Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0339300 |
| Transcript ID | LotjaGi6g1v0339300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Armadillo/beta-catenin repeat protein; TAIR: AT1G61350.1 ARM repeat superfamily protein; Swiss-Prot: sp|P39968|VAC8_YEAST Vacuolar protein 8; TrEMBL-Plants: tr|I1M2D0|I1M2D0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0339300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65342072..65345516) extracted from Lotus japonicus Gifu genome v1.2.
ACATACTACATTTTATAATTATACACACACTCTCTCTCTGGTTTTCTCTTTCTCTCTCTAACATTTCGTACCCGACCCGT TTAGAAAATGGGTTCGCTCCAAAACCTCTGAGAACCAAAAAAATGGGCGGTGAACAGCGAGAAACCACCGTCGAGCTCAT CTCCTTCCTGATCTCCCTCTCTCACTCCATCAGAGTCTTCTCCGGAAGATGGCAGCTCATTCGCAACAAGCTCGAAGACC TCCGTTCTTCGCTCACCGCCGGCGACAGCCACTCACTCTCCGGCGTGTCCCCGGCAATAGCAACCACCGTGGAGGACTGC CACGAGCAGGCTCAGCGGTGTCTGGATCTGTCATACAGCGGGAAGCTTCTGATGCAGAGTGATTTGGACGCGATTTTGGG GAAATTGGAAGGGCACGTGAAGAAGCTCAACGAGATTCACAGGAAGGGTTTTCTCTCAAATGGGTATGCTGTGGTTGTCT CAAAACCTGGACTTGCTGCTTCCAAAGAGGACATGAGGTTCTACCTCAGAGACTTGCTTACCAGAATCAAGGTCGGTGAT TGTGAAATGAAGAAGCAGGCTCTGGTGAATTTGTACGAGGTTGTTGTCCTGGATGAAAAGTATGTCACACTGATGCTTCA AATTGCTGAGTTTGTTCATGTGCTGTTGGATTTTCTCGGTTCCGGCGAGGCGGAGATTCAGGATGAGGCTATCAAGGTGG TTTCTGTTGTTGCAGGGTTTGATTATGGTAAAGGGGTTTTGGTTGCTGCTGGGGTGATTGCCTCGTTGATTCGGGTTTTG GAATGTGGGAGTGAGTTGGGGAAGGTTGGTGCTGCTAGGTGCTTGCAGAAGTTGACTGAGAATTCGGATAATGCTTGGTC TGTTTCATCTCATGGGGGTGTCACTTCCTTGTTGAAGATTTGTGACTCTGTGGATTGTAAAGGGGAATTGATTAACTCAG CGTGTGGGGTGTTGAGGAATCTTGCTGGTGTTGAAGAAATTAAGAGGTTTATGGTTGAGGAAAATGTGGTCTCCACGTTT ATCAGGCTTGTGAGATCCACGGATGAAACAGTTCAGGTGAGTTCTGTGGATTTCATTCAAAACATTGCCTCTGAGGATGA ATTGGTTAGGCAGATGGTGGTTAAAGAAGGTGGGATTCGTGTGTTCTTGCATGTTTTGGATCCTAAATTGACTTGTTCAT CTAAAACAAGGGAGGTTGTGATGAGAGCTATTGAGAATTTGTGTTTTTCTTCACCTGGTTCTGTAAGTATTTTGATAACT TATGGCTTTGTGGATCAATTACTATATTATGTTAGAAATGGAGAAGTTTCAATTCAAGAGCTGGCGTTGAAAGTGGCAAT TAGACTGTATGGAACATCAGAGGAGGCTAAGAAAGCGTTGGGAGATGCGGGATTCATGGCAGAGCTTGTTAAGTTTCTAA CTGCAAAATCATTTGAAGTTCGCGAAATGGCAGCTGAGGCACTCTCTGGCATGGTTATGGTGCCAAAAAATAGAAAAAGG TTTGTGCAAGATGATCAAAGTATTGCTCTTCTTCTGCAATTGCTGGAACCAAATGAGGGAAACTCAAATAACAAAAAGTT TTTGATCTCCATCTTAATGTCATTAACAAGCTGCAACAGTGGGAAGAAGAAGATTGTTAGTTCTGGATATGCCAAAAATA TAGAGAGACTTGCAGAAGCTGAAGTTTCTTCTGATGCCAAGAGACTTGTTAGGAAGCTAGCCACAAACCGGTTCCGCAGT ATGCTGAGTGGAATCTGGCATTCTTGAATGTAATTCTTTTCTCATCCCCTTTTAACTGTATATCTTACATAAATTTGTTC CAAGTTTTGCTAATTCGATTTCTAGCATGTTTGGATCAGCTTCAATTTCCTCATAATACACCCAAAAGCATTTACCCAAA ATTGATTTTAACTTTAAAAAATCAATTCTAGAAGAATTTCCAAACATGTCAACATGTTATCAGTCTGAATTCATTGTCCT TGCCCACAACCACAGTAGATTAGTTTTTTAATTGAGGTTGTAATCAGTAGCTGTAATACTTATACCATCAAAGATTTGTT CTAGATTTTCTTGAAATACCCTGGCATTGTTTTTAGGCCTTTAGTTTGTGAAGAAGAAAGGAATTTATTATATATAACAT AAAAGAATGTAATTTCTAGTGATAATTACTCATCTGTATGTGTTGTGCTCTATGAGTAGCATTAGCATATTTGGATCAGT TTACTTTTCTCATAATCAATTATGACACTCAAAACACAGAAGCTACTCAAAGAAACATCTCCTAAAAATTGATCTTTGGC TTTAGAGTCAATTGCAGAATATTGTTTGTGCATTTGTGAATTGTGTGTGATCACATGGGGAAGACATGAATCCTCCATTG GCATGTGAGTAGTGGCAATTTTGCTTTTCTCTATATACAGTATATGCAGGGAGATAGTGATAGATGATGAAGTATTCAGT CTGTATTGCTTTGTAATTTAGCTAGTTTTGTCTTTTTACTATAGCAGCTACCTTATTGTTGATGAAGAATGTACAGCACG CCAATTCTTTGCATGCTTGTTGCCCGGGACCTTTCAGATAAGACAACAAAAAATTGAACTAGCTAACATCATTGTATGTT TATATTTCTTTTTAATCACTAATTGCCTCTAAGTTTCTAAATCTGGATGGAGATTTAGGCACTTTAGATTCTGCTAATAG AGGAAAGCAAACTTGCTTGTGTGAAGAAGTAAATGGTGTTGGCTCTTCATTATTATGCCACCTGTGTCCAACTAATGCGC CTTGTGAATGGGAAACATGTGAATATGGGAGGCTGTTAAAAGGGACGAAGGAAGGCACAGGAAACCCATGCGTTTTTCCA ATTTCCAAGCTTTCATCCCAAATAATGAAGATCATATTTATATCGGCTTATTTTCCCCCAAAATTAACTCGAACACTCAG AAGCTACTCATGTAAGGTTCTCTCTAAAATTGATTTATGCACGAGTTCATTTAGAGTGTGTATGTTGAAGGGTTGAAGCC ATTTTGATGAAAGAGTTGTGCTACAGCTGCAATGGATTTTGATGGTAAACACTTCCACCAATGGATAAACTGTGCATTGT GGTTGGTGCCACCCACTTAATCAAAAGCATAAAAAAAATACACCAAAGTTCGGTGACCATCATGTTCAGGTTGTATTTTG TGTTTTATAGGCTTTGCTTGTTTAAAAAGCTACTATGAAAGATCAATTATGGGCTAAAGTCATTTTCTCTAGAACTGTTC GATGATGACAATTTTTTTATTCAAACGATTGTGTTTGAATCCACATTAGGGTATTGTTGCCTATCCAATAATGCACCAAC TTTTTTGTGTTGTATATGTAGTGTTACTCAAATCTAAAATGCCAAAAGCTATTATAATTTTTTTCTAGCATTACAATTAG GGAAC
CDS sequence (LotjaGi6g1v0339300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCGGTGAACAGCGAGAAACCACCGTCGAGCTCATCTCCTTCCTGATCTCCCTCTCTCACTCCATCAGAGTCTTCTC CGGAAGATGGCAGCTCATTCGCAACAAGCTCGAAGACCTCCGTTCTTCGCTCACCGCCGGCGACAGCCACTCACTCTCCG GCGTGTCCCCGGCAATAGCAACCACCGTGGAGGACTGCCACGAGCAGGCTCAGCGGTGTCTGGATCTGTCATACAGCGGG AAGCTTCTGATGCAGAGTGATTTGGACGCGATTTTGGGGAAATTGGAAGGGCACGTGAAGAAGCTCAACGAGATTCACAG GAAGGGTTTTCTCTCAAATGGGTATGCTGTGGTTGTCTCAAAACCTGGACTTGCTGCTTCCAAAGAGGACATGAGGTTCT ACCTCAGAGACTTGCTTACCAGAATCAAGGTCGGTGATTGTGAAATGAAGAAGCAGGCTCTGGTGAATTTGTACGAGGTT GTTGTCCTGGATGAAAAGTATGTCACACTGATGCTTCAAATTGCTGAGTTTGTTCATGTGCTGTTGGATTTTCTCGGTTC CGGCGAGGCGGAGATTCAGGATGAGGCTATCAAGGTGGTTTCTGTTGTTGCAGGGTTTGATTATGGTAAAGGGGTTTTGG TTGCTGCTGGGGTGATTGCCTCGTTGATTCGGGTTTTGGAATGTGGGAGTGAGTTGGGGAAGGTTGGTGCTGCTAGGTGC TTGCAGAAGTTGACTGAGAATTCGGATAATGCTTGGTCTGTTTCATCTCATGGGGGTGTCACTTCCTTGTTGAAGATTTG TGACTCTGTGGATTGTAAAGGGGAATTGATTAACTCAGCGTGTGGGGTGTTGAGGAATCTTGCTGGTGTTGAAGAAATTA AGAGGTTTATGGTTGAGGAAAATGTGGTCTCCACGTTTATCAGGCTTGTGAGATCCACGGATGAAACAGTTCAGGTGAGT TCTGTGGATTTCATTCAAAACATTGCCTCTGAGGATGAATTGGTTAGGCAGATGGTGGTTAAAGAAGGTGGGATTCGTGT GTTCTTGCATGTTTTGGATCCTAAATTGACTTGTTCATCTAAAACAAGGGAGGTTGTGATGAGAGCTATTGAGAATTTGT GTTTTTCTTCACCTGGTTCTGTAAGTATTTTGATAACTTATGGCTTTGTGGATCAATTACTATATTATGTTAGAAATGGA GAAGTTTCAATTCAAGAGCTGGCGTTGAAAGTGGCAATTAGACTGTATGGAACATCAGAGGAGGCTAAGAAAGCGTTGGG AGATGCGGGATTCATGGCAGAGCTTGTTAAGTTTCTAACTGCAAAATCATTTGAAGTTCGCGAAATGGCAGCTGAGGCAC TCTCTGGCATGGTTATGGTGCCAAAAAATAGAAAAAGGTTTGTGCAAGATGATCAAAGTATTGCTCTTCTTCTGCAATTG CTGGAACCAAATGAGGGAAACTCAAATAACAAAAAGTTTTTGATCTCCATCTTAATGTCATTAACAAGCTGCAACAGTGG GAAGAAGAAGATTGTTAGTTCTGGATATGCCAAAAATATAGAGAGACTTGCAGAAGCTGAAGTTTCTTCTGATGCCAAGA GACTTGTTAGGAAGCTAGCCACAAACCGGTTCCGCAGTATGCTGAGTGGAATCTGGCATTCTTGA
Protein sequence (LotjaGi6g1v0339300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGEQRETTVELISFLISLSHSIRVFSGRWQLIRNKLEDLRSSLTAGDSHSLSGVSPAIATTVEDCHEQAQRCLDLSYSG KLLMQSDLDAILGKLEGHVKKLNEIHRKGFLSNGYAVVVSKPGLAASKEDMRFYLRDLLTRIKVGDCEMKKQALVNLYEV VVLDEKYVTLMLQIAEFVHVLLDFLGSGEAEIQDEAIKVVSVVAGFDYGKGVLVAAGVIASLIRVLECGSELGKVGAARC LQKLTENSDNAWSVSSHGGVTSLLKICDSVDCKGELINSACGVLRNLAGVEEIKRFMVEENVVSTFIRLVRSTDETVQVS SVDFIQNIASEDELVRQMVVKEGGIRVFLHVLDPKLTCSSKTREVVMRAIENLCFSSPGSVSILITYGFVDQLLYYVRNG EVSIQELALKVAIRLYGTSEEAKKALGDAGFMAELVKFLTAKSFEVREMAAEALSGMVMVPKNRKRFVQDDQSIALLLQL LEPNEGNSNNKKFLISILMSLTSCNSGKKKIVSSGYAKNIERLAEAEVSSDAKRLVRKLATNRFRSMLSGIWHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 554 | 547 | 2.3E-249 | – | |
| PANTHER | 8 | 554 | 547 | 2.3E-249 | – | |
| SUPERFAMILY | 120 | 525 | 406 | 2.53E-43 | ||
| Gene3D | 135 | 545 | 411 | 2.1E-56 | ||
| SMART | 164 | 205 | 42 | 230.0 | ||
| SMART | 206 | 246 | 41 | 100.0 | ||
| SMART | 247 | 289 | 43 | 52.0 | ||
| ProSiteProfiles | 258 | 302 | 45 | 10.482 | ||
| SMART | 290 | 330 | 41 | 5.8 | ||
| SMART | 332 | 375 | 44 | 0.067 | ||
| SMART | 419 | 459 | 41 | 0.31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0339300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…