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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0339100 |
Transcript ID | LotjaGi6g1v0339100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Transmembrane protein, putative; TAIR: AT4G21500.1 transmembrane protein; Swiss-Prot: sp|P40550|PDR11_YEAST ATP-dependent permease PDR11; TrEMBL-Plants: tr|I1MEA1|I1MEA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0339100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65323202..65324941) extracted from Lotus japonicus Gifu genome v1.2.
TAAATATCAAAAGTGAATGGACAGCTTAACGACATATGGACCTCAAATCAATGTCTTGGACTACTAATTAAATTAAAAAT TGAATTGATTCCATGAATGAAAACCTGAAATCAGTAGGGACCAGGGGGGTTAACACAGGGATTAAAATCATGAATTTGAG AAGTTTAAAAGCATAACAACTTTTTAGGTTGGATTTGTTGGTTTTCAGTGTATGCATAAAAGATTGTCTTGGTTATTGCA GAGTAGCACAGGACCACAACACCTTCCACTTCCACAATCCACCCCCTATTATTCCATTCCATGCCTTCTTCTCACGCCAA AAAGCCTTATAAGCCCCACTTCACACTCTGTCTAATAGCCTCTTCCTTTTACCCATCAAAACTCTGCTTTCTCTGTTCAT GGATTTGCTTTTCTTGGAGTAATAATTGTTATCTTGTTCAGGAGAAAGATAATAATATTAACTGCAGTTTGTATCCAATG GAGGAAAGTAGAATTCTTCTAGAATTGAAGCTCATTGTGAACTTTCTATGCATAGAAGCAGTTTCCTTTCTCTCTGTTGT TTCTTCAGATCCTCTGTTTTCATGCATTGTCACCTTTTACACCTTGATTCTCCTATATTTGCCTAGTTTCTTATGGAGAA TTGCTTTCTCACCCGTGCTGGTTCTCACTGGAATTCTCTTGGTTCTCATACTCCGTCTTGGTGCAATTCAGAGATCTGAA GATGAAGAAAAGGAAAAAAAATCCATCGCCAACAAAGAAAACAGGGGGAGCAGAGAAGAGAAACAGGGGAAGCCCGTTGA ACAGATGGAAGACAATTCTCTGGACCATTTTCACCACCATTCGGAAGTAGAGTTCGAATCTGAAATGGGTTTTGAATCAA ATTCGTTTTTTGATGAGTCTTTCGTTGAATGGGACGTGAAAGCGCCATTGAAGGTTATATACGAAGATGAAGAAGAAGAA GAAGCAGAGGAGGAGGGTCACAGTCAGCAACAAAGCGTGGGGATTCTGAGGAACTCTTCGTTGTCACGTTACTACCCTGA ATCTGACTCTGATAGCTCGTCGGAGGAGGATGATTTGCCGGCGGCGATGGAGAAGTGGGACTCGCCGGAGAACATGTGCT TCAGGTGGGATGAGGAAGACGACAAAGAAGGGTTGATTGAGATTGCTCTTGATGGTTGTAAGATGATGAGGGCGTTGGAG TTTCACTTTGAGGAAGAGAATTTGATAGAGATTGATATTTCTCCGACGAGGCGCAGAGAGGTTTCCGGCGAGGAGGAGTT GTTTACCGGTGAGATTAGTTGCAACTAATGAGAGGTTTAATAAAGATTAGGGATGGATTATTATGCGATTTGTTTTTGGG ATAAGTGAGTCGTATTTTAGTGATTTTGGAATTATATTTTTGGGCTTTGGAGTTTGGTCGGCTATGACTATTGTATAGAT GTGCCTCAGTGCCTGTACCAAGTAGGTGCAATTAATTACGTCAAGAAAAGTAAGTATGTCGACCAAAAAAAAAAGTAAGT ACAATTAATCCCAAGTATTCAAATGTGTCAATAAATTGAGTAGTAGTAGAATAAGTTTATCTTCATCTACATCATGATAA CTCAAGTGGTAAGAGTTATGAGACATATGAATTGAGGTGAAGAAGTTCAAGACTCAATCATTGGAGGGTGTAATTTACAT TTCTGATGTTAAAAAAAAAGAATAAGTATATCTTTACACTCCCCTCACACTTATTCCATA
CDS sequence (LotjaGi6g1v0339100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTCTTCTCACGCCAAAAAGCCTTATAAGCCCCACTTCACACTCTGTCTAATAGCCTCTTCCTTTTACCCATCAAA ACTCTGCTTTCTCTGTTCATGGATTTGCTTTTCTTGGAGTAATAATTGTTATCTTGTTCAGGAGAAAGATAATAATATTA ACTGCAGTTTGTATCCAATGGAGGAAAGTAGAATTCTTCTAGAATTGAAGCTCATTGTGAACTTTCTATGCATAGAAGCA GTTTCCTTTCTCTCTGTTGTTTCTTCAGATCCTCTGTTTTCATGCATTGTCACCTTTTACACCTTGATTCTCCTATATTT GCCTAGTTTCTTATGGAGAATTGCTTTCTCACCCGTGCTGGTTCTCACTGGAATTCTCTTGGTTCTCATACTCCGTCTTG GTGCAATTCAGAGATCTGAAGATGAAGAAAAGGAAAAAAAATCCATCGCCAACAAAGAAAACAGGGGGAGCAGAGAAGAG AAACAGGGGAAGCCCGTTGAACAGATGGAAGACAATTCTCTGGACCATTTTCACCACCATTCGGAAGTAGAGTTCGAATC TGAAATGGGTTTTGAATCAAATTCGTTTTTTGATGAGTCTTTCGTTGAATGGGACGTGAAAGCGCCATTGAAGGTTATAT ACGAAGATGAAGAAGAAGAAGAAGCAGAGGAGGAGGGTCACAGTCAGCAACAAAGCGTGGGGATTCTGAGGAACTCTTCG TTGTCACGTTACTACCCTGAATCTGACTCTGATAGCTCGTCGGAGGAGGATGATTTGCCGGCGGCGATGGAGAAGTGGGA CTCGCCGGAGAACATGTGCTTCAGGTGGGATGAGGAAGACGACAAAGAAGGGTTGATTGAGATTGCTCTTGATGGTTGTA AGATGATGAGGGCGTTGGAGTTTCACTTTGAGGAAGAGAATTTGATAGAGATTGATATTTCTCCGACGAGGCGCAGAGAG GTTTCCGGCGAGGAGGAGTTGTTTACCGGTGAGATTAGTTGCAACTAA
Protein sequence (LotjaGi6g1v0339100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSSHAKKPYKPHFTLCLIASSFYPSKLCFLCSWICFSWSNNCYLVQEKDNNINCSLYPMEESRILLELKLIVNFLCIEA VSFLSVVSSDPLFSCIVTFYTLILLYLPSFLWRIAFSPVLVLTGILLVLILRLGAIQRSEDEEKEKKSIANKENRGSREE KQGKPVEQMEDNSLDHFHHHSEVEFESEMGFESNSFFDESFVEWDVKAPLKVIYEDEEEEEAEEEGHSQQQSVGILRNSS LSRYYPESDSDSSSEEDDLPAAMEKWDSPENMCFRWDEEDDKEGLIEIALDGCKMMRALEFHFEEENLIEIDISPTRRRE VSGEEELFTGEISCN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 70 | 70 | - | – | |
TMHMM | 15 | 37 | 23 | - | – | |
Phobius | 71 | 104 | 34 | - | – | |
PANTHER | 72 | 324 | 253 | 3.4E-86 | – | |
TMHMM | 82 | 104 | 23 | - | – | |
Phobius | 105 | 109 | 5 | - | – | |
Phobius | 110 | 131 | 22 | - | – | |
TMHMM | 114 | 136 | 23 | - | – | |
Phobius | 132 | 335 | 204 | - | – | |
MobiDBLite | 143 | 168 | 26 | - | – | |
MobiDBLite | 217 | 266 | 50 | - | – | |
MobiDBLite | 228 | 248 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0339100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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