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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0338500 |
| Transcript ID | LotjaGi6g1v0338500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein jagunal 1; TAIR: AT5G51510.1 jagunal-like protein; Swiss-Prot: sp|Q5XJX0|JGN1A_DANRE Protein jagunal homolog 1-A; TrEMBL-Plants: tr|A0A0S3SA76|A0A0S3SA76_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0338500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65285770..65288529) extracted from Lotus japonicus Gifu genome v1.2.
TACCAAAGAGCCCAAAGTTAAGATGGGCCAATAAAAACAATAAATTCATCTTTCAAAAAATAAAAAGAATAAATTTAGAG GGAGCTTAATTTGGAGGATTGCCATTAACAGTTTAACACCCGCCCCCGATTTTGCGTTTCTCTCTCGAACTTCCGGTGAC CACCGCGGCGCGATTTCCGGTGAGGATCCAAGGCGGTTCCGGCGCTACTCCGTCACAGCACGAAGGTAACAACTCTTCTC TCATTATCTCTCTGCTCCGTTATCAGAGAACATGTTCTCATTTCAACTCTCTTCAAATCTCTGTTCTCCTTTGATTAGGG GGCGAGTCAAATTCAAAGTAGAAGAAGACGATGCAGCACAGAAATTCATCGTTAGGAAGGCCTTCTGGAACCGATGGCTC TGATTACTCCTACCGTATGGTAGTTGATTCAAGTCAGCTCCATTCTTTAACCCTATTCCATTTTTTCTTTCAATTGAATT CTCTAGCTAGAGCTCATTCTTTGTTGCTTTTCTGCTATGTGATTTAGGGTATCAACTGGTTGCAAAGGGGAAGAAACGCC TCTCTCTGCTATTTATCATTGAGGTACAGTACAATGCAATAGAATGATAGATATTGTTTACTTTTTTTTTTTGAATTAGG GTCTTTTATATCAATGTAATATGGATATTCTGTGTTTCTCGGCTGTGTCGCTCGATCGAGGATTTTTCGTTTATCGAATA TTTTGAGCATGTTTTCTTGTAAATGGGTAATGTGGTAGTGCTGTTTTAGTATTAACCTGTCTCAGAAGAGTAAAGTCACA ATTTGGAAACATAATGTATATACATCTTTTTATTTAGTAAGTCTTCGAGATGAAGTTTCTGCGCCGATTAGGTTCTTTCC CTTTGAAGGGAAAACATGTAAAATAGAAAAACAAAATATTAAGTTGGCCATGATTTTATTTGAGGTACAACTCTACAAAT CATTATTTGTTTTCCTGGACTGATCTATATTGACATATTTTGCCAAGATACCATAGAACTCATTGATCAACTTGATGGTT ATATTCAATGAACAATGGTCATTAATTATTTTTAATAGTTCATTCTGGTTAAGCTACTTGGACTGCTCCTCCAGCTACAC TGATAGTGAATTCATGAGTTCTTTTTTTGATGATAAAATTTATGATTAATGAACAATGGCCATCTTTATTTTGTTTGATA TATGATTTGAAATTTTGAATTGTGCCCTGCAGGCTTTGGTTCTATTAATTGGAGTGGTATTTGCATTTTTACCAGGAAGA GAGCAGCATATTCCAAATACCGCAGTCTTTTCTTCTGTTATTGTTAGTGTTGTTTTGGTGATCATTGCTGATATAGGTGC CTAAACCCAAAGTTCTTTACTTTCCTTTATCATTTTATTGAGGTTTTTATCTGAACCTTTTAAATAAGCTATCTCTGCCA ATTTTTGTGAAATAGGTCGAAGACGAAGCCGGTCCGGTTTGTTGAGATTTTATGCCATTGCATCATCTATAGCAACACTT CAATTGATTGTTTCTCTTGCTATGTGGCATTCCCTGCCGAAGGTAAATATGACAATGTTAACTGTAGATTTATAAGAAAA TACTTCATAAACTCTCAAGAGAGAAACATGACAACTAGGATGTAAACATCTGAAACTGATATTAGTCTCTCACCCTATTG AGTGGGAGAATGCCCTGGGTCACCTAAAAAAAGGAAGTAAGCATCTGAAACTAATTTCTAGGGGATTGACTGAGGTCATG AATTAATGTGGGTGCTAGAATTCATATCCTTTTTTAATAGTAGTTATCTTTTCTAATAGTTTTTGTTTTTTTACCATCTA CACAAAGGGATCTTGTGCTTCAGTGTTCAGTTTTGATTGTTTGTAATGTTTATATATTTTTTCTCCCTGTTATGAGTCTG ACTCACTCTGCCTTTTGAGTTTTGACAATCTCCAATCTAAGCCTCTTAGTGTACCAAATTTGAAGCATAAACTTACTATG ATATTTCTCTTTTGAAACGCCCTTATATGATTGCATTGAACTCCTGCAGGCTATCTGGGATTTTGGCTTTTCGGAAACTA GGAGGTTTGATGCCACTGGTTTTACTGGTCTTCAAGCTGGTGAGTCTATTTTCAAATATTTTGTTCATGTTGTGCAAATT GGTCTTGTAATTAGGTCATTTGTAGTAGTAACCGAGCTTTACCTCTTGCAGGTTTGCTGTTATATCTGCTCACTTTTTCC CTGTTCAAGATATGGACCATCAAAGCAGTTCTTTCCCTGATTTTTAACATGTCTCCTCCCAAGAAATCCTCTTAGCTCAT TAATCTATTCACAACAGATTGATCAGTATGACCGTATTTTCTATACAGAAACCCTTTCAAGACTGTATTGTTAGTGATTC GTTTTATTTTTTTATTTTAGTTCCAGTCAAGGGAAGGGAAATTTTGAGTCATGTGAGTATATAATCCTTCCATTAAACAT TGGGAAGCTGATGACTACGATAAAAACATTAACCCAAGGTTCTTCAGCGAACCCATGGCTGTGTAATTTTGAATTGTCAT CCTAATTGTGAGTGAGATTCAGCCCAAGATCACATTTTTAAGCAACACGACTCAAGGTTGTCATTAATAACAAAATGAAA AAGATATAACGTGTCTCAAATTTCAAGTAGACAAGCCTTGAGTTGGAATCTTCAGTCTTCACATAATGACATCCCTATAC AAGTATGTATGTATTGTCATGCTCTGTTACTATCTATAAA
CDS sequence (LotjaGi6g1v0338500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCACAGAAATTCATCGTTAGGAAGGCCTTCTGGAACCGATGGCTCTGATTACTCCTACCGTATGGTAGTTGATTC AAGGTATCAACTGGTTGCAAAGGGGAAGAAACGCCTCTCTCTGCTATTTATCATTGAGGCTTTGGTTCTATTAATTGGAG TGGTATTTGCATTTTTACCAGGAAGAGAGCAGCATATTCCAAATACCGCAGTCTTTTCTTCTGTTATTGTTAGTGTTGTT TTGGTGATCATTGCTGATATAGGTCGAAGACGAAGCCGGTCCGGTTTGTTGAGATTTTATGCCATTGCATCATCTATAGC AACACTTCAATTGATTGTTTCTCTTGCTATGTGGCATTCCCTGCCGAAGGCTATCTGGGATTTTGGCTTTTCGGAAACTA GGAGGTTTGATGCCACTGGTTTTACTGGTCTTCAAGCTGGTTTGCTGTTATATCTGCTCACTTTTTCCCTGTTCAAGATA TGGACCATCAAAGCAGTTCTTTCCCTGATTTTTAACATGTCTCCTCCCAAGAAATCCTCTTAG
Protein sequence (LotjaGi6g1v0338500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQHRNSSLGRPSGTDGSDYSYRMVVDSRYQLVAKGKKRLSLLFIIEALVLLIGVVFAFLPGREQHIPNTAVFSSVIVSVV LVIIADIGRRRSRSGLLRFYAIASSIATLQLIVSLAMWHSLPKAIWDFGFSETRRFDATGFTGLQAGLLLYLLTFSLFKI WTIKAVLSLIFNMSPPKKSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 180 | 180 | 3.3E-54 | ||
| Phobius | 1 | 38 | 38 | - | – | |
| PANTHER | 1 | 180 | 180 | 3.3E-54 | – | |
| Pfam | 10 | 160 | 151 | 5.0E-10 | ||
| TMHMM | 39 | 61 | 23 | - | – | |
| Phobius | 39 | 59 | 21 | - | – | |
| Phobius | 60 | 64 | 5 | - | – | |
| TMHMM | 65 | 87 | 23 | - | – | |
| Phobius | 65 | 85 | 21 | - | – | |
| Phobius | 86 | 96 | 11 | - | – | |
| Phobius | 97 | 118 | 22 | - | – | |
| TMHMM | 99 | 121 | 23 | - | – | |
| Phobius | 119 | 147 | 29 | - | – | |
| TMHMM | 141 | 163 | 23 | - | – | |
| Phobius | 148 | 171 | 24 | - | – | |
| Phobius | 172 | 180 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. | ||
| Biological process | Endoplasmic reticulum organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum. |
Expression pattern of LotjaGi6g1v0338500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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