNINWNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 340 | 338 | 8.9E-134 | – | |
| PANTHER | 3 | 340 | 338 | 8.9E-134 | – | |
| SUPERFAMILY | 4 | 178 | 175 | 1.83E-64 | ||
| ProSiteProfiles | 15 | 178 | 164 | 61.043 | ||
| Pfam | 16 | 142 | 127 | 5.3E-39 | ||
| Gene3D | 24 | 183 | 160 | 7.6E-65 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0335900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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