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LotjaGi6g1v0338900.1

Overview

Field	Value
Gene ID	LotjaGi6g1v0338900
Transcript ID	LotjaGi6g1v0338900.1
Lotus japonicus genome version	Gifu v1.2
Description	F-box protein; TAIR: AT1G61340.1 F-box family protein; Swiss-Prot: sp\|Q8GX77\|FB316_ARATH F-box protein At1g61340; TrEMBL-Plants: tr\|A0A151T7G9\|A0A151T7G9_CAJCA F-box protein SKIP27; Found in the gene: LotjaGi6g1v0338900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:65314508..65315745) extracted from Lotus japonicus Gifu genome v1.2.

TAAAGGCCCTATTTTTCAGTTCAATGATCTAATTCTGAAATCAAGTGTTAAATGTTAGGATTTCCCTTGTCTATCAATTT TGATTTCTAGTTCCCACCCACGCAGCATAAATAGAAACCTTCATAAATTTCTGGAACAGGTTCGTTTATTGTCTCTTCCA TTTTCCAAATTTTGTTTCTGCCGTTTGTTGATTTCTCCTAATAACACTATTTTAGGAAACTATCGATTTTTACCGTTTTC ATTGTCTTAGTGTTATTTTTCCTCTTGATCTTCTACAACGGCTGTTAAATAGTGCTTGGATTTCAATTGGGTATTCCTGA TTGCACTAAAGTTACAAAGTGATTATTTTTTATTCTCCTCTTAGATTTCTTCTTAGTGAGTTTGGACTTGGCAAAATGGC AATAGGATGTGTGGGAAGGAGGAGGGTCTTGATTCCCAATAATGATGAAGCTTCTCCACCATTGAAGAGATTCATTTGCA GTCATGGCAACTCTGAGAGTTCTTCTCCCCTTGAAGCCCTTCCTCAGGAAATTCTGGTAATCATGGAAATTAATTTCAAG TTTAATTTTTTTTTCTTTTGTTTGCGGTTCAATTTCAAGCATGAGTTTTGATTTTCAATGAGTCTTTTTTTTTACTAATT ATATCCTGAATGGTGTTGCAGATAAAAGTGTTGTGTGGTGTGGACCATGAAGATTTGAAGCAACTTTTTCATGTGTCGAA AACTATTAGAGAAGCAGTAAGTATTAATTCATTCAATTGTTATGTTTGGTTGCTTTTGTTTCAATTGATTGCTTAGTCTT TTTTTTTCATTTTGTTTTCAGACTCTGGTTGCTAAAGAAATGCATTTTGAGTTTAGTACACCAAAGAAGAAAACTTTTGC TTTAATTAGTCCAGTTGATATGGAGGAAGAAATTGAAGCTCCAAACGCACCGTTGCCTTTGAAGAATCCAAAGTCAAGGT TGCAAGGGAGGAAGCTGAGCTCACTGGCCTTGTTTGCTTCCATGGATGAAGAACAATGAACATGAGGGAAATTTCCAATA GACTGTATCTATAATTTAATTTGGTAGATTAGAGAGGGATCGATTTGTGATCCACTCAGAGATGTTGACTTATTTAACAC GCTGAGAAAACTTCACATTTACAAGTCATTTCTTCAAATCTATTATTGAAGATTCCTTTGTCTTGTTTGTGATCTTTCTC TAAATCCATAAGTAGGAAAAAAAATCAATAGAGAGATT

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0338900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAATAGGATGTGTGGGAAGGAGGAGGGTCTTGATTCCCAATAATGATGAAGCTTCTCCACCATTGAAGAGATTCAT TTGCAGTCATGGCAACTCTGAGAGTTCTTCTCCCCTTGAAGCCCTTCCTCAGGAAATTCTGATAAAAGTGTTGTGTGGTG TGGACCATGAAGATTTGAAGCAACTTTTTCATGTGTCGAAAACTATTAGAGAAGCAACTCTGGTTGCTAAAGAAATGCAT TTTGAGTTTAGTACACCAAAGAAGAAAACTTTTGCTTTAATTAGTCCAGTTGATATGGAGGAAGAAATTGAAGCTCCAAA CGCACCGTTGCCTTTGAAGAATCCAAAGTCAAGGTTGCAAGGGAGGAAGCTGAGCTCACTGGCCTTGTTTGCTTCCATGG ATGAAGAACAATGA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0338900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAIGCVGRRRVLIPNNDEASPPLKRFICSHGNSESSSPLEALPQEILIKVLCGVDHEDLKQLFHVSKTIREATLVAKEMH FEFSTPKKKTFALISPVDMEEEIEAPNAPLPLKNPKSRLQGRKLSSLALFASMDEEQ

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR34049 View details on PTHR34049 Search for proteins/transripts with this domain View external data on PTHR34049	6	135	130	2.7E-44	–
PANTHER	PTHR34049:SF1 View details on PTHR34049:SF1 Search for proteins/transripts with this domain View external data on PTHR34049:SF1	6	135	130	2.7E-44	–
SUPERFAMILY	SSF81383 View details on SSF81383 Search for proteins/transripts with this domain View external data on SSF81383	31	73	43	6.15E-6	IPR036047 Show description in modal box View details on IPR036047 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50181 View details on PS50181 Search for proteins/transripts with this domain View external data on PS50181	36	84	49	10.107	IPR001810 Show description in modal box View details on IPR001810 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005515 View details of GO:0005515 AmiGO InterPro QuickGO	Molecular function	Protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	Subterm of View details of GO:0005488

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0338900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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